EMLSAG00000000533, EMLSAG00000000533-683299 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Match: gi|592784689|gb|GAXK01169879.1| (TSA: Calanus finmarchicus comp1797_c12_seq5 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 3.780e+0 Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 0 Query: 37 PRKVLYPTISIYMSSFQQHLFW 58 PR+ +PT+S SF+Q L W Sbjct: 977 PRRCQFPTLSTVGRSFRQSLLW 1042
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Match: gi|592940843|gb|GAXK01017710.1| (TSA: Calanus finmarchicus comp1393477_c0_seq6 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 3.823e+0 Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 0 Query: 11 KVLKIGHCSLNLFKKEMKELMCVRCQPRKV 40 +V K C L KKE +++ C RCQ KV Sbjct: 651 RVSKCLSCKLAEMKKEKRKVDCKRCQAYKV 740
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Match: gi|592784691|gb|GAXK01169877.1| (TSA: Calanus finmarchicus comp1797_c12_seq3 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 3.857e+0 Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 0 Query: 37 PRKVLYPTISIYMSSFQQHLFW 58 PR+ +PT+S SF+Q L W Sbjct: 1208 PRRCQFPTLSTVGRSFRQSLLW 1273
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Match: gi|592940841|gb|GAXK01017712.1| (TSA: Calanus finmarchicus comp1393477_c0_seq8 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 4.352e+0 Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 0 Query: 11 KVLKIGHCSLNLFKKEMKELMCVRCQPRKV 40 +V K C L KKE +++ C RCQ KV Sbjct: 651 RVSKCLSCKLAEMKKEKRKVDCKRCQAYKV 740
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Match: gi|592819984|gb|GAXK01134584.1| (TSA: Calanus finmarchicus comp93036_c4_seq3 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 4.848e+0 Identity = 9/23 (39.13%), Postives = 15/23 (65.22%), Query Frame = 0 Query: 21 NLFKKEMKELMCVRCQPRKVLYP 43 N+FK E K C++CQ + ++ P Sbjct: 1218 NIFKGEFKHKFCLKCQSKDIIIP 1286
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Match: gi|592837064|gb|GAXK01120480.1| (TSA: Calanus finmarchicus comp8922949_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 4.975e+0 Identity = 10/34 (29.41%), Postives = 17/34 (50.00%), Query Frame = 0 Query: 30 LMCVRCQPRKVLYPTISIYMSSFQQHLFWEVTNI 63 + C+ C P VL+P + + FQ + W N+ Sbjct: 58 MFCISCHPSLVLWPDLCLSWCCFQMYHRWFSCNL 159
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Match: gi|592819986|gb|GAXK01134582.1| (TSA: Calanus finmarchicus comp93036_c4_seq1 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 5.079e+0 Identity = 9/23 (39.13%), Postives = 15/23 (65.22%), Query Frame = 0 Query: 21 NLFKKEMKELMCVRCQPRKVLYP 43 N+FK E K C++CQ + ++ P Sbjct: 3371 NIFKGEFKHKFCLKCQSKDIIIP 3439
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Match: gi|592790832|gb|GAXK01163736.1| (TSA: Calanus finmarchicus comp982842_c1_seq4 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 6.689e+0 Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 0 Query: 47 IYMS----SFQQHLFWEVTNIIHR 66 IYM +F +HLFW++TN+ R Sbjct: 49 IYMGEQLQNFSEHLFWQITNVCAR 120
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Match: gi|592790833|gb|GAXK01163735.1| (TSA: Calanus finmarchicus comp982842_c1_seq3 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 6.695e+0 Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 0 Query: 47 IYMS----SFQQHLFWEVTNIIHR 66 IYM +F +HLFW++TN+ R Sbjct: 49 IYMGEQLQNFSEHLFWQITNVCAR 120
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Match: gi|592790834|gb|GAXK01163734.1| (TSA: Calanus finmarchicus comp982842_c1_seq2 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 6.713e+0 Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 0 Query: 47 IYMS----SFQQHLFWEVTNIIHR 66 IYM +F +HLFW++TN+ R Sbjct: 49 IYMGEQLQNFSEHLFWQITNVCAR 120
BLAST of EMLSAG00000000533 vs. L. salmonis peptides
Match: EMLSAP00000000533 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1085:23595:113753:1 gene:EMLSAG00000000533 transcript:EMLSAT00000000533 description:"maker-LSalAtl2s1085-augustus-gene-1.3") HSP 1 Score: 158.303 bits (399), Expect = 9.040e-52 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 Query: 1 MTRVLEYNDVKVLKIGHCSLNLFKKEMKELMCVRCQPRKVLYPTISIYMSSFQQHLFWEVTNIIHRLGMLFHSFA 75 MTRVLEYNDVKVLKIGHCSLNLFKKEMKELMCVRCQPRKVLYPTISIYMSSFQQHLFWEVTNIIHRLGMLFHSFA Sbjct: 1 MTRVLEYNDVKVLKIGHCSLNLFKKEMKELMCVRCQPRKVLYPTISIYMSSFQQHLFWEVTNIIHRLGMLFHSFA 75 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000533 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000533 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 11
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BLAST of EMLSAG00000000533 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000533 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000533 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000533 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000533 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1085:23595..113753+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000533-683299 ID=EMLSAG00000000533-683299|Name=EMLSAG00000000533|organism=Lepeophtheirus salmonis|type=gene|length=90159bp|location=Sequence derived from alignment at LSalAtl2s1085:23595..113753+ (Lepeophtheirus salmonis)back to top Add to Basket
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