EMLSAG00000000471, EMLSAG00000000471-683237 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000471
Unique NameEMLSAG00000000471-683237
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000471 vs. GO
Match: - (symbol:rpc25-2 "RNA polymerase III subunit" species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA;ISS] [GO:0001056 "RNA polymerase III activity" evidence=IBA] [GO:0006384 "transcription initiation from RNA polymerase III promoter" evidence=ISS;IBA] [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS;IBA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273425 dictyBase:DDB_G0273523 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384 InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1 RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:44689.DDB_0216296 EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862 GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425 KEGG:ddi:DDB_G0273523 OMA:VESISYP ProtClustDB:CLSZ2729227 PRO:PR:Q557J3 Uniprot:Q557J3)

HSP 1 Score: 137.117 bits (344), Expect = 7.876e-38
Identity = 76/220 (34.55%), Postives = 118/220 (53.64%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPT--------------EESSEPNSE--------KIPYTITASVNGPGLGLINWW 198
            MF L  ++  VR+  SQ    +   + +EI +K ++KVVLN GL V L+DIL  GDS+V  GDG +H  V+FR++VF+PF  E++ G IK  S+  +QISLGFF +I++ P  L NP  +++ + +W WE+      ++ LF + G  +RF++    F+      AP+               E  E   E        K P  +  S+   GLG+++WW
Sbjct:    1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNYNQEEGLWYWEW-----NENQLFFEDGGRVRFKIDQVEFNPEISQPAPSPKNVNTEAMDSYSLREYKEKQIENENLLKQVKSPLILKVSMREAGLGMVSWW 214
[Close]
BLAST of EMLSAG00000000471 vs. GO
Match: - (symbol:rpc25-1 "RNA polymerase III subunit" species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA;ISS] [GO:0001056 "RNA polymerase III activity" evidence=IBA] [GO:0006384 "transcription initiation from RNA polymerase III promoter" evidence=ISS;IBA] [GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS;IBA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] InterPro:IPR005576 Pfam:PF03876 dictyBase:DDB_G0273425 dictyBase:DDB_G0273523 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000010 GO:GO:0005666 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 GO:GO:0006384 InterPro:IPR013238 Pfam:PF08292 RefSeq:XP_644608.1 RefSeq:XP_644642.1 ProteinModelPortal:Q557J3 STRING:44689.DDB_0216296 EnsemblProtists:DDB0216296 EnsemblProtists:DDB0304862 GeneID:8618972 GeneID:8619005 KEGG:ddi:DDB_G0273425 KEGG:ddi:DDB_G0273523 OMA:VESISYP ProtClustDB:CLSZ2729227 PRO:PR:Q557J3 Uniprot:Q557J3)

HSP 1 Score: 137.117 bits (344), Expect = 7.876e-38
Identity = 76/220 (34.55%), Postives = 118/220 (53.64%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPT--------------EESSEPNSE--------KIPYTITASVNGPGLGLINWW 198
            MF L  ++  VR+  SQ    +   + +EI +K ++KVVLN GL V L+DIL  GDS+V  GDG +H  V+FR++VF+PF  E++ G IK  S+  +QISLGFF +I++ P  L NP  +++ + +W WE+      ++ LF + G  +RF++    F+      AP+               E  E   E        K P  +  S+   GLG+++WW
Sbjct:    1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNYNQEEGLWYWEW-----NENQLFFEDGGRVRFKIDQVEFNPEISQPAPSPKNVNTEAMDSYSLREYKEKQIENENLLKQVKSPLILKVSMREAGLGMVSWW 214
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BLAST of EMLSAG00000000471 vs. GO
Match: - (symbol:AT1G06790 "AT1G06790" species:3702 "Arabidopsis thaliana" [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription, DNA-templated" evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009062 "fatty acid catabolic process" evidence=RCA] InterPro:IPR005576 Pfam:PF03876 EMBL:CP002684 GO:GO:0006351 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011001 GO:GO:0003899 eggNOG:COG1095 Gene3D:3.30.1490.120 SUPFAM:SSF88798 UniGene:At.26438 UniGene:At.48160 HOGENOM:HOG000157370 KO:K03022 InterPro:IPR013238 Pfam:PF08292 OMA:VESISYP EMBL:AY065288 EMBL:AY142661 PIR:G86202 RefSeq:NP_172164.1 DNASU:837190 EnsemblPlants:AT1G06790.1 GeneID:837190 KEGG:ath:AT1G06790 TAIR:At1g06790 InParanoid:Q9M9Y6 ProtClustDB:CLSN2682503 PRO:PR:Q9M9Y6 Genevestigator:Q9M9Y6 Uniprot:Q9M9Y6)

HSP 1 Score: 133.65 bits (335), Expect = 5.583e-37
Identity = 75/205 (36.59%), Postives = 118/205 (57.56%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYR-----FDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT 200
            MF LSEL+  +R+P   L   L DA++  +     +KV+ ++GL V ++DI  +   FV PGDGA+   V  R++VFRPF+ E+I  K K    +G++++LGFF+DI+VP   +  P R     ++    +WVWEY      K D  +D   +I+FRV S S+    P+V PTE  +E      P  +T +++  GLG ++WW++
Sbjct:    1 MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVLPGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRCEPDPYNRKQMIWVWEYGEP---KEDYIVDDACQIKFRVESISY----PSV-PTER-AEDAKPFAPMVVTGNMDDDGLGPVSWWDS 196
[Close]
BLAST of EMLSAG00000000471 vs. GO
Match: - (symbol:POLR3H "DNA-directed RNA polymerase III subunit RPC8" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] InterPro:IPR005576 Pfam:PF03876 GO:GO:0006351 EMBL:AL023553 GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798 HGNC:HGNC:30349 ProteinModelPortal:F8WDV1 SMR:F8WDV1 PRIDE:F8WDV1 Ensembl:ENST00000431534 NextBio:35514162 ArrayExpress:F8WDV1 Bgee:F8WDV1 Uniprot:F8WDV1)

