EMLSAG00000000638, EMLSAG00000000638-683404 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000638
Unique NameEMLSAG00000000638-683404
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000638 vs. C. finmarchicus
Match: gi|592763604|gb|GAXK01190964.1| (TSA: Calanus finmarchicus comp335813_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 5.407e-1
Identity = 20/48 (41.67%), Postives = 23/48 (47.92%), Query Frame = 0 
Query:   32 TPYYPDQRPKVCRAHLFYGHAARSLS-------RPNNAPIDIPPDVHH 72
            TP  PD R KVC+A    GHAA + +       RPN  P    P  HH
Sbjct:  389 TPQCPDLRCKVCQAQ---GHAANTCTKAVKEQQRPNLQPHSFLPSTHH 523
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BLAST of EMLSAG00000000638 vs. C. finmarchicus
Match: gi|592757834|gb|GAXK01196579.1| (TSA: Calanus finmarchicus comp5349830_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.455e+0
Identity = 11/39 (28.21%), Postives = 20/39 (51.28%), Query Frame = 0 
Query:   57 SRPNNAPIDIPPDVHHRIBTGXXPSCTFKFRRLSPEKTR 95
            S+ N+  +   PD HH+ + G   SC  + + L+ +  R
Sbjct:   42 SKLNDCQVMETPDTHHQQNLGISASCYVQLQELADQAPR 158
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BLAST of EMLSAG00000000638 vs. C. finmarchicus
Match: gi|592762392|gb|GAXK01192021.1| (TSA: Calanus finmarchicus comp41789_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.503e+0
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 0 
Query:   34 YYPDQRPKVCRAHLFYGHAARSLSRP 59
            Y+PD RP +C     +GH++ S  RP
Sbjct: 2570 YWPDPRPDLCTRAASHGHSSGSAGRP 2647
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BLAST of EMLSAG00000000638 vs. C. finmarchicus
Match: gi|592762393|gb|GAXK01192020.1| (TSA: Calanus finmarchicus comp41789_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.503e+0
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 0 
Query:   34 YYPDQRPKVCRAHLFYGHAARSLSRP 59
            Y+PD RP +C     +GH++ S  RP
Sbjct: 2582 YWPDPRPDLCTRAASHGHSSGSAGRP 2659
[Close]
BLAST of EMLSAG00000000638 vs. L. salmonis peptides
Match: EMLSAP00000000638 (pep:novel supercontig:LSalAtl2s:LSalAtl2s10:1132105:1133921:-1 gene:EMLSAG00000000638 transcript:EMLSAT00000000638 description:"maker-LSalAtl2s10-augustus-gene-10.13")

HSP 1 Score: 192.2 bits (487), Expect = 2.258e-64
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 
Query:    1 MINIKSVNRVISHSSPTSDRDHNREFKSLTLTPYYPDQRPKVCRAHLFYGHAARSLSRPNNAPIDIPPDVHHRIBTGXXPSCTFKFRRLSPEKTRI 96
            MINIKSVNRVISHSSPTSDRDHNREFKSLTLTPYYPDQRPKVCRAHLFYGHAARSLSRPNNAPIDIPPDVHHRIBTGXXPSCTFKFRRLSPEKTRI
Sbjct:    1 MINIKSVNRVISHSSPTSDRDHNREFKSLTLTPYYPDQRPKVCRAHLFYGHAARSLSRPNNAPIDIPPDVHHRIBTGXXPSCTFKFRRLSPEKTRI 96
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000638 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000638 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592763604|gb|GAXK01190964.1|5.407e-141.67TSA: Calanus finmarchicus comp335813_c0_seq1 trans... [more]
gi|592757834|gb|GAXK01196579.1|1.455e+028.21TSA: Calanus finmarchicus comp5349830_c0_seq1 tran... [more]
gi|592762392|gb|GAXK01192021.1|3.503e+042.31TSA: Calanus finmarchicus comp41789_c2_seq2 transc... [more]
gi|592762393|gb|GAXK01192020.1|3.503e+042.31TSA: Calanus finmarchicus comp41789_c2_seq1 transc... [more]
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BLAST of EMLSAG00000000638 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000006382.258e-64100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s10:113210... [more]
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BLAST of EMLSAG00000000638 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000638 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000638 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000638 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s10supercontigLSalAtl2s10:1132105..1133921 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s10-augustus-gene-10.13
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000638 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000638EMLSAT00000000638-696485Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s10:1132105..1133921-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000638-683404 ID=EMLSAG00000000638-683404|Name=EMLSAG00000000638|organism=Lepeophtheirus salmonis|type=gene|length=1817bp|location=Sequence derived from alignment at LSalAtl2s10:1132105..1133921- (Lepeophtheirus salmonis)
ATGATTAATATTAAATCAGTTAACCGGGTGATTTCACACTCATCACCTAC
TTCAGATAGAGATCATAATCGAGAATTCAAATCTTTGACTCTGACTCCAT
ATTATCCAGATCAACGTCCTAAAGTATGTAGAGCACATCTCTTTTATGGA
CATGCTGCACGCTCTTGTAAGAAATGGTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTATGGACATGCTGCACGCTCTTGTAAGAAATG
GTGCATATTTCCAAAATCAAGATCGAATTTAAATATAGAGCCTTCATCAC
GCCCTTCTTCTCCTATTCGTTCGGAAAACAGGAAAGGCAAGTGAGTTTAG
CGGCGAACTCCTTGCCCTTTATCAAAGTCGCAGCTCAAATCAATAAYTTG
GTAAAGGTGGAAATTTTAATCGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCGCGGCTAATGGAAAAATAATTCAAGTATTTGGAGAGTTAACTTGTGTA
ATTGGAATTAAAACATTACGCAGGAATTATCCATGGACTTTTGTTGTAGC
TGATGTAACTAATCCTATAATAGGAATTGATTTTCTTCACCATTACGAAT
TTGTGATTGACTGCAAAAATGGAACTTTGTCCGACCCTAAAACTGGTAAC
TTAACTGCAGGTATTCTCTTATCAAAGAATGGCATATTTGCTATCAATCA
AACGTTTGAANNNNNTTCCTCCCGCTTGTCCGTACACCTCGTCTGTTCAG
TTCTCTCCTGAGTGCCAATAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATAGG
CAAGTAGTCAAAAACTAGTTAACTAGTCCTTGAGCTTTTAAAAAAAATAG
