EMLSAG00000000476, EMLSAG00000000476-683242 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000476
Unique NameEMLSAG00000000476-683242
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000476 vs. GO
Match: - (symbol:jing "jing" species:7227 "Drosophila melanogaster" [GO:0007382 "specification of segmental identity, maxillary segment" evidence=IGI;IEP] [GO:0005634 "nucleus" evidence=ISS;IDA;NAS] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS] [GO:0006355 "regulation of transcription, DNA-templated" evidence=NAS] [GO:0007298 "border follicle cell migration" evidence=IMP] [GO:0007417 "central nervous system development" evidence=IMP] [GO:0007424 "open tracheal system development" evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0007418 "ventral midline development" evidence=IMP] [GO:0007479 "leg disc proximal/distal pattern formation" evidence=IMP] [GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP] [GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP] [GO:0007411 "axon guidance" evidence=IMP] [GO:0042246 "tissue regeneration" evidence=IMP] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP] [GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP] [GO:0035098 "ESC/E(Z) complex" evidence=IDA] InterPro:IPR007087 InterPro:IPR013087 PROSITE:PS00028 PROSITE:PS50157 InterPro:IPR015880 EMBL:AE013599 GO:GO:0007411 GO:GO:0046872 GO:GO:0007474 GO:GO:0045944 GO:GO:0006351 GO:GO:0016568 GO:GO:0003676 GO:GO:0000122 GO:GO:0007298 SMART:SM00355 Gene3D:3.30.160.60 GO:GO:0042246 eggNOG:NOG291563 GeneTree:ENSGT00510000048519 OrthoDB:EOG70W3DN GO:GO:0035098 GO:GO:0007479 GO:GO:0008347 GO:GO:0007424 GO:GO:0007418 GO:GO:0007382 EMBL:AF356082 EMBL:AF285778 EMBL:AY061438 EMBL:BT025201 RefSeq:NP_001097199.1 RefSeq:NP_995749.2 UniGene:Dm.5288 ProteinModelPortal:Q7KHG2 SMR:Q7KHG2 BioGrid:61456 PaxDb:Q7KHG2 PRIDE:Q7KHG2 EnsemblMetazoa:FBtr0114364 EnsemblMetazoa:FBtr0301636 GeneID:35555 KEGG:dme:Dmel_CG9397 UCSC:CG9397-RD CTD:35555 FlyBase:FBgn0086655 InParanoid:Q7KHG2 GenomeRNAi:35555 NextBio:794011 PRO:PR:Q7KHG2 Bgee:Q7KHG2 Uniprot:Q7KHG2)

HSP 1 Score: 47.7506 bits (112), Expect = 6.493e-6
Identity = 33/95 (34.74%), Postives = 45/95 (47.37%), Query Frame = 0
Query:   15 KNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEKSKRAYSVEEDWEDEGGEDVIKFTIASVKGFRKRMNSEGISMREALVMWAPENI 109
            K L++ G KL+YRR  FSAR+FD FD G+M         L+   R  S   +     G   I+F     +   +R NS+G    E  V W+P  I
Sbjct: 1260 KQLRKNGKKLRYRRQPFSARMFDFFDTGIME-------GLQHRLRQISTLTN-----GAQAIEF---QGQCMMRRRNSQG--GYECFVRWSPREI 1337          
BLAST of EMLSAG00000000476 vs. C. finmarchicus
Match: gi|592884241|gb|GAXK01074134.1| (TSA: Calanus finmarchicus comp122579_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 58.151 bits (139), Expect = 8.996e-10
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0
Query:   13 SSKNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEKS 57
            + K LKRAGVKLK+R+  FSARIFD FD G+MS I+  V A+EK+
Sbjct: 1869 ARKRLKRAGVKLKFRQLPFSARIFDFFDAGMMSGIRHQVAAMEKT 2003          
BLAST of EMLSAG00000000476 vs. C. finmarchicus
Match: gi|592884242|gb|GAXK01074133.1| (TSA: Calanus finmarchicus comp122579_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 58.151 bits (139), Expect = 9.114e-10
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0
Query:   13 SSKNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEKS 57
            + K LKRAGVKLK+R+  FSARIFD FD G+MS I+  V A+EK+
Sbjct: 2062 ARKRLKRAGVKLKFRQLPFSARIFDFFDAGMMSGIRHQVAAMEKT 2196          
BLAST of EMLSAG00000000476 vs. L. salmonis peptides
Match: EMLSAP00000000476 (pep:novel supercontig:LSalAtl2s:LSalAtl2s106:945027:947263:-1 gene:EMLSAG00000000476 transcript:EMLSAT00000000476 description:"snap_masked-LSalAtl2s106-processed-gene-9.8")