HSP 1 Score: 122.865 bits (307), Expect = 7.342e-34
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQ 98
            MFVL E+   VR+P  Q  + L D++ EE+N+K++NKVV NVGL +CLFDI ++ D++VFPGDGASHT V FR +VF PF++EI+ GKIK CS +GV 
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVH 98
[Close]
BLAST of EMLSAG00000000471 vs. GO
Match: - (symbol:POLR3H "DNA-directed RNA polymerase III subunit RPC8" species:9606 "Homo sapiens" [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] InterPro:IPR005576 Pfam:PF03876 GO:GO:0006351 EMBL:AL023553 GO:GO:0003899 Gene3D:3.30.1490.120 SUPFAM:SSF88798 HGNC:HGNC:30349 ProteinModelPortal:E7ERZ2 SMR:E7ERZ2 Ensembl:ENST00000442616 NextBio:35500115 ArrayExpress:E7ERZ2 Bgee:E7ERZ2 Uniprot:E7ERZ2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.999e-21
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHT 68
            MFVL E+   VR+P  Q  + L D++ EE+N+K++NKVV NVGL +CLFDI ++ D++VFPGDGASHT
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHT 68
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BLAST of EMLSAG00000000471 vs. C. finmarchicus
Match: gi|592860033|gb|GAXK01097529.1| (TSA: Calanus finmarchicus comp38167_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 265.003 bits (676), Expect = 6.416e-88
Identity = 120/200 (60.00%), Postives = 156/200 (78.00%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT 200
            MFVLSE+++L+RL      KSL D L +EINRK++NKV++NVGL + L DILE+G+SF+FPGDGASHT V+FR+LVFRP MEE++ GKIKSCSK+GV +SL FF+DI +P ESLQ+P RFDE + VWVWEYP E+G  HDLFMDPGE+IR RV S+ F DT P      ES +  ++  PY++  ++N PGLGL++WWN+
Sbjct:  147 MFVLSEIRTLIRLLPRGFDKSLEDQLTDEINRKLANKVMINVGLCLSLHDILEVGESFLFPGDGASHTKVRFRMLVFRPQMEEVLTGKIKSCSKEGVHVSLEFFDDILIPAESLQHPSRFDETESVWVWEYPVEEGEHHDLFMDPGEKIRMRVVSEQFVDTGPTKPKITESEQEEAKTPPYSLVGTINEPGLGLLSWWNS 746
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BLAST of EMLSAG00000000471 vs. C. finmarchicus
Match: gi|592890126|gb|GAXK01068249.1| (TSA: Calanus finmarchicus comp17989_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.5134 bits (101), Expect = 1.692e-4
Identity = 32/154 (20.78%), Postives = 64/154 (41.56%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVT 154
            MF    L   + L     G  L D +++++  +V        G  + +  I  +G   + PG G     V+++ +VFRPF  E+++  +   +K G+   +G     ++   S+     FD       ++   E     D+ +   +EIR ++ 
Sbjct:  175 MFYHISLDHEIMLHPRYFGPQLMDTVKQKLFTEVEGTCTGKYGFVIAVTTIDCVGAGLIQPGQGFVLYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLS-CFISRHSIPADMSFDPNSNPPCYKTSDE-----DMVIQQDDEIRLKIV 618
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BLAST of EMLSAG00000000471 vs. C. finmarchicus
Match: gi|592799496|gb|GAXK01155072.1| (TSA: Calanus finmarchicus comp1485599_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.080e+0
Identity = 20/71 (28.17%), Postives = 33/71 (46.48%), Query Frame = 0 
Query:   86 NGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQ 156
            NG I +  +     ++G  +DI     SLQ    +D   +  + E PT D  K ++   P +  RFR +S+
Sbjct: 1428 NGLISTPQEQETVDTIGVTDDIIPAISSLQTKETWDNIGETIIGEIPTRDLPKVEILEQPCQSYRFRYSSE 1640
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BLAST of EMLSAG00000000471 vs. C. finmarchicus
Match: gi|592799495|gb|GAXK01155073.1| (TSA: Calanus finmarchicus comp1485599_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.108e+0
Identity = 20/71 (28.17%), Postives = 33/71 (46.48%), Query Frame = 0 
Query:   86 NGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQ 156
            NG I +  +     ++G  +DI     SLQ    +D   +  + E PT D  K ++   P +  RFR +S+
Sbjct: 1402 NGLISTPQEQETVDTIGVTDDIIPAISSLQTKETWDNIGETIIGEIPTRDLPKVEILEQPCQSYRFRYSSE 1614
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BLAST of EMLSAG00000000471 vs. C. finmarchicus
Match: gi|592779557|gb|GAXK01175011.1| (TSA: Calanus finmarchicus comp1118069_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 5.152e+0
Identity = 10/30 (33.33%), Postives = 22/30 (73.33%), Query Frame = 0 
Query:   71 QFRLLVFRPFMEEIINGKIKSCSKDGVQIS 100
            +F++  F+  ++ I++GKI  C KDG++++
Sbjct:  221 EFKMTEFQSMLDFILDGKIDYCEKDGMKLA 310
[Close]
BLAST of EMLSAG00000000471 vs. C. finmarchicus
Match: gi|592779559|gb|GAXK01175009.1| (TSA: Calanus finmarchicus comp1118069_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 7.061e+0
Identity = 10/31 (32.26%), Postives = 22/31 (70.97%), Query Frame = 0 
Query:   70 VQFRLLVFRPFMEEIINGKIKSCSKDGVQIS 100
             +F++  F+  ++ I++GKI  C KDG++++
Sbjct:  218 TEFKMTEFQSMLDFILDGKIDYCEKDGMKLA 310
[Close]
BLAST of EMLSAG00000000471 vs. L. salmonis peptides
Match: EMLSAP00000000471 (pep:novel supercontig:LSalAtl2s:LSalAtl2s106:813843:814445:1 gene:EMLSAG00000000471 transcript:EMLSAT00000000471 description:"augustus_masked-LSalAtl2s106-processed-gene-8.4")

HSP 1 Score: 410.223 bits (1053), Expect = 5.865e-147
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT 200
            MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT
Sbjct:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT 200
[Close]
BLAST of EMLSAG00000000471 vs. SwissProt
Match: gi|29428071|sp|Q9Y535.1|RPC8_HUMAN (RecName: Full=DNA-directed RNA polymerase III subunit RPC8; Short=RNA polymerase III subunit C8; AltName: Full=DNA-directed RNA polymerase III subunit H; AltName: Full=RNA polymerase III subunit 22.9 kDa subunit; Short=RPC22.9)

HSP 1 Score: 249.21 bits (635), Expect = 1.423e-83
Identity = 117/205 (57.07%), Postives = 155/205 (75.61%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKI-----PYTITASVNGPGLGLINWWNT 200
            MFVL E+   VR+P  Q  + L D++ EE+N+K++NKVV NVGL +CLFDI ++ D++VFPGDGASHT V FR +VF PF++EI+ GKIK CS +GV +SLGFF+DI +PPESLQ P +FDEA+QVWVWEY TE+G  HDL+MD GEEIRFRV  +SF DTSP   P+   +  +SE++     PYT+  S++ PGLGL++WW +
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGA-HDLYMDTGEEIRFRVVDESFVDTSPT-GPSSADATTSSEELPKKEAPYTLVGSISEPGLGLLSWWTS 203
[Close]
BLAST of EMLSAG00000000471 vs. SwissProt
Match: gi|29427995|sp|Q9D2C6.2|RPC8_MOUSE (RecName: Full=DNA-directed RNA polymerase III subunit RPC8; AltName: Full=DNA-directed RNA polymerase III subunit H; AltName: Full=RNA polymerase III subunit C7)

