EMLSAG00000000628, EMLSAG00000000628-683394 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000628
Unique NameEMLSAG00000000628-683394
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000628 vs. C. finmarchicus
Match: gi|592917899|gb|GAXK01040476.1| (TSA: Calanus finmarchicus comp146106_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 78.1814 bits (191), Expect = 2.034e-15
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 0 
Query:  119 GLDSMNAFPYVRAGLIGQASDPLERGGNSCARMYRQCPTEPDRLLNYFNNHNGGIINHVQPSVDNEIGPI 188
            GL  M A+PYVRA +IG A+   ++ GN C ++Y QCP+  D+LL+YFNNHNGG+  +  PSV NE+G +
Sbjct:  832 GLAKMGAYPYVRAAIIGHANK--DQTGN-CEKLYLQCPSGTDQLLSYFNNHNGGLFQNALPSVTNEVGSL 1032
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BLAST of EMLSAG00000000628 vs. L. salmonis peptides
Match: EMLSAP00000000628 (pep:novel supercontig:LSalAtl2s:LSalAtl2s109:771638:773491:1 gene:EMLSAG00000000628 transcript:EMLSAT00000000628 description:"snap_masked-LSalAtl2s109-processed-gene-8.12")

HSP 1 Score: 576.63 bits (1485), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0 
Query:    1 MPKNDDGSVGGGALKPIRGGVPFGPQPFSGQFTPPPSFSSQGSFNNQFPPPNPNFQNGFPPSVAQQQFPQQFPPSGGGFNSQFAPHPNQFAPQGQFGRPPQGAGQPSLLNLFSNFIATGLDSMNAFPYVRAGLIGQASDPLERGGNSCARMYRQCPTEPDRLLNYFNNHNGGIINHVQPSVDNEIGPIVSAIISDLMQENDSNGSTGSGSGGLLSTAGSFLSSYLSGSSNTGGSSSSSNNGGLLSSASGLLSSFGGNGGSGSGGNSGVLASLLQSETGILNGAVDAITNYIHGPGPNGKK 300
            MPKNDDGSVGGGALKPIRGGVPFGPQPFSGQFTPPPSFSSQGSFNNQFPPPNPNFQNGFPPSVAQQQFPQQFPPSGGGFNSQFAPHPNQFAPQGQFGRPPQGAGQPSLLNLFSNFIATGLDSMNAFPYVRAGLIGQASDPLERGGNSCARMYRQCPTEPDRLLNYFNNHNGGIINHVQPSVDNEIGPIVSAIISDLMQENDSNGSTGSGSGGLLSTAGSFLSSYLSGSSNTGGSSSSSNNGGLLSSASGLLSSFGGNGGSGSGGNSGVLASLLQSETGILNGAVDAITNYIHGPGPNGKK
Sbjct:    1 MPKNDDGSVGGGALKPIRGGVPFGPQPFSGQFTPPPSFSSQGSFNNQFPPPNPNFQNGFPPSVAQQQFPQQFPPSGGGFNSQFAPHPNQFAPQGQFGRPPQGAGQPSLLNLFSNFIATGLDSMNAFPYVRAGLIGQASDPLERGGNSCARMYRQCPTEPDRLLNYFNNHNGGIINHVQPSVDNEIGPIVSAIISDLMQENDSNGSTGSGSGGLLSTAGSFLSSYLSGSSNTGGSSSSSNNGGLLSSASGLLSSFGGNGGSGSGGNSGVLASLLQSETGILNGAVDAITNYIHGPGPNGKK 300
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BLAST of EMLSAG00000000628 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold430_size173499-snap-gene-0.43 (protein:Tk06989 transcript:maker-scaffold430_size173499-snap-gene-0.43-mRNA-1 annotation:"vacuolar protein sorting")

HSP 1 Score: 54.299 bits (129), Expect = 5.588e-9
Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 0 
Query:  110 NLFSNFIATGLDSMNAFPYVRAGLIGQASD---------PLERGGNSCARMYR 153
            N+   F ATG+D MN FPYVRA LIG A+             R GNSCA+MYR
Sbjct:  172 NIIRLFQATGMDHMNMFPYVRAALIGHATRNDVKSAGGGSFNRRGNSCAQMYR 224
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000628 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000628 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592917899|gb|GAXK01040476.1|2.034e-1551.43TSA: Calanus finmarchicus comp146106_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000628 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000006280.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s109:77163... [more]