HSP 1 Score: 220.32 bits (560), Expect = 4.330e-75
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query:    1 MAKKILAENPSESSKNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEKSKRAYSVEEDWEDEGGEDVIKFTIASVKGFRKRMNSEGISMREALVMWAPENIT 110
            MAKKILAENPSESSKNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEKSKRAYSVEEDWEDEGGEDVIKFTIASVKGFRKRMNSEGISMREALVMWAPENIT
Sbjct:    1 MAKKILAENPSESSKNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEKSKRAYSVEEDWEDEGGEDVIKFTIASVKGFRKRMNSEGISMREALVMWAPENIT 110          
BLAST of EMLSAG00000000476 vs. L. salmonis peptides
Match: EMLSAP00000000351 (pep:novel supercontig:LSalAtl2s:LSalAtl2s104:881623:937686:1 gene:EMLSAG00000000351 transcript:EMLSAT00000000351 description:"maker-LSalAtl2s104-augustus-gene-8.15")

HSP 1 Score: 59.3066 bits (142), Expect = 3.000e-11
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 0
Query:   10 PSESSKNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEKSKRAYSVEED 66
            P   SK +K+AG KLKYR+T+FSAR+FD+FDIG+M+ ++  + A+E +     V++D
Sbjct:  925 PKVVSKVMKKAGRKLKYRKTIFSARLFDLFDIGIMAQLQEKLAAIE-TNSCCKVDQD 980          
BLAST of EMLSAG00000000476 vs. nr
Match: gi|1058030555|gb|JAS18939.1| (hypothetical protein g.35359 [Clastoptera arizonana])

HSP 1 Score: 59.6918 bits (143), Expect = 7.137e-9
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 0
Query:    2 AKKILAENPSESSKNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEKSKRAYSVEEDWEDEGGEDVIKFTIASVKGFRKRMNSEGISMREALVMWAPENI 109
            A+K L   P+   K  +R G KL+YRR  FSAR+FD FD+G+M  ++ S++ + +++   SV ED     G  +  F+    K   +R   +G   ++ L+ W P N+
Sbjct:   22 ARKSLEATPN---KLFRRNGKKLRYRRQPFSARMFDYFDVGIMEKLQHSLMKMTEARTLGSVSED----KGNTITLFS----KLIARRTGQDG--SKQVLLRWFPPNV 116          
BLAST of EMLSAG00000000476 vs. nr
Match: gi|1058024505|gb|JAS15914.1| (hypothetical protein g.35358 [Clastoptera arizonana])

HSP 1 Score: 58.5362 bits (140), Expect = 8.905e-8
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 0
Query:    2 AKKILAENPSESSKNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEKSKRAYSVEEDWEDEGGEDVIKFTIASVKGFRKRMNSEGISMREALVMWAPENI 109
            A+K L   P+   K  +R G KL+YRR  FSAR+FD FD+G+M  ++ S++ + +++   SV ED     G  +  F+    K   +R   +G   ++ L+ W P N+
Sbjct:  393 ARKSLEATPN---KLFRRNGKKLRYRRQPFSARMFDYFDVGIMEKLQHSLMKMTEARTLGSVSED----KGNTITLFS----KLIARRTGQDG--SKQVLLRWFPPNV 487          
BLAST of EMLSAG00000000476 vs. nr
Match: gi|1058050171|gb|JAS28747.1| (hypothetical protein g.35357, partial [Clastoptera arizonana])