HSP 1 Score: 242.276 bits (617), Expect = 6.729e-81
Identity = 117/205 (57.07%), Postives = 151/205 (73.66%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPN-----VAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT 200
            MFVL E+   VR+P  Q  + L D++ EE+N+K++NKVV NVGL +CLFDI ++ D++VFPGDGASHT V FR +VF PF++EI+ GKIK CS +GV +SLGFF+DI +PPESLQ P +FDEA+QVWVWEY TE+G  HDL+MD GEEIRFRV  +SF DTSP       A +     P  E  PYT+  S++ PGLGL++WW +
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGA-HDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPKKEA-PYTLVGSISEPGLGLLSWWTS 203
[Close]
BLAST of EMLSAG00000000471 vs. SwissProt
Match: gi|122136999|sp|Q2T9X1.1|RPC8_BOVIN (RecName: Full=DNA-directed RNA polymerase III subunit RPC8; Short=RNA polymerase III subunit C8; AltName: Full=DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide; AltName: Full=DNA-directed RNA polymerase III subunit H)

HSP 1 Score: 239.58 bits (610), Expect = 7.711e-80
Identity = 115/205 (56.10%), Postives = 151/205 (73.66%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPN-----VAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT 200
            MFVL E+   VR+P  Q  + L D++ EE+N+K++NKV+ NVGL +CLFDI ++ D++VFPGDGASHT V FR +VF PF++EI+ GKIK CS +GV +SLGFF+DI +PPESLQ P +FDEA+QVWVWEY TE+G  HDL+MD GEE+RFRV  +SF DTSP       A +     P  E  PYT+  S++ PGLGL++WW +
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGA-HDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSEELPKKEA-PYTLMGSISEPGLGLLSWWTS 203
[Close]
BLAST of EMLSAG00000000471 vs. SwissProt
Match: gi|74582844|sp|O94285.1|RPC8_SCHPO (RecName: Full=DNA-directed RNA polymerase III subunit rpc8; Short=RNA polymerase III subunit C8; AltName: Full=RNA polymerase III subunit C25)

HSP 1 Score: 171.014 bits (432), Expect = 6.569e-53
Identity = 83/203 (40.89%), Postives = 131/203 (64.53%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGK-HDLFMDPGEEIRFRVTSQSFSDTSPNV---APTEESSEPNSEKIPYTITASVNGPGLGLINWWN 199
            MF+LS    ++ +  S   K   +AL EEI++K +NKV+ N+GLA+C++D L+IG+  +  GDG+S+ +V FRL++FRPF  E++ GKIKSCS++G+++++ FF+DI++P + L +P  F   ++ WVW+   EDG +  +L+ D  EEIRF++ S+ F D SP     A     +E      PYT+ AS +  GLG+  WW 
Sbjct:    1 MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAITGTEALESVSPYTLIASCSRDGLGIPAWWK 203
[Close]
BLAST of EMLSAG00000000471 vs. SwissProt
Match: gi|549722|sp|P35718.1|RPC8_YEAST (RecName: Full=DNA-directed RNA polymerase III subunit RPC8; Short=RNA polymerase III subunit C8; AltName: Full=DNA-directed RNA polymerase III 25 kDa polypeptide; AltName: Full=RNA polymerase III subunit C25)

HSP 1 Score: 140.584 bits (353), Expect = 8.170e-41
Identity = 73/215 (33.95%), Postives = 120/215 (55.81%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQIS-LGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSE---------------PNSEKIP-YTITASVNGPGLGLINWW 198
            MF+LS++  LVR+P  Q  +    A+  ++N K +NK++ NVGL + ++D+L + +  + PGDG+S+ +V FR +VF+PF+ EI+ G I  C+ +G+++S LG F+DI++P   L     +   +  W+W  P ++  K  L+ D  E+IRFR+  + F D  P      E  E               P +EK P Y +  S    G+GL++WW
Sbjct:    1 MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIW--PMDEETK--LYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211
[Close]
BLAST of EMLSAG00000000471 vs. SwissProt
Match: gi|122057759|sp|Q557J3.1|RPC8_DICDI (RecName: Full=DNA-directed RNA polymerase III subunit rpc8; Short=RNA polymerase III subunit C8; AltName: Full=DNA-directed RNA polymerase III subunit H)

HSP 1 Score: 137.117 bits (344), Expect = 5.019e-39
Identity = 76/220 (34.55%), Postives = 118/220 (53.64%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPT--------------EESSEPNSE--------KIPYTITASVNGPGLGLINWW 198
            MF L  ++  VR+  SQ    +   + +EI +K ++KVVLN GL V L+DIL  GDS+V  GDG +H  V+FR++VF+PF  E++ G IK  S+  +QISLGFF +I++ P  L NP  +++ + +W WE+      ++ LF + G  +RF++    F+      AP+               E  E   E        K P  +  S+   GLG+++WW
Sbjct:    1 MFHLITIEDKVRIAPSQFNNEV-QTIEDEIEKKYTSKVVLNAGLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKGEVLEGVIKKSSRQSIQISLGFFHEIYLNPIELPNPSNYNQEEGLWYWEW-----NENQLFFEDGGRVRFKIDQVEFNPEISQPAPSPKNVNTEAMDSYSLREYKEKQIENENLLKQVKSPLILKVSMREAGLGMVSWW 214
[Close]
BLAST of EMLSAG00000000471 vs. SwissProt
Match: gi|73920767|sp|P39466.2|RPOE_SULAC (RecName: Full=DNA-directed RNA polymerase subunit E)

HSP 1 Score: 66.6254 bits (161), Expect = 9.090e-13
Identity = 45/199 (22.61%), Postives = 91/199 (45.73%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWN 199
            MF L   K +VR+P    G+S+ +   + + ++   K++ ++G+ + + +     + F+  GDGA++  V+F +LV+ P + E+I G++      GV +++G  + +    +   +  +FD    + + E       K    +  G+ +R  + S S S                S ++P  I  ++  P LG I W N
Sbjct:    1 MFKLVRAKGIVRIPPEYFGQSVDEIAIKILRQEYQEKLIKDIGVVLGIVNAKASEEGFIIFGDGATYHEVEFDMLVYTPIIHEVIEGEVSQVDNYGVYVNMGPVDGLVHISQITDDNLKFDSNRGILIGE-------KSKKSIQKGDRVRAMIISASMS----------------SGRLP-RIALTMKQPYLGKIEWIN 175
[Close]
BLAST of EMLSAG00000000471 vs. SwissProt
Match: gi|2500642|sp|Q57840.1|RPOE1_METJA (RecName: Full=DNA-directed RNA polymerase subunit E')

HSP 1 Score: 58.151 bits (139), Expect = 1.398e-9
Identity = 42/197 (21.32%), Postives = 90/197 (45.69%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINW 197
            M+ + E+  +V++P  + GK L + +++ +  K   ++  +VG  + + D+ +IG+  V  GDG+++  V F  LV+ P M E+I G++    + G  + LG  + +    + + +   +D   +  +       G +    ++ G+ +R R+ + S            ++      KI  T+      P LG + W
Sbjct:    1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAII-------GKETGKVLEIGDYVRARIVAISL-----------KAERKRGSKIALTMRQ----PYLGKLEW 175
[Close]
BLAST of EMLSAG00000000471 vs. SwissProt
Match: gi|464672|sp|P34087.1|RPB7_YEAST (RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7; AltName: Full=B16)

