EMLSAG00000000545, EMLSAG00000000545-683311 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000545
Unique NameEMLSAG00000000545-683311
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000545 vs. C. finmarchicus
Match: gi|592942970|gb|GAXK01015583.1| (TSA: Calanus finmarchicus comp1033358_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 1.537e-5
Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 0 
Query:   80 DVFVGFDNFEILKINDRDFTVEINA 104
            +V +G DNFEILKI+DRDFT+EINA
Sbjct:  456 EVQIGLDNFEILKIDDRDFTIEINA 530
[Close]
BLAST of EMLSAG00000000545 vs. C. finmarchicus
Match: gi|592759417|gb|GAXK01194996.1| (TSA: Calanus finmarchicus comp88240_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 5.530e+0
Identity = 15/54 (27.78%), Postives = 23/54 (42.59%), Query Frame = 0 
Query:    8 WIIKNPIKQAKCPFLLTDTLDKISNIFIKKVPLRPIQNVEKEHVRGKAQHPTYC 61
            W++K P  +  CP +++           KKV     Q   K H  G++ H T C
Sbjct: 1417 WVVKTPHNRNPCPHIVSQG---------KKVDSSSKQETSKYHTEGQSSHIT*C 1551
[Close]
BLAST of EMLSAG00000000545 vs. C. finmarchicus
Match: gi|592759418|gb|GAXK01194995.1| (TSA: Calanus finmarchicus comp88240_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 5.653e+0
Identity = 15/54 (27.78%), Postives = 23/54 (42.59%), Query Frame = 0 
Query:    8 WIIKNPIKQAKCPFLLTDTLDKISNIFIKKVPLRPIQNVEKEHVRGKAQHPTYC 61
            W++K P  +  CP +++           KKV     Q   K H  G++ H T C
Sbjct: 1987 WVVKTPHNRNPCPHIVSQG---------KKVDSSSKQETSKYHTEGQSSHIT*C 2121
[Close]
BLAST of EMLSAG00000000545 vs. L. salmonis peptides
Match: EMLSAP00000000545 (pep:novel supercontig:LSalAtl2s:LSalAtl2s108:195241:200995:1 gene:EMLSAG00000000545 transcript:EMLSAT00000000545 description:"snap_masked-LSalAtl2s108-processed-gene-3.8")

HSP 1 Score: 216.083 bits (549), Expect = 1.677e-73
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 
Query:    1 MNIFSNSWIIKNPIKQAKCPFLLTDTLDKISNIFIKKVPLRPIQNVEKEHVRGKAQHPTYCHFLKYVPPIFGSKSTRPLDVFVGFDNFEILKINDRDFTVEINAK 105
            MNIFSNSWIIKNPIKQAKCPFLLTDTLDKISNIFIKKVPLRPIQNVEKEHVRGKAQHPTYCHFLKYVPPIFGSKSTRPLDVFVGFDNFEILKINDRDFTVEINAK
Sbjct:    1 MNIFSNSWIIKNPIKQAKCPFLLTDTLDKISNIFIKKVPLRPIQNVEKEHVRGKAQHPTYCHFLKYVPPIFGSKSTRPLDVFVGFDNFEILKINDRDFTVEINAK 105
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000545 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000545 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592942970|gb|GAXK01015583.1|1.537e-576.00TSA: Calanus finmarchicus comp1033358_c0_seq1 tran... [more]