HSP 1 Score: 58.151 bits (139), Expect = 1.389e-7
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 0
Query:    2 AKKILAENPSESSKNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEKSKRAYSVEEDWEDEGGEDVIKFTIASVKGFRKRMNSEGISMREALVMWAPENI 109
            A+K L   P+   K  +R G KL+YRR  FSAR+FD FD+G+M  ++ S++ + +++   SV ED     G  +  F+    K   +R   +G   ++ L+ W P N+
Sbjct:  561 ARKSLEATPN---KLFRRNGKKLRYRRQPFSARMFDYFDVGIMEKLQHSLMKMTEARTLGSVSED----KGNTITLFS----KLIARRTGQDG--SKQVLLRWFPPNV 655          
BLAST of EMLSAG00000000476 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold110_size354795-snap-gene-1.5 (protein:Tk03431 transcript:maker-scaffold110_size354795-snap-gene-1.5-mRNA-1 annotation:"hypothetical protein L798_08557")

HSP 1 Score: 81.6481 bits (200), Expect = 1.216e-19
Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = 0
Query:    2 AKKILAENPSESSKNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLALEK--SKRAYSVEEDWEDEGGEDVIKFTIASVK-GFRKRMNSEGISMREALVMWAPENI 109
            ++K    N S+S+KNL+RAGVKLK+R TVFSARIFD FD G+M+ IK  V  LE+  S+R       +   G     K  I SVK GF      E    R ALV W+PEN+
Sbjct:  485 SRKYADHNQSQSTKNLRRAGVKLKFRHTVFSARIFDFFDPGIMAGIKHQVYNLERIGSQR-------FNISGDAITFKSKILSVKHGFSHYKLDEHAPSRLALVRWSPENL 588          
BLAST of EMLSAG00000000476 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold408_size180710-processed-gene-0.13 (protein:Tk05213 transcript:snap_masked-scaffold408_size180710-processed-gene-0.13-mRNA-1 annotation:"hypothetical protein L798_08557")