HSP 1 Score: 57.7658 bits (138), Expect = 1.437e-9
Identity = 28/104 (26.92%), Postives = 57/104 (54.81%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCL--FDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLG 102
            MF + +L   + L  S  G  +   L+ ++  +V        G  +C+  +D ++I    + P DG++  +V++R +VF+PF  E+++G + SCS+ G ++ +G
Sbjct:    1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVG 104
[Close]
BLAST of EMLSAG00000000471 vs. SwissProt
Match: gi|3334317|sp|O14459.1|RPB7_SCHPO (RecName: Full=DNA-directed RNA polymerase II subunit rpb7; Short=RNA polymerase II subunit B7)

HSP 1 Score: 52.7582 bits (125), Expect = 9.929e-8
Identity = 36/135 (26.67%), Postives = 61/135 (45.19%), Query Frame = 0 
Query:    2 FVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFD--ILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLG----FFEDIWVPPES----LQNPYRFDEADQV 126
            F L EL   + L  S  G  + D L+ ++   V        G  +C+ D   ++I    V PG G +   V++R +++RPF  E+++  + + +K G   ++G    F     VPP+       NP  +   DQV
Sbjct:    3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQV 137
[Close]
BLAST of EMLSAG00000000471 vs. Select Arthropod Genomes
Match: XP_394665.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Apis mellifera])

HSP 1 Score: 248.825 bits (634), Expect = 8.487e-84
Identity = 116/201 (57.71%), Postives = 153/201 (76.12%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSD---TSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWW 198
            MFVL+ELK  VR+P ++  + L DA+ +E+NRK++NKV LNVGL + L DI +I +S++FPGDGASHT V FR +VFRPFMEEI+ GKI+SCS DGV ++LGFFEDI +PP  LQ+P RFD+ +Q WVWEY T DG KHDLFMD GE IRFRV S++F++   T PN++   E+SE  +   PYT+  +++ PGLGL+ WW
Sbjct:    1 MFVLAELKDTVRIPPAEFKQKLNDAITDELNRKLANKVYLNVGLCIALHDITKIEESYIFPGDGASHTKVIFRYIVFRPFMEEILIGKIRSCSIDGVHVTLGFFEDIVIPPHKLQHPSRFDQMEQAWVWEYDTGDGEKHDLFMDAGEIIRFRVVSETFTEALPTGPNISGETETSEAKNIS-PYTLGGAIDEPGLGLLTWW 200
[Close]
BLAST of EMLSAG00000000471 vs. Select Arthropod Genomes
Match: gb|EEZ99545.1| (DNA-directed RNA polymerase III subunit RPC8-like Protein [Tribolium castaneum])

HSP 1 Score: 248.054 bits (632), Expect = 1.370e-83
Identity = 107/199 (53.77%), Postives = 155/199 (77.89%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWN 199
            MF+++E+K++ R+P       L DA+  E+N+K++NKVVLNVGL + L+DI  + +SF+FPGDGASHT V FR +VFRPF+EEI+ GKI+SCS++GV ++LGFF+DI +PP +LQ+P +F+E +Q WVWEY T DG KHDLFMD GE I+FRVT++ F++T P     +E+ + +  K+PY++T S+N PGLGL++WW+
Sbjct:    1 MFIVAEMKNVTRIPPELFNLKLNDAIAGELNKKLANKVVLNVGLCIALYDITSLQESFIFPGDGASHTRVSFRYIVFRPFIEEILVGKIRSCSQEGVHVTLGFFDDILIPPSALQHPSKFNETEQAWVWEYDTGDGCKHDLFMDAGETIKFRVTAEFFNETCP-TGSLQETQDKSENKVPYSLTGSINEPGLGLLSWWD 198
[Close]
BLAST of EMLSAG00000000471 vs. Select Arthropod Genomes
Match: EEB10445.1 (DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide, putative [Pediculus humanus corporis])

HSP 1 Score: 239.965 bits (611), Expect = 1.957e-80
Identity = 117/200 (58.50%), Postives = 156/200 (78.00%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNS--EKIPYTITASVNGPGLGLINWW 198
            MFVL+E+K  +R+      K L DA+ EEIN+K++NKVV+NVGL++ L+DI E+GDS + PGDG  HT V FR +VFRPF+ EI+ GK+KSCS++GV ++LGFF+DI +P  +LQ+P RFDEA+QVWVWEY   D  KHDLFMD GE IRFRVT+++F +TSP V P E SS+ +S   K+PY++TAS+N PGLGL++WW
Sbjct:    1 MFVLAEIKDYIRISPCNFHKPLKDAISEEINKKLANKVVMNVGLSIALWDISELGDSHIIPGDGCFHTRVCFRYVVFRPFLTEILVGKVKSCSQEGVVVTLGFFDDIIIPSSALQHPSRFDEAEQVWVWEYQV-DEEKHDLFMDIGEPIRFRVTAETFEETSP-VGP-ENSSDGDSVETKVPYSLTASINEPGLGLMSWW 197
[Close]
BLAST of EMLSAG00000000471 vs. Select Arthropod Genomes
Match: EAA00210.3 (AGAP012122-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 238.039 bits (606), Expect = 5.932e-79
Identity = 112/213 (52.58%), Postives = 152/213 (71.36%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEE---------------SSEPNSEKIPYTITASVNGPGLGLINWW 198
            MFVL+ELK  VR+     G  LP+A+++EINRK++NKV+LNVGL + L DI+++GDS + PGDGASHT V FR +VFRP + ++I GKI+SCS++GV I+LGFF+DI +PP +LQ+P R++EA+Q WVWEYP EDG  HDL+MD GE I+FRV+ + F ++SP   P +E               SS   S K PY I A++N  GLGL++WW
Sbjct:    1 MFVLAELKDNVRIAPELFGLKLPEAIKDEINRKLANKVLLNVGLCIALKDIVKLGDSIILPGDGASHTEVNFRYIVFRPMIGDVITGKIRSCSREGVHITLGFFDDILIPPSALQHPSRYEEAEQAWVWEYPLEDGNTHDLYMDIGENIKFRVSGEVFEESSPIGPPDQEVPSSSTGASTSGGAGSSGQESNKTPYRIVAAINESGLGLLSWW 213
[Close]
BLAST of EMLSAG00000000471 vs. Select Arthropod Genomes
Match: gb|EEC11553.1| (DNA-directed RNA polymerase subunit E', putative [Ixodes scapularis])

