EMLSAG00000000552, EMLSAG00000000552-683318 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000552
Unique NameEMLSAG00000000552-683318
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000552 vs. GO
Match: - (symbol:Q6IMN9 "Angiotensinogen" species:31033 "Takifugu rubripes" [GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IBA] [GO:0005615 "extracellular space" evidence=IBA] [GO:0010951 "negative regulation of endopeptidase activity" evidence=IBA] [GO:0030162 "regulation of proteolysis" evidence=IBA] InterPro:IPR000215 InterPro:IPR000227 PRINTS:PR00654 Pfam:PF00079 GO:GO:0005615 GO:GO:0004867 eggNOG:COG4826 GO:GO:0030162 InterPro:IPR023795 InterPro:IPR023796 PANTHER:PTHR11461 SMART:SM00093 SUPFAM:SSF56574 PROSITE:PS00284 GO:GO:0003081 KO:K09821 EMBL:BK001021 RefSeq:XP_003963811.1 ProteinModelPortal:Q6IMN9 STRING:31033.ENSTRUP00000027298 GeneID:101068970 KEGG:tru:101068970 HOGENOM:HOG000148591 Uniprot:Q6IMN9)

HSP 1 Score: 45.0542 bits (105), Expect = 4.978e-4
Identity = 40/145 (27.59%), Postives = 62/145 (42.76%), Query Frame = 0 
Query:   51 NVIQSSKVIIASSTILKLSWMNDLFSSANTEFQXLFHLGEKASDGSQSIVKVPFMKTVGQFPYIEKDNYKA--IALPLDSSIHKGRAILVLPQEKASLDRVESKIISNNVVYNKFVQEMSWINN-SVDNIEVLIPQLKDKDGHSI 192
            N+  SS ++  +S   + SW    F    T  Q  FH+ E  +      VK P M   GQ+ Y+    ++   + LPL     +   +LVLP E+  L  VESK+  N +          WI N S   +E+ +P+      H +
Sbjct:  244 NLNSSSNLLFLTSFNFQGSW-RTAFQPERTSMQE-FHINETTT------VKAPLMTHTGQYHYLNDKVHRCTIVKLPLSK---RSSMLLVLPHERTDLHNVESKLPKNII--------SDWIQNLSEGTLELTLPKFSMSSVHDM 369
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BLAST of EMLSAG00000000552 vs. C. finmarchicus
Match: gi|592876448|gb|GAXK01081129.1| (TSA: Calanus finmarchicus comp1418938_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.850e+0
Identity = 18/53 (33.96%), Postives = 29/53 (54.72%), Query Frame = 0 
Query:   46 VFHDNNVIQSSKVIIASSTILKLSWMNDLFSSANTEFQXLFHLGEKASDGSQS 98
            +F D N   ++KV++  S++  L+ +  L  S   EFQ L  +GEK   G Q+
Sbjct:    8 LFEDPNSSSAAKVLVIVSSLFLLASIIMLILSTVPEFQDLTSIGEKEDTGVQT 166
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BLAST of EMLSAG00000000552 vs. L. salmonis peptides
Match: EMLSAP00000000552 (pep:novel supercontig:LSalAtl2s:LSalAtl2s108:401973:404187:1 gene:EMLSAG00000000552 transcript:EMLSAT00000000552 description:"maker-LSalAtl2s108-augustus-gene-4.11")

HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 
Query:    1 MSMFRDVKSCHENINEWVLDEATRAEKYITNLTSNKNDISEGHASVFHDNNVIQSSKVIIASSTILKLSWMNDLFSSANTEFQXLFHLGEKASDGSQSIVKVPFMKTVGQFPYIEKDNYKAIALPLDSSIHKGRAILVLPQEKASLDRVESKIISNNVVYNKFVQEMSWINNSVDNIEVLIPQLKDKDGHSISGDEVYVFQDTYLEMIESSNSKISLPEVKNDRVLKFDKPFLLFVEIRDDLIAFGRIMNPNECNNCTIKKEKEQEEFYIV 271
            MSMFRDVKSCHENINEWVLDEATRAEKYITNLTSNKNDISEGHASVFHDNNVIQSSKVIIASSTILKLSWMNDLFSSANTEFQXLFHLGEKASDGSQSIVKVPFMKTVGQFPYIEKDNYKAIALPLDSSIHKGRAILVLPQEKASLDRVESKIISNNVVYNKFVQEMSWINNSVDNIEVLIPQLKDKDGHSISGDEVYVFQDTYLEMIESSNSKISLPEVKNDRVLKFDKPFLLFVEIRDDLIAFGRIMNPNECNNCTIKKEKEQEEFYIV
Sbjct:    1 MSMFRDVKSCHENINEWVLDEATRAEKYITNLTSNKNDISEGHASVFHDNNVIQSSKVIIASSTILKLSWMNDLFSSANTEFQXLFHLGEKASDGSQSIVKVPFMKTVGQFPYIEKDNYKAIALPLDSSIHKGRAILVLPQEKASLDRVESKIISNNVVYNKFVQEMSWINNSVDNIEVLIPQLKDKDGHSISGDEVYVFQDTYLEMIESSNSKISLPEVKNDRVLKFDKPFLLFVEIRDDLIAFGRIMNPNECNNCTIKKEKEQEEFYIV 271
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000552 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-4.978e-427.59symbol:Q6IMN9 "Angiotensinogen" species:31033 "Tak... [more]