gi|592759417|gb|GAXK01194996.1|5.530e+027.78TSA: Calanus finmarchicus comp88240_c0_seq2 transc... [more]
gi|592759418|gb|GAXK01194995.1|5.653e+027.78TSA: Calanus finmarchicus comp88240_c0_seq1 transc... [more]
back to top
BLAST of EMLSAG00000000545 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005451.677e-73100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s108:19524... [more]
back to top
BLAST of EMLSAG00000000545 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000545 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000545 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000545 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s108supercontigLSalAtl2s108:195241..200995 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s108-processed-gene-3.8
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000545 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000545EMLSAT00000000545-696392Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s108:195241..200995+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000545-683311 ID=EMLSAG00000000545-683311|Name=EMLSAG00000000545|organism=Lepeophtheirus salmonis|type=gene|length=5755bp|location=Sequence derived from alignment at LSalAtl2s108:195241..200995+ (Lepeophtheirus salmonis)
ATGAACATCTTTTCCAACAGTTGGATAATAAAAGTAAGTTATAAAAACAT
TTAAATGCACGAGAGTCTTTAGAACAGAACCAAGACTCCATGATTTCATT
CAAAGAATAACAGTTATTCTGTCTGAAAACTACAATAGCACACCTCGTAC
TATTGGATTTTCCATAAGCTCTTTTAGTCAACTGCCTAGAATTTGAATGT
CGGTTTCTTTGACAAAGTATTTTAAGGTTTGAAACAAATATTGCATAACA
CACTTTGAACTTGCTACCCTTACTTTCCGGRACAAGAACATGGTCCACTG
GACCCAGCTCAGGCTCTTATTGTAAACCTTCCTCTTTGTTGTTGAATCAT
TTTCAAGACTCTAAAAAGGTATAATAATGACACCATTTTTGCCTGATTTA
ATGTTCAGTCCCATCTGTTTAATAAAACTGATGCGACAGAGAGTCGCTTA
GGGTACCAAAGCTAGAGTAATTTAGATAGTTTTAAGTCTGTTGGTCCAGC
GGATAGGTCTTGACGTTTTAAATATTGAACAAGTACCTAGAACTTTCAAG
AAGCTTTAACTCTAGGTAAAAGAGCCTCTTATTAAATATACCTCCCATGA
AACGAGTGGTATATTTAATCGGTTAGAGGAAATGTACCTCTAAGATAGAG
TCTTCTATTTTAATAAGAAGAATATATATTTAATAACAAATTCCACAATC
GCTCTCAATGGGTCAAAATCTTAATTGGCCCAAAATTTTTCAGAAAATTA
AAGGAAGATTGATATATCTTGTATATTGAGCGTCTTATGTCATCCCACAA
GATTTCGATAGCGTCTGTCTTGATTCCTTGAGATTGTCATTGTAATTTTA
GAGCCTCCAAGTAATCAGAGTCCTCACACTTTCTGTGTCTCCTACCGTGG
CTAGACTTAGAGACATGATTGAATTTTAATTATTGAATTCTCGTACTCTT
TTGTTAGAATCCAATAAAACAAGCAAAATGCCCCTTTCTTCTAACCGACA
CATTGGATAAGATCTCAAACATCTTCATTAAGTAAAAAATATTTGTTGTA