HSP 1 Score: 229.565 bits (584), Expect = 2.739e-76
Identity = 106/201 (52.74%), Postives = 154/201 (76.62%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNS--EKIPYTITASVNGPGLGLINWWN 199
            MFV+SE+   +R+P      +  DA+ E++NR+++NKVV+NVGL + LFD+ +I DS + PGDG+ HT V+FR +VFRPFM+E++ GKI+SCS++GV +S+GFF+DI +PP++LQ+P RFDEA+Q+WVWEY ++D  KHD+FMD GE+IRFRV +++F DTSP      E SE  S  ++IPY++T S++  GLGL+ WW 
Sbjct:    1 MFVISEMSDNIRIPPWLFRLNPNDAIVEQLNRRLANKVVINVGLCIALFDVTKIEDSKILPGDGSFHTTVEFRYVVFRPFMDEVLVGKIRSCSQEGVYVSMGFFDDILIPPDALQHPSRFDEAEQLWVWEYESDD-KKHDMFMDLGEQIRFRVVAETFVDTSPVGPEMAEMSENESKEKRIPYSLTGSISESGLGLLKWWT 200
[Close]
BLAST of EMLSAG00000000471 vs. Select Arthropod Genomes
Match: AGB94414.1 (CG7339, isoform B [Drosophila melanogaster])

HSP 1 Score: 229.18 bits (583), Expect = 1.295e-75
Identity = 108/213 (50.70%), Postives = 145/213 (68.08%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSE--------------KIPYTITASVNGPGLGLINWWN 199
            MFVL+ELK  VR+   Q    L DA+R+EI+RK++NKV+LNVGL + L DI+ + DS + PGDGASHT V FR +VFRP +  +I GKI++CS++GV ++LGFF+DI +P  +LQ+P RFDEA+Q WVWEYP EDG KHDLFMD GE I+FRV+ + F +TSP   P  E+                    K PY I  ++N  GLG+++WW+
Sbjct:    1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIILPGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIFEETSPIGPPKTEAQTQQGASTSAAVASATSQEVKTPYRIIGAINESGLGVLSWWD 213
[Close]
BLAST of EMLSAG00000000471 vs. Select Arthropod Genomes
Match: AAF50032.1 (CG7339, isoform A [Drosophila melanogaster])

HSP 1 Score: 229.18 bits (583), Expect = 1.295e-75
Identity = 108/213 (50.70%), Postives = 145/213 (68.08%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSE--------------KIPYTITASVNGPGLGLINWWN 199
            MFVL+ELK  VR+   Q    L DA+R+EI+RK++NKV+LNVGL + L DI+ + DS + PGDGASHT V FR +VFRP +  +I GKI++CS++GV ++LGFF+DI +P  +LQ+P RFDEA+Q WVWEYP EDG KHDLFMD GE I+FRV+ + F +TSP   P  E+                    K PY I  ++N  GLG+++WW+
Sbjct:    1 MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKDIVSLKDSIILPGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVTLGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIKFRVSREIFEETSPIGPPKTEAQTQQGASTSAAVASATSQEVKTPYRIIGAINESGLGVLSWWD 213
[Close]
BLAST of EMLSAG00000000471 vs. Select Arthropod Genomes
Match: EFX89005.1 (hypothetical protein DAPPUDRAFT_41099 [Daphnia pulex])

HSP 1 Score: 225.328 bits (573), Expect = 1.725e-74
Identity = 106/204 (51.96%), Postives = 153/204 (75.00%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSP----NVAPTEESSEP--NSEKIPYTITASVNGPGLGLINWW 198
            MFVL+ +K  VR+P+ +  + +  A+ EE+N K +NKVVL+VGL + L+DI++ G+SF+ PGD   HT V+FR +VFRPFME+I+ G+IK+C K+ VQ+SLGFF++I++  E+LQ   RFDE +Q WVWEY +ED GKHDLFMD GEEIRF+V ++ F+DT+P    N AP + S +P  +++++ Y I AS+N  GLGL++WW
Sbjct:    1 MFVLALVKQTVRVPSEKFNRDIDQAISEELNLKFANKVVLDVGLCIALWDIIKRGESFILPGDSGHHTKVEFRYVVFRPFMEQILVGRIKNCDKESVQVSLGFFDEIFISSENLQKNSRFDETEQTWVWEYQSED-GKHDLFMDTGEEIRFKVVAEYFADTTPSGPSNEAP-DSSLDPIRDNKRMAYRINASINESGLGLLSWW 202
[Close]
BLAST of EMLSAG00000000471 vs. Select Arthropod Genomes
Match: gb|KFM81263.1| (DNA-directed RNA polymerase III subunit RPC8, partial [Stegodyphus mimosarum])

HSP 1 Score: 212.616 bits (540), Expect = 1.260e-69
Identity = 101/201 (50.25%), Postives = 142/201 (70.65%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGK-HDLFMDPGEEIRFRVTSQSFSD-TSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWN 199
            MF L E+K  VR+   +  K L DA+ +E+  K +NKVV+NVGL + LF+I ++ +S++FPGDGASHT V F  +VFRPFM EI+ GKI+SCS++GV +S+GFF+DI +P + LQ+P RFDE +Q+WVW +  E+ G+ HDLFMD  E IRFRV  ++F D T  +       +E    +IPY +T S+N PGLGL++WW+
Sbjct:    1 MFTLVEMKDTVRIRPWRFHKPLQDAIADELRLKFANKVVMNVGLCIALFEITKLEESYIFPGDGASHTGVYFSYIVFRPFMNEILVGKIRSCSREGVHVSIGFFDDILIPQDVLQHPSRFDEKEQLWVWVFSNEESGQTHDLFMDRDEPIRFRVIDETFVDTTPTSPETETSDAEEKDRRIPYNLTGSINEPGLGLLSWWS 201
[Close]
BLAST of EMLSAG00000000471 vs. nr
Match: gi|290562083|gb|ADD38438.1| (DNA-directed RNA polymerase III subunit RPC8 [Lepeophtheirus salmonis])

HSP 1 Score: 410.223 bits (1053), Expect = 5.874e-145
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT 200
            MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT
Sbjct:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT 200
[Close]
BLAST of EMLSAG00000000471 vs. nr
Match: gi|225719760|gb|ACO15726.1| (DNA-directed RNA polymerase III subunit RPC8 [Caligus clemensi])

HSP 1 Score: 342.043 bits (876), Expect = 4.948e-118
Identity = 163/203 (80.30%), Postives = 185/203 (91.13%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEES---SEPNSEKIPYTITASVNGPGLGLINWWNT 200
            MFVLSE+KSL+RLPA QL + LP+AL EEINRK+SNKVVLNVGLAVCLFDILEIG+SF+FPGD ASHT V FR+LVFRPFMEE++NGKIKSCSKDGVQ+SLGFFEDIW+PPESLQ+PYRFDEADQVWVWEYPTEDG KHDLFMD GEEIRFRVT++SF DTSPNV P  ES    +P+S+K+PY+ITASVN PGLGL++WWNT
Sbjct:    1 MFVLSEVKSLIRLPALQLNRPLPEALSEEINRKLSNKVVLNVGLAVCLFDILEIGESFLFPGDEASHTRVVFRILVFRPFMEEVLNGKIKSCSKDGVQVSLGFFEDIWIPPESLQHPYRFDEADQVWVWEYPTEDGEKHDLFMDTGEEIRFRVTAESFIDTSPNVDPNPESRSTQQPDSDKLPYSITASVNEPGLGLLSWWNT 203
[Close]
BLAST of EMLSAG00000000471 vs. nr
Match: gi|225711416|gb|ACO11554.1| (DNA-directed RNA polymerase III subunit RPC8 [Caligus rogercresseyi])