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BLAST of EMLSAG00000000552 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592876448|gb|GAXK01081129.1|4.850e+033.96TSA: Calanus finmarchicus comp1418938_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000552 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000005520.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s108:40197... [more]
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BLAST of EMLSAG00000000552 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000552 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000552 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000552 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s108supercontigLSalAtl2s108:401973..404187 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s108-augustus-gene-4.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000552 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000552EMLSAT00000000552-696399Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s108:401973..404187+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000552-683318 ID=EMLSAG00000000552-683318|Name=EMLSAG00000000552|organism=Lepeophtheirus salmonis|type=gene|length=2215bp|location=Sequence derived from alignment at LSalAtl2s108:401973..404187+ (Lepeophtheirus salmonis)
TATAACATATATTTATTTTCATATCTTGTGTCATTCATTTCGATGTCCAT
GTTTAGGGATGTAAAATCTTGTCATGAAAATATAAATGAATGGGTCCTGG
ATGAAGCCACAAGGGCTGAAAAGTACATAACAAATCTCACTTCCAACAAA
AATGACATCTCTGAAGGGCATGCCTCTGTCTTTCACGACAATAACGTCAT
TCAGTCATCGAAGGTTATCATAGCTTCATCGACGATATTAAAGTTATCAT
GGATGAACGACTTATTTAGTAGTGCAAATACAGAATTCCAACAKCTCTTC
CATCTCGGAGAGAAAGCCTCCGATGGATCACAGTCTATTGTAAAAGTAAG
CTATATTTTTGAACAATAAATTAATAAAAAAGTACCTATTATTAATCAAT
GTTAAAGGTCCCTTTCATGAAAACTGTTGGTCAATTTCCTTACATTGAAA
AAGACAATTACAAGGCCATTGCCTTACCCTTAGATTCCTCGATACACAAA
GGACGTGCCATCCTCGTTTTGCCTCAAGAGAAAGCATCACTAGATCGAGT
TGAATCTAAAATTATAAGCAATAATGTTGTGTATAATAAATTTGTACAGG
AAATGAGCTGGATAAACAATAGTGTAGATAACATAGAGGTTCTTATTCCG
CAGTTAAAGGTTCAAATATCTCATGAATTTTCAATTCCTTCAAACCAAAA
GCTCAAGAATATTAAGGTATCTATATATAATAAACATTAAATTTTAATTT
TTTATTAGTCTAATCCCCTAAATTCGTTTATTTGTTAAGTAGATCAGTAT
GGTAATTAAAAGTTATTTTTTTGTTACATTTAGAAGTTGTTTAACACCTT
TGAAGTTATAAAACATAACTATTTGTTTGGAAATTTATTTTTCTTCTTCT
ATGATCATCCAAGTACATGGAGATATTTCTTTTTTTAAATTTTATAACTT
ATTTTGGTAAAACAAAGAGTCTAAAACAAATATTTGTACAATCCTCTTCT
AAAATTTGGCTTTGGCGTTTCAATGAAAGGGTAGTTTAAGGAGAAAAATA
TACAATGTACATGTATATAATATGTACTCTATATAACGCAGAGTCTTTTA
TCCTTATTTCTTTAAATTAAACAAATAAAAGCAGGCGTAGTACTCCAAAA
TATTATGCAATATAATTATTCAGATTTAATTATTTTTTTAAAGACATAAT
TTATAGCCTTATAGTCTAAAATGTATCTAAAATTCCCGTTTAGGAAATGT
AAGCTTATTATTTGATTGCTGTTGGAGACATTGATACAATTAATACACTA
ATCTAAGACCAACAAATGGTAGAGGTTCACTATTACATATGTATTGACCC
TCCCTAATGTATATTGTATAGTACCGAATGCTTATATTTATTTTTTTAGG
ATAAAGATGGTCATTCCATTTCTGGGGATGAAGTGTATGTTTTCCAAGAC
ACTTATCTTGAAATGATAGAATCTTCAAATTCAAAAATCTCGCTCCCTGA
AGTAAAAAACGATAGGGTATTAAAGTTTGATAAGCCCTTTCTTTTATTTG
TTGAGATCCGTGATGACTTAATTGCGTTTGGAAGGATTATGAATCCAAAT
GAGTGCAATAATTGTACGATAAAGAAGGAGAAAGAACAAGAAGAGTTCTA
TATTGTATAAAAAAGGGGCTTGAGGCCGGATTATTTATCAATTACTTGAT
ATATTTTGTATTTATTAAAATGGTTAAATGTAAAATATAAATATGTAGTT
TACCAATTGATATTTATCATAACTATAAAACTGATTTAATAATCATTAGT
TTGGTTATTAGCAGGCTAGGAGATTGAAAGCAAAAATGAACAGAGTTTAC
TATTTTGCATTTACTAAAGTGTCCTATTATCAGGGAATTAATACCATTTC
ATTAAATATTATATAAGTTTAAACTATCAAGTCTTACTCATGAAGAACAC
GACCCTCAACTTCGGAGGGCCCAGAACATAAATATTTATATTTTTAGAGA
AAACCTATTTTTAATTTTAATACAACCTATATTAAAATTAAGCAAAGTTT
GTCGGTCTCTCTGACTGTGGAGGTACATTTTGACAAATATGTGTAGCTCA
AACTCAGCATTTTATATTAAAAATGAATAGGAAGTATATATTCGCTGCGT
CAAAATGAACAAATTCTTGAATAAATATCAAGAAAAGGGAAAAAAAAATC
TCTATTTATTATTTT
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