TTTTCGTTAAAAAATAATACACAAGAGTTTGTTTCAATAAATTTTAAACT
CTGGTAAACTGCCTTTAGCTCCAATTGATTTATATTCTGACCCTACTTTT
ATAAATATACAATATGCAACACTGTAATACATTGTTGTTGGTTTTTACAT
GTAAAAAGATAAATAATAAAATAACTAAGTCGGGACAATTAATACCAAAA
AAATAACAACTTTTTACTTGCCTCATTATTTTATACCTAGTTTATCAAAA
GAGAAGTATAGATAACGATTATACGCAAATTGATTTATGTACGTCAAGAA
GAAAGACTTATTTAACGTACTCAGAGTTAGGTTTTACTTTTTAAATTAAT
ATTTTTCGTATTTTTTTATAAGATATATTCGGTGTTTTTTATTTCGTTGG
GTAACATTCATTTTTTATTTAATTCGATTTTGAATTTATAGAAAAGTTCC
CTTACGTCCCATACAAAATGTAGAAAAAGAGCATGTTAGGGGAAAAGCTC
AACATCCTACATATTGCCATTTTCTCAAGTGATTTAAAATTATGATATAC
TCTTGCTCTAATCCTAAATATTAAAAAATATATTGAAGAGCTCAAACACC
TCTATTTAATATTCTTGTAAGCTTTGATGGTATAATAGTTATGATCATAT
AATATACATATATTATGCCTTTTGTGATGGTACAAATATACAAAATATTA
ATATATGAGCAAAGTAAACAATATCAAAAATATTAATAGATATTATTGCA
TTGTATTGGAATTATGGGAGTTACTATATACCTAAATATAGGCATAATGC
CGTGACAAAGTGTGATTACAAAAGAAAAAGGTTAATGAAAAGAAAATGGA
GTTTAGAAAGAAAAAACACAATGTTGTACATCAATCAAGCAGAATATCTA
TTTTCTTAATAACTGACTCATTAGTTCTTAATGATCCTTTTAAGAACAAG
CCAACATTTTACCAAAAACATTATAACCGAAATCCACTTCCCCAAATTCC
ATTTTACCAAACGGATACTTTGCCGAAAAGAATGATATATACAATAGATG
ATTATTTATGTTGCAATACTTAGTATGTTAATTACGATTCCAATCGGATT
AATCCAATTTTACTAGACTAAATTCTTAATTATTTACCACGAATTCTTAT
GATTAATTATTAATTGATTGAACAAGAAATTGTTATAAATACGGTCTCAA
ACCGCTATTTATACTGTTATTACATAAATCATTACAATCCCCCAAATATA
TAAATAAATTAGAAAGACAAAATATGTTTAAATAATAGAAGTAGTCAATC
ACTGAGATTCAATCGTTTCGGTCGAATGTGCTGGGGATCCTATTCACTTG
ATCAACCCCAGATTGACACTTCTCTATTTTGAGGTCGTTTCTGAATCTAT
AATTAGAAAATGTGTTTGTGATTGGATTAATTTAGTAGATAATTACATAG
TATTGAAGCATGAATCATCATCAAAGATTTTATTTTTGGACAAAGTGTCC
CTGAACCTTCAAAATCTATGCAATCTTTACTTATACCAGTTTGTTTACAA
AACGACCAAGTCTTGCAGAAAAATACGGATAATTTTATTTAATATATTTG
TAAATTTAAAATTGTATTTGGGGAGCACAAAAAATAAATTAAAAAGGAAT
ACCTTTTTTATGTAGCGCTGCAAACTTCATACGGTCACACAACCTTGCAG
ATAATGTATATTTTTAGAGTTTGCAATACCTATGAGATACATTTGTCTTG
TACCATCCAAAGATCTGTTACATTTATTCAAATACTAATTCGAGTACTTC
CTTAGGACTGCTTAGTCACCAATATAAAAATATATTTGCCCTTAGTAGTT
GTTACTATTATCATCATCGAACAAATTGAATACATTTTCCCATTGTTTTT
TATATCTCTGATTTCATAATGTAAAATAGTAGCTTGAAAAGCGATATTAC
ATTTTGTAGATTATAGAGGATGGACAATCTCTAATTTTCATGCAAATTGT
GAACATTTTGATGATACCATTGCGAATGTCTTTCCACAACTATCTTTTTT
TTGCAATATTCTTATACATATAAGTCGTTAACTTTCATTTTCATTATTTT
TTTCGAAAGAGCAAATATCTATTCAGTCTCTTGAATAGTTCCACAAAAAA
GGTTACTTGGTAGAAGGTGATAATTTTTGAAGAAGACATCTTATATATTG
CTCAAATATTAATTTAAATTGCAATAAAAAATTTAAATACAGAGCCGTAG
GGAGACCCCGTATCCCCTGCTTCCTCCTCTTACTCTTCTGTTTATGAATA
TTAACGAAAGGTATCGCTTTTCTTTCAACATCCCTCCTTCATTATTCTTC