HSP 1 Score: 339.347 bits (869), Expect = 7.106e-117
Identity = 161/201 (80.10%), Postives = 184/201 (91.54%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEE-SSEPNSEKIPYTITASVNGPGLGLINWWNT 200
            MFVLSE KSL+RLPA  LG++LP+AL EEINRK+SN+VV NVGLAVCLFDILEIG+SF+FPGDGASHT V FR+LVFRPFMEE+INGKIKSCSKDGVQ+SLGFFEDIW+PPE+LQ+PYRFDEADQVWVWEYPTEDG KHDLFMDPGEEIRFRVT+++FSDTSPNV P  E  S  +++KIPYTI+ASVN PGLGL +WWN+
Sbjct:    1 MFVLSECKSLIRLPALHLGRNLPEALSEEINRKLSNRVVHNVGLAVCLFDILEIGESFLFPGDGASHTRVNFRILVFRPFMEEVINGKIKSCSKDGVQVSLGFFEDIWIPPEALQHPYRFDEADQVWVWEYPTEDGEKHDLFMDPGEEIRFRVTAETFSDTSPNVDPNAEGQSGESNDKIPYTISASVNEPGLGLHSWWNS 201
[Close]
BLAST of EMLSAG00000000471 vs. nr
Match: gi|225711736|gb|ACO11714.1| (DNA-directed RNA polymerase III subunit RPC8 [Caligus rogercresseyi])

HSP 1 Score: 302.368 bits (773), Expect = 5.118e-102
Identity = 141/170 (82.94%), Postives = 158/170 (92.94%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEE 170
            MFVLSE KSL+RLPA  LG++LP+AL EEINRK+SN+VV NVGLAVCLFDILEIG+SF+ PGDGASHT V FR+LVFRPFMEE+INGKIKSCSKDGVQ+SLGFFEDIW+PPE+LQ+PYRFDEADQVWVWEYPTEDG KHDLFMDPGEEIRFRVT+++FSDTSPNV P  E
Sbjct:    1 MFVLSECKSLIRLPALHLGRNLPEALSEEINRKLSNRVVHNVGLAVCLFDILEIGESFLSPGDGASHTRVNFRILVFRPFMEEVINGKIKSCSKDGVQVSLGFFEDIWIPPEALQHPYRFDEADQVWVWEYPTEDGEKHDLFMDPGEEIRFRVTAETFSDTSPNVDPNAE 170
[Close]
BLAST of EMLSAG00000000471 vs. nr
Match: gi|1133418507|ref|XP_019864765.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Aethina tumida])

HSP 1 Score: 254.988 bits (650), Expect = 1.531e-83
Identity = 111/201 (55.22%), Postives = 159/201 (79.10%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPT--EESSEPNSEKIPYTITASVNGPGLGLINWWN 199
            MF+L+E+K++ R+P       L +A+  E+N+K++NKVVLNVGL + L+DI+ + +S++FPGDGASHT V FR +VFRPF+EEII GKI+SCS++GV ++LGFF+DI +PP +LQ+P +F+E +Q WVWEY T DG KHDLFMD GE IRFRVT+++F++T P   P   +E+ E +  K+PY++TAS+N PGLGL++WW+
Sbjct:    1 MFILAEMKNVTRIPPELFNLKLNEAIAGELNKKLANKVVLNVGLCIALYDIVSLQESYIFPGDGASHTRVNFRYIVFRPFVEEIIIGKIRSCSQEGVHVTLGFFDDILIPPSALQHPSKFNETEQAWVWEYDTGDGNKHDLFMDAGETIRFRVTAETFNETCPTGGPGTFQETQENHETKVPYSLTASINEPGLGLLSWWD 201
[Close]
BLAST of EMLSAG00000000471 vs. nr
Match: gi|646707949|gb|KDR14462.1| (DNA-directed RNA polymerase III subunit RPC8 [Zootermopsis nevadensis])

HSP 1 Score: 253.447 bits (646), Expect = 6.513e-83
Identity = 114/204 (55.88%), Postives = 154/204 (75.49%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSE------KIPYTITASVNGPGLGLINWW 198
            MFVL+E+K ++R P       L DA+ EE+N+K++NKVVLNVGL + L DI ++ DS++FPGDGA+HT V FR +VFRPF+EE+I GKI+SCS++GV ++LGFF+DI +PP +LQ+P RFDE +Q WVWEY T DG KHDLFMDPGE IRFRVT+++F +TSP+     + + P  E      K+PY +T S+N  GLGL++WW
Sbjct:    1 MFVLAEMKHVIRTPPHIFHLKLNDAIAEELNKKLANKVVLNVGLCIALHDITQLEDSYIFPGDGAAHTKVNFRYVVFRPFIEEVITGKIRSCSREGVHVTLGFFDDIIIPPNALQHPSRFDETEQAWVWEYNTGDGDKHDLFMDPGETIRFRVTAETFVETSPSGPENTDITTPGGETSAEEPKVPYMLTGSINESGLGLLSWW 204
[Close]
BLAST of EMLSAG00000000471 vs. nr
Match: gi|591305537|ref|XP_007079512.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Panthera tigris altaica] >gi|591305539|ref|XP_007079513.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Panthera tigris altaica])

HSP 1 Score: 253.062 bits (645), Expect = 9.429e-83
Identity = 118/204 (57.84%), Postives = 154/204 (75.49%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSP----NVAPTEESSEPNSEKIPYTITASVNGPGLGLINWWNT 200
            MFVL E+   VR+P  Q  + L D++ EE+N+K++NKVV NVGL +CLFDI ++ D++VFPGDGASHT V FR +VF PF++EI+ GKIK CS +GV +SLGFF+DI +PPESLQ P +FDEA+QVWVWEY TE+G  HDL+MD GEEIRFRV  +SF DTSP    +   T  S EP  ++ PYT+  S++ PGLGL++WW +
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGA-HDLYMDTGEEIRFRVVDESFVDTSPTGPGSAEATSSSEEPPKKEAPYTLVGSISEPGLGLLSWWTS 203
[Close]
BLAST of EMLSAG00000000471 vs. nr
Match: gi|543263003|ref|XP_005421928.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Geospiza fortis])