HSP 1 Score: 51.2174 bits (121), Expect = 5.541e-9
Identity = 20/40 (50.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:   15 KNLKRAGVKLKYRRTVFSARIFDVFDIGVMSSIKASVLAL 54
            K++++AG KLKYR+T++SARIFD+FD+G+M+ ++  +  L
Sbjct:  479 KSMRKAGRKLKYRQTIYSARIFDLFDLGMMAKMQEQIARL 518          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000476 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-6.493e-634.74symbol:jing "jing" species:7227 "Drosophila melano... [more]
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BLAST of EMLSAG00000000476 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592884241|gb|GAXK01074134.1|8.996e-1062.22TSA: Calanus finmarchicus comp122579_c1_seq2 trans... [more]
gi|592884242|gb|GAXK01074133.1|9.114e-1062.22TSA: Calanus finmarchicus comp122579_c1_seq1 trans... [more]
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BLAST of EMLSAG00000000476 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000004764.330e-75100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s106:94502... [more]
EMLSAP000000003513.000e-1147.37pep:novel supercontig:LSalAtl2s:LSalAtl2s104:88162... [more]
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BLAST of EMLSAG00000000476 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000476 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000476 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|1058030555|gb|JAS18939.1|7.137e-933.33hypothetical protein g.35359 [Clastoptera arizonan... [more]
gi|1058024505|gb|JAS15914.1|8.905e-833.33hypothetical protein g.35358 [Clastoptera arizonan... [more]
gi|1058050171|gb|JAS28747.1|1.389e-733.33hypothetical protein g.35357, partial [Clastoptera... [more]
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BLAST of EMLSAG00000000476 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold110_size354795-snap-gene-1.51.216e-1946.85protein:Tk03431 transcript:maker-scaffold110_size3... [more]
snap_masked-scaffold408_size180710-processed-gene-0.135.541e-950.00protein:Tk05213 transcript:snap_masked-scaffold408... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s106supercontigLSalAtl2s106:945027..947263 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s106-processed-gene-9.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000476 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000476EMLSAT00000000476-696323Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s106:945027..947263-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000476-683242 ID=EMLSAG00000000476-683242|Name=EMLSAG00000000476|organism=Lepeophtheirus salmonis|type=gene|length=2237bp|location=Sequence derived from alignment at LSalAtl2s106:945027..947263- (Lepeophtheirus salmonis)
ATGGCCAAGAAAATCCTTGCAGAAAACCCCTCAGAGTCATCCAAAAATCT CAAACGGGCTGGAGTGAAACTCAAATATCGAAGAACCGTGTTCTCAGCTC GGATATTTGATGTTTTCGATATTGGAGTCATGTCTTCAATCAAGGCTTCT GTTCTGGCGTTGGAGAAGAGCAAACGAGCTTACTCTGTTGAGGAGGATTG GGAGGATGAAGGTGGGGAGGATGTGATTAAGTTTACTATTGCCTCTGTGA AGGGATTTCGAAAGAGAATGAATTCCGAAGGGATCTCGATGCGGGAGGCT CTCGTGATGTGGGCTCCAGAGAACATGTAAGTACTGACATTTTAAAAATT ACTCCTTGTGAGGTCTTCTGCTTATTCCTTGTTGTTGTTCTACAATGAAG TAATGAGACTTTTGATAAAGATCTCTTGACTGGGGTTAGCTCCAAAAATA TATTTATTTTTTTTCATTTTGGAAAAGGAGAGAAAATTATGTACAACGAT ATAAAACTGACGCGTGTCGTCATCAAACATAATAAATTGTTTTACTTGAT ATGAAATTATTATTTTTAATAATAAAGACATAATTGTAATTAAAGGNAGG GGGAGTGGAGGMATGTGTGTGTGTATGAGGGGGGGGGGGTGGATAGGMAA AACAAAGAAAAACGAAAAACAAATACTTTCAACAAAACGAAACATTAAAC AAAAAAATGTACTTATTGAAGTTCCTTTCTTATTTGAAGAATATGGTTTT AAATTAGTGTTGTCAAGATCAGGACCGTTGTCCAGGCCGCCTTAGCATAA TGGTAGGCCCTGTGGCATATTTTGCACATCAGTTCTTAACTTGGTACTCC CCTTGACTAAGCCCAGTTTATTCCTTGCGTTAAATCGGCCCTACCAATTG GACAGTTGTCCCCTATCCTACGGATATGGCAGMTGAAAAAATGGGYTATA AGMCGGGYAATTTGTTGTATATTGCGTTAGAGTCAAGGGTCTTTTTTAAT TCAATAACCAGGGAAAATGAAATGTATTTATTAAAAAAGTAAATGTAATT CAAAGGAACATGTTTTTTTTTTCGAAATTTAAGAAAAATGTTAAGGACAA AGTATAAAAGTTTGTAATTACTATACATAATTATGTATTATTACCTATAA TTATATGTATCTTAGGTGTAGTACCTGACATTGCCTGGAGTTAAGGCGTT GACAAACATACATATTTTGCTTCTAGAACATAAAGGATAAATCCCCAATA CATCCTGGTCCGTTGATCATGAACGCTCTCACACGTAGCTACCTACTCGA TACTTAAACGTCCTTAAACTCGTTGCTAAACCTAATCTAAAGTCAAATTC GCTTTTGTAAATGTTAAAAAATGTCCTATTTTTGATTTTTTTATATGAGC TGAACTAAACGAGATTTAATTCATTTTAAACGTGGCTAAAAAGTCCCGCC CTTCACAAAAAGATGGCCCTATTTTTTTTTTTTAATTCTCCTCATTTTCA ATTAATCCCGACCTTCAAAAGGCAGCTGTCAAAATGTCATGACAATCTAT TATTTAGTAGATGAGTTTTTGCTAACTGTTAAAATTAATATAATATTATT TTTTACATAGATTGGAGGATGAATGGATCGAGGCCACAGGACTGAAGGAT CTAGAAAAAGTTGTTCGACTACGTGAACTACCCGTGGAGTCCAGGGATGT TCTTGGAAAGGCTCTTTTTGGATCTACAGAATCCAAGTCACGACGAAAGC GGGCCAAAACCCTCGTTGTATCCTGATTGATCTCAGAGGAGCAATTTAGC TATCATCTCATTTAGATATATATATATATATATATATAACAACCAACGGA CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATA TATATATATATATATATAACAACCAACGGCTATTCCACCTATGAATATTT GATTATATTTTTTTGTTCAAAAAACTGTGATATTTGAAATATGAAAAAAA AAAACTTATATATTTATATATTTTTTTTAGTACCTGA
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