CAGGAAATATCAATGACCACCAAAATAATGATTGTTTCCCTTTTAAGTGT
AACTTTAATGTATTGAGAAAAAAAAATACATCAAGTATTGTTAGAGTATT
TTGAAGGCTTCATCTATTCATTTAATGATTGAAATATATTTTCAAATGTG
AATATASTATATTTATGCTTTTCACGAAATGTAAAATAAATAAAAAAATA
CTTCATGTTCATTAATTGTCTTTTTTTATTTTTGCAGATATGTTCCACCA
ATATTTGGTAGTAAATCCACAAGGCCACTCGATGTCTTTGTCGGATTTGA
TAACTTTGAAATTCTTAAAATTAACGATAGGGATTTCACTGTTGAGATAA
ATGCGTATCTCATTGTCAAATGGAGTGACAAACGAATCCTTGTAGATTTT
TCTAAAGTGAGTTGACTATGCATTTATTAAGTACATGTATAATTTATTTG
CCAAACCTTATATGAATTCATTATTATTTTAATTTTATAAATGTGGCTTM
TCAAAACAAAAGCTTGCTAGAATGAATTTTCTCAAAATTGAATGTGGATT
ACATTTATATACAAATTATCGTCGATTTCTATCAAAAAATTATTTTTATT
TGCTCGTAAGGTGTACCCGCAATCTTATTATCTTATCTTATTTTTAAGTG
AGACTTTAGCAACACAAGTTCGTCAAAATGTGTCCTCCACAGACAGAGAG
ATAGACAAACTTTGCTTGATTTGAATATAGATAGTATTAAAATTAAGCAT
TGAGCTCTTATTATAGGTTTTCCCAATATATATATATGCGCCCTGGAGCC
TCTAAAGGTGAGAGTCCTGTTCATATTGAGAGAGACTTGATAGTTTAAAT
GTATATATGTTTGTTGAAATTATATTAATCCCTGAGAATTTCTGTACATG
GCAATTATAAAAATAACCAATGAAGGAACTTTGCTTTAACTTAAACCTTA
TAACTGATTCCAGCTCCCTTGTTTTAAAAAAGGTTTTATAAGCTATCACT
GATGCTATTGATGTACTGATCCATTATCAATTTAAAAAAAATGAATAAAA
TTCATTTTATAAATTTTGTTTTTTTATCTATTTTTATTATTAGGAGAAGC
ATAAATTAAATCAGGCAATCCAAGTATAAAGGTTCTCTTGAGACTAAGGT
TTTTTTTCGGAAATATCACTATATTACATTTAAATTATAAATAATATAAA
CAGGAAACTGTACCAAATAATTTTTTGGGTCTTTCATTTCGCTATTGGTT
AGTGGAATCAAAGTTGAGGAGGGGAAAAAATAGATAGATTAAATCCAGGA
AATATAAAAATAAGATCACTGATCATTGATTAAGATATTGTCCAGCATGA
TGATTTTACAGACCATCTGGGATAGAGATATTCTAGAATAATTTGCCCAG
ATAAGATTCTTTGGTGATAAGAGAAGGAAGAGGGAAGTCGAGCTGATGTC
TACAAAGAATGAAAGAATCAGCGATAATTCAAGTATAATATTAACTACTA
CTTACTTAAGTTATTACATAATGAGATAGGACAAAGGCCAAGTGAGATTA
ATCCAAGAAAAGAGATGTATCTTCGTTATGTATTTAATCCTGTTGATAGT
GAAAGTAGATACAGTAAAGAAATAAGAGGTATTTACCATAAATATTCCGC
CCAAAGCTGTGATTCATAAAGAAATATTGCTTTAATATTATCGATGGAGT
TGCTTCCATTTTTTCAAGCATCATTTAAGACCACGACTATGATTCATTAA
CATGCCACAAGTAATTGAGTACCTTCAAGATATATTTAACCCTTCCTGAT
CCGTAGTTTCTTACTCTTTCGTCCTTTTATTTATTAATTATTTCATCCCT
ATTTTCCTTTTTTTCCTGTCTCCTAGCTATAGGTATAATTAATCAGATCG
AGACTAAGCTAACAGTTAAGTACGAACCGATCAAGGTTAATAGAAATACA
AGGTTATACCATAACGCGCGTACAACTGATGTTTGAATTCCATCATGCTT
TCAATATTGACGTTATTGTAGATGAGTATTCCATGTTTTGTAAAAATCGG
GGTTTCTTGCCCAGCGGTTGGTACGATACATTAAATTTAAAATTATAGCA
ATAGTGACGTCATGGATTAGTATGCGTGGTTGCGTGTTTTTTTAAAATCT
GCCTGTTTTGCCCTGCAGTCGGTACGATACATCAAATTGAAAATTCTAGT
AAGCCCGATTACATGATTGTCTAACCTTTTATTTCTATTAACCTTCCGAA
CTGATAATAAAATAAAAAGGCCGCGAATTTGTCGCGTGGCAAATTTTGTT
GTTGCAAAATTAAACCATTCAACAAAAAAATATAGTTTTCATTTAAAGAA
AATAA
back to top
Add to Basket