HSP 1 Score: 253.062 bits (645), Expect = 1.019e-82
Identity = 116/205 (56.59%), Postives = 157/205 (76.59%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNS------EKIPYTITASVNGPGLGLINWWN 199
            MFVL E+   VR+P  Q  + L +++ EE+N+K++NKVV NVGL +CL+DI ++ DS++FPGDGASHT V FR +VFRPF++EI+ G+IKSCS+DGV +SLGFF+DI +PPESLQ P +FDEA+QVWVWEY TE+G  HDL+MD GEEIRFRV  ++F DTSP    + E+S  N+      ++ PYT+  S++ PGLGL++WW 
Sbjct:    1 MFVLVEMTDTVRIPPWQFERKLNESIAEELNKKLANKVVYNVGLCICLYDITKLEDSYIFPGDGASHTKVHFRYVVFRPFLDEILIGQIKSCSQDGVHVSLGFFDDIVIPPESLQQPAKFDEAEQVWVWEYETEEGA-HDLYMDIGEEIRFRVVDETFVDTSPTGPSSAEASTSNAAEEVQKKEAPYTLVGSISEPGLGLLSWWT 204
[Close]
BLAST of EMLSAG00000000471 vs. nr
Match: gi|558168892|ref|XP_006098584.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Myotis lucifugus] >gi|558168896|ref|XP_006098585.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Myotis lucifugus])

HSP 1 Score: 251.906 bits (642), Expect = 2.119e-82
Identity = 118/204 (57.84%), Postives = 154/204 (75.49%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEE----SSEPNSEKIPYTITASVNGPGLGLINWWNT 200
            MFVL E+   VR+P  Q  + L D++ EE+N+K++NKVV NVGL +CLFDI ++ D++VFPGDGASHT V FR +VF PF++EI+ GKIK CS +GV +SLGFFEDI +PPESLQ P +FD+A+QVWVWEY TE+G  HDL+MD GEEIRFRV  +SF DTSP    + E    S EP  ++ PYT+  S++ PGLGL++WW +
Sbjct:    1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFEDILIPPESLQQPAKFDDAEQVWVWEYETEEGA-HDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEVASTSEEPPKKEAPYTLVGSISEPGLGLLSWWTS 203
[Close]
BLAST of EMLSAG00000000471 vs. nr
Match: gi|1080056514|ref|XP_018570002.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Anoplophora glabripennis])

HSP 1 Score: 251.906 bits (642), Expect = 2.603e-82
Identity = 110/200 (55.00%), Postives = 156/200 (78.00%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDALREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGDGASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNVAPTEESSEPNSE-KIPYTITASVNGPGLGLINWWN 199
            MF+L+E+K++ R+P       L DA+  E+N+K++NKVVLNVGL + LFDI+ + + F+FPGDGASHT V FR +VFRPF+EE++ GKI+SCS++GV ++LGFF+DI +PP +LQ+P +F+E +Q WVWEY T DG KHDLFMD GE IRFRVT++ F++T P    T + ++ N E K+PY++T S+N PGLGL++WW+
Sbjct:    1 MFILAEMKNVTRIPPELFNLKLNDAIAGELNKKLANKVVLNVGLCIALFDIVSLQECFIFPGDGASHTRVTFRYIVFRPFIEEVLIGKIRSCSQEGVHVTLGFFDDILIPPSALQHPSKFNETEQAWVWEYDTGDGSKHDLFMDAGESIRFRVTAEVFNETCPTGPATMQENQENVENKVPYSLTGSINEPGLGLLSWWD 200
[Close]
BLAST of EMLSAG00000000471 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold50_size457468-processed-gene-0.1 (protein:Tk03198 transcript:snap_masked-scaffold50_size457468-processed-gene-0.1-mRNA-1 annotation:"dna-directed rna polymerase iii subunit rpc8")

HSP 1 Score: 202.986 bits (515), Expect = 2.269e-65
Identity = 108/232 (46.55%), Postives = 145/232 (62.50%), Query Frame = 0 
Query:    1 MFVLSELKSLVRLPASQLGKSLPDA----------------------------------LREEINRKVSNKVVLNVGLAVCLFDILEIGDSFVFPGD--GASHTHVQFRLLVFRPFMEEIINGKIKSCSKDGVQISLGFFEDIWVPPESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNV---------APTEESSEPNSEKIPYTITASV 187
            MF+LS L SLVR+  S+  + LP+A                                  L + +N +++NKVV  +GL + ++D++ IGDS++ P D  GASHT V FR++VFRPF+EE++ GKIKSC++ GV +SLGFF+DI + PE+LQ+P RFDE +QVWVWEYPT D G HD+FMDPGE IRFRV S+ F DTSP+          A   + SEP  +KIPY + ASV
Sbjct:    1 MFILSRLSSLVRIVPSEWKRPLPEAPSDGDGRGQVRPEAEDRSLEAQALTPRADLMRWALTDALNVQLANKVVFELGLVLSVYDLVSIGDSYLLPMDLEGASHTRVTFRVVVFRPFVEEVLQGKIKSCTRQGVFVSLGFFDDILIKPEALQHPKRFDETEQVWVWEYPT-DEGHHDMFMDPGETIRFRVISEHFVDTSPSAPDLHPKDPSAALAQGSEPEDKKIPYLLHASV 231

HSP 2 Score: 103.99 bits (258), Expect = 3.632e-27
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 0 
Query:  111 PESLQNPYRFDEADQVWVWEYPTEDGGKHDLFMDPGEEIRFRVTSQSFSDTSPNV---------APTEESSEPNSEKIPYTITASVNGPGLGLINWWNT 200
            PE  + PY    +  VWVWEYPT D G HD+FMDPGE IRFRV S+ F DTSP+          A   + SEP  +KIPY + ASVN PGLGLI+WWN+
Sbjct:  218 PEDKKIPYLLHAS--VWVWEYPT-DEGHHDMFMDPGETIRFRVISEHFVDTSPSAPDLHPKDPSAALAQGSEPEDKKIPYLLHASVNEPGLGLISWWNS 313
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000471 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25
Match NameE-valueIdentityDescription
-7.876e-3834.55symbol:rpc25-2 "RNA polymerase III subunit" specie... [more]
-7.876e-3834.55symbol:rpc25-1 "RNA polymerase III subunit" specie... [more]
-5.583e-3736.59symbol:AT1G06790 "AT1G06790" species:3702 "Arabido... [more]
-7.342e-3457.14symbol:POLR3H "DNA-directed RNA polymerase III sub... [more]
-6.999e-2157.35symbol:POLR3H "DNA-directed RNA polymerase III sub... [more]

