EMLSAG00000000560, EMLSAG00000000560-683326 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953494|gb|GAXK01005059.1| (TSA: Calanus finmarchicus comp349077_c3_seq16 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 3.591e+0 Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 Query: 32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83 I+D+ SSN+ LH + LS P++ Q + N +N +I V IR +++++N Sbjct: 171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592887592|gb|GAXK01070783.1| (TSA: Calanus finmarchicus comp731386_c0_seq5 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 3.634e+0 Identity = 21/70 (30.00%), Postives = 33/70 (47.14%), Query Frame = 0 Query: 2 LKKKGCNVTPIPHSLTHSLMNGRGGKRHIGIVDSKSSNNPLHLFENALLSSIFPHSLQNMMNARNAQRIC 71 L +G + IP+S+ H ++GR S N P H+ +L I S++N+ RN+ RIC Sbjct: 143 LGSRGRGIRNIPNSIMHIGLSGR---------RSIIRNIPCHIMNISLSKRIVYSSMKNVRIHRNSIRIC 325
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953499|gb|GAXK01005054.1| (TSA: Calanus finmarchicus comp349077_c3_seq11 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 3.753e+0 Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 Query: 32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83 I+D+ SSN+ LH + LS P++ Q + N +N +I V IR +++++N Sbjct: 171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953503|gb|GAXK01005050.1| (TSA: Calanus finmarchicus comp349077_c3_seq7 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 3.869e+0 Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 Query: 32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83 I+D+ SSN+ LH + LS P++ Q + N +N +I V IR +++++N Sbjct: 171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953507|gb|GAXK01005046.1| (TSA: Calanus finmarchicus comp349077_c3_seq3 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 3.930e+0 Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 Query: 32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83 I+D+ SSN+ LH + LS P++ Q + N +N +I V IR +++++N Sbjct: 171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592756341|gb|GAXK01198072.1| (TSA: Calanus finmarchicus comp2905800_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 4.053e+0 Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 0 Query: 66 NAQRICSVMIRRKQTIVNNFLEFLGS 91 N RIC R+K I+NN EF GS Sbjct: 823 NNFRICKSSARKKNHIINNLCEFFGS 900
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592887591|gb|GAXK01070784.1| (TSA: Calanus finmarchicus comp731386_c0_seq6 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 4.101e+0 Identity = 21/70 (30.00%), Postives = 33/70 (47.14%), Query Frame = 0 Query: 2 LKKKGCNVTPIPHSLTHSLMNGRGGKRHIGIVDSKSSNNPLHLFENALLSSIFPHSLQNMMNARNAQRIC 71 L +G + IP+S+ H ++GR S N P H+ +L I S++N+ RN+ RIC Sbjct: 137 LGSRGRGIRNIPNSIMHIGLSGR---------RSIIRNIPCHIMNISLSKRIVYSSMKNVRIHRNSIRIC 319
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953487|gb|GAXK01005066.1| (TSA: Calanus finmarchicus comp349077_c3_seq23 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 4.348e+0 Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 Query: 32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83 I+D+ SSN+ LH + LS P++ Q + N +N +I V IR +++++N Sbjct: 171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Match: gi|592953489|gb|GAXK01005064.1| (TSA: Calanus finmarchicus comp349077_c3_seq21 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 4.501e+0 Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0 Query: 32 IVDSKSSNNPLHLFENALLSSIFPHS------LQNMMNARNAQRICSVMIRRKQTIVN 83 I+D+ SSN+ LH + LS P++ Q + N +N +I V IR +++++N Sbjct: 171 IIDTASSNSDLHFTKKTHLSKANPNNDPENLLEQGIQNKKNLSQIKPVRIRIRESMLN 344
BLAST of EMLSAG00000000560 vs. L. salmonis peptides
Match: EMLSAP00000000560 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1091:49636:51528:-1 gene:EMLSAG00000000560 transcript:EMLSAT00000000560 description:"snap_masked-LSalAtl2s1091-processed-gene-0.4") HSP 1 Score: 234.572 bits (597), Expect = 1.856e-80 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 Query: 1 MLKKKGCNVTPIPHSLTHSLMNGRGGKRHIGIVDSKSSNNPLHLFENALLSSIFPHSLQNMMNARNAQRICSVMIRRKQTIVNNFLEFLGSSTTPTTFRAIATQEEEFVVTLSS 114 MLKKKGCNVTPIPHSLTHSLMNGRGGKRHIGIVDSKSSNNPLHLFENALLSSIFPHSLQNMMNARNAQRICSVMIRRKQTIVNNFLEFLGSSTTPTTFRAIATQEEEFVVTLSS Sbjct: 1 MLKKKGCNVTPIPHSLTHSLMNGRGGKRHIGIVDSKSSNNPLHLFENALLSSIFPHSLQNMMNARNAQRICSVMIRRKQTIVNNFLEFLGSSTTPTTFRAIATQEEEFVVTLSS 114 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000560 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000560 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 19
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BLAST of EMLSAG00000000560 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000560 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000560 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000560 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000560 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1091:49636..51528- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000560-683326 ID=EMLSAG00000000560-683326|Name=EMLSAG00000000560|organism=Lepeophtheirus salmonis|type=gene|length=1893bp|location=Sequence derived from alignment at LSalAtl2s1091:49636..51528- (Lepeophtheirus salmonis)back to top Add to Basket
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