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BLAST of EMLSAG00000000628 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000628 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000628 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000628 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold430_size173499-snap-gene-0.435.588e-950.94protein:Tk06989 transcript:maker-scaffold430_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s109supercontigLSalAtl2s109:771638..773491 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s109-processed-gene-8.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000628 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000628EMLSAT00000000628-696475Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s109:771638..773491+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000628-683394 ID=EMLSAG00000000628-683394|Name=EMLSAG00000000628|organism=Lepeophtheirus salmonis|type=gene|length=1854bp|location=Sequence derived from alignment at LSalAtl2s109:771638..773491+ (Lepeophtheirus salmonis)
ATGCCAAAAAATGATGATGGTAGCGTAGGAGGTGGAGCTCTGAAACCCAT
TAGAGGTGGCGTACCATTTGGCCCTCAACCATTCAGTGGTCAATTTACAC
CTCCACCTTCTTTTTCTTCTCAAGGCAGCTTCAACAACCAATTCCCTCCA
CCAAATCCCAATTTTCAGAATGGATTTCCTCCTTCTGTTGCTCAGCAGCA
ATTTCCTCAACAGTTTCCACCTAGTGGAGGAGGATTTAATAGTCAATTCG
CACCACATCCAAATCAGTTTGCTCCTCAGGGTCAGTTTGGGAGGCCTCCT
CAAGGTGCTGGACAACCCTCTCTGTTGAACCTATTTTCAAATTTTATTGG
TAAGAAAAGACGGAGAAAGAGAGACACCAATTTGCAAGGAAACATAATTA
GGTAATTAATTATAATATTAGAAAATTAATTGTAATCTCTAATAAGGTGA
TCGATTATATTCTGATTTAAAAAAGGAGGACATATTGACGCTTATGATTT
TAAGGGGAAGTGGATGAATATTTTGAAATTAATAAATTTAAGAATCAAGT
ATTAATAGATGTTTCATAAATTTATAAATAGGTCCCGGACAGTCTGGTGA
AGATGTAATAAGATAACATGGGGGGGGGGGGGGTGGAGAGGATTGGTCCT
CCAACACGTAGTCCGATTAGTATTAGGTTAATAAAAGTCCCGCTACCATT
TTGATTGCCTATAAGTTATACCCAAACTTACTTATCTTTTCTTTGAACAA
AGTTATAGGCTATAACTTTGTTCAAAGAAAAGATAAGTAAGTTTGGGTTT
CATAAGAAGTTTATTTGATCTTTACATTTTTTTTTGTTATGATTGAAAAA
TCATATCGAAAATGGACAAAAAATCTTCAATTTCACCAGAGCCATATTTT
TAGCGTTACGAGACGTCCGTTTTCTTCCAGAAGAAGGTATGTTCGCTGTC
GCACCGTACTACCGAAAATACGCATGTGAACGATAAATTGTGGTTTTGTG
AGGCCCTGGACGGGGAGGATATCAAAATGCAGTGGGACTTTTGCACCCCC
CGTGACCTCTATTTTTGTTCGAGTTTTTACATTTTGTCCCACAAAAATCT
ATCATTTTATTTATTTTAAAAAAAAAGCCCCAGACGTCCTGTATAATATG
TAAAAAGAGGACATTTCCGGGTACAAGAGGATGATTCGTCACCCTATTTC
TCTGTAAAGTAAATAAATGCATGGAATTTAGTGAATAAATAATACTGTGG
CTCTACAACACTAACATAAACAAAATTCTAATTTTCCAGATTATTAAAAG
CCACTGGCCTTGATAGCATGAATGCATTCCCATATGTAAGAGCTGGTTTA
ATAGGCCAGGCATCTGACCCATTAGAACGTGGAGGTAACAGTTGTGCTCG
AATGTATCGACAATGCCCTACAGAACCAGATCGTCTCTTAAATTACTTTA
ATAACCATAATGGAGGAATCATAAATCACGTACAGCCAAGTGTAGATAAT
GAAATAGGTCCCATTGTGAGTGCTATTATTTCCGATCTAATGCAAGAAAA
CGATTCAAACGGGAGTACAGGGAGCGGCAGTGGGGGACTATTATCCACTG
CAGGTTCCTTTCTATCCTCATACTTGAGCGGCTCAAGCAATACTGGAGGG
AGTAGCTCTTCATCGAATAATGGTGGCTTGCTCTCAAGTGCGAGTGGACT
CTTGTCCTCCTTTGGTGGAAATGGTGGRTCTGGKAGTGGTGGTAACTCAG
GAGTACTTGCCTCATTACTTCAATCTGAAACTGGTATCTTAAATGGTGCT
GTCGATGCCATTACAAATTATATTCATGGACCTGGACCAAACGGGAAAAA
GTGA
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