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BLAST of EMLSAG00000000471 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592860033|gb|GAXK01097529.1|6.416e-8860.00TSA: Calanus finmarchicus comp38167_c0_seq1 transc... [more]
gi|592890126|gb|GAXK01068249.1|1.692e-420.78TSA: Calanus finmarchicus comp17989_c0_seq1 transc... [more]
gi|592799496|gb|GAXK01155072.1|1.080e+028.17TSA: Calanus finmarchicus comp1485599_c0_seq1 tran... [more]
gi|592799495|gb|GAXK01155073.1|1.108e+028.17TSA: Calanus finmarchicus comp1485599_c0_seq2 tran... [more]
gi|592779557|gb|GAXK01175011.1|5.152e+033.33TSA: Calanus finmarchicus comp1118069_c0_seq3 tran... [more]
gi|592779559|gb|GAXK01175009.1|7.061e+032.26TSA: Calanus finmarchicus comp1118069_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000471 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004715.865e-147100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s106:81384... [more]
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BLAST of EMLSAG00000000471 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
gi|29428071|sp|Q9Y535.1|RPC8_HUMAN1.423e-8357.07RecName: Full=DNA-directed RNA polymerase III subu... [more]
gi|29427995|sp|Q9D2C6.2|RPC8_MOUSE6.729e-8157.07RecName: Full=DNA-directed RNA polymerase III subu... [more]
gi|122136999|sp|Q2T9X1.1|RPC8_BOVIN7.711e-8056.10RecName: Full=DNA-directed RNA polymerase III subu... [more]
gi|74582844|sp|O94285.1|RPC8_SCHPO6.569e-5340.89RecName: Full=DNA-directed RNA polymerase III subu... [more]
gi|549722|sp|P35718.1|RPC8_YEAST8.170e-4133.95RecName: Full=DNA-directed RNA polymerase III subu... [more]
gi|122057759|sp|Q557J3.1|RPC8_DICDI5.019e-3934.55RecName: Full=DNA-directed RNA polymerase III subu... [more]
gi|73920767|sp|P39466.2|RPOE_SULAC9.090e-1322.61RecName: Full=DNA-directed RNA polymerase subunit ... [more]
gi|2500642|sp|Q57840.1|RPOE1_METJA1.398e-921.32RecName: Full=DNA-directed RNA polymerase subunit ... [more]
gi|464672|sp|P34087.1|RPB7_YEAST1.437e-926.92RecName: Full=DNA-directed RNA polymerase II subun... [more]
gi|3334317|sp|O14459.1|RPB7_SCHPO9.929e-826.67RecName: Full=DNA-directed RNA polymerase II subun... [more]
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BLAST of EMLSAG00000000471 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 9
Match NameE-valueIdentityDescription
XP_394665.18.487e-8457.71PREDICTED: DNA-directed RNA polymerase III subunit... [more]
gb|EEZ99545.1|1.370e-8353.77DNA-directed RNA polymerase III subunit RPC8-like ... [more]
EEB10445.11.957e-8058.50DNA-directed RNA polymerase III subunit 22.9 kDa p... [more]
EAA00210.35.932e-7952.58AGAP012122-PA [Anopheles gambiae str. PEST][more]
gb|EEC11553.1|2.739e-7652.74DNA-directed RNA polymerase subunit E', putative [... [more]
AGB94414.11.295e-7550.70CG7339, isoform B [Drosophila melanogaster][more]
AAF50032.11.295e-7550.70CG7339, isoform A [Drosophila melanogaster][more]
EFX89005.11.725e-7451.96hypothetical protein DAPPUDRAFT_41099 [Daphnia pul... [more]
gb|KFM81263.1|1.260e-6950.25DNA-directed RNA polymerase III subunit RPC8, part... [more]
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BLAST of EMLSAG00000000471 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|290562083|gb|ADD38438.1|5.874e-145100.00DNA-directed RNA polymerase III subunit RPC8 [Lepe... [more]
gi|225719760|gb|ACO15726.1|4.948e-11880.30DNA-directed RNA polymerase III subunit RPC8 [Cali... [more]
gi|225711416|gb|ACO11554.1|7.106e-11780.10DNA-directed RNA polymerase III subunit RPC8 [Cali... [more]
gi|225711736|gb|ACO11714.1|5.118e-10282.94DNA-directed RNA polymerase III subunit RPC8 [Cali... [more]
gi|1133418507|ref|XP_019864765.1|1.531e-8355.22PREDICTED: DNA-directed RNA polymerase III subunit... [more]
gi|646707949|gb|KDR14462.1|6.513e-8355.88DNA-directed RNA polymerase III subunit RPC8 [Zoot... [more]
gi|591305537|ref|XP_007079512.1|9.429e-8357.84PREDICTED: DNA-directed RNA polymerase III subunit... [more]
gi|543263003|ref|XP_005421928.1|1.019e-8256.59PREDICTED: DNA-directed RNA polymerase III subunit... [more]
gi|558168892|ref|XP_006098584.1|2.119e-8257.84PREDICTED: DNA-directed RNA polymerase III subunit... [more]
gi|1080056514|ref|XP_018570002.1|2.603e-8255.00PREDICTED: DNA-directed RNA polymerase III subunit... [more]

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BLAST of EMLSAG00000000471 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
snap_masked-scaffold50_size457468-processed-gene-0.12.269e-6546.55protein:Tk03198 transcript:snap_masked-scaffold50_... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s106supercontigLSalAtl2s106:813843..814445 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s106-processed-gene-8.4
Biotypeprotein_coding
EvidenceIEA
NoteDNA-directed RNA polymerase III subunit RPC8
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000471 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000471EMLSAT00000000471-696318Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s106:813843..814445+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000471-683237 ID=EMLSAG00000000471-683237|Name=EMLSAG00000000471|organism=Lepeophtheirus salmonis|type=gene|length=603bp|location=Sequence derived from alignment at LSalAtl2s106:813843..814445+ (Lepeophtheirus salmonis)
ATGTTCGTGTTATCGGAATTGAAGTCATTGGTTCGTCTTCCAGCGTCTCA
ACTCGGGAAATCTCTGCCCGATGCTTTACGAGAGGAAATCAATCGTAAAG
TATCCAACAAAGTTGTGTTGAATGTTGGATTAGCAGTTTGTCTCTTTGAT
ATCCTTGAAATCGGGGATTCCTTTGTATTTCCTGGGGATGGAGCCTCCCA
TACACATGTTCAATTCCGACTACTCGTATTTCGTCCATTTATGGAAGAGA
TCATCAATGGGAAAATCAAATCTTGCTCAAAAGACGGAGTTCAAATCTCC
CTGGGTTTCTTTGAGGACATTTGGGTCCCTCCCGAGTCACTACAAAACCC
TTATCGATTTGATGAAGCAGATCAAGTTTGGGTCTGGGAATACCCGACAG
AAGATGGGGGAAAACATGATCTCTTTATGGATCCTGGGGAAGAAATTCGA
TTCAGAGTCACTTCCCAATCCTTTTCCGACACATCTCCAAATGTAGCGCC
CACTGAGGAATCAAGTGAGCCTAACTCTGAGAAAATACCTTATACCATCA
CTGCCTCTGTAAATGGACCCGGTCTAGGATTAATAAATTGGTGGAATACT
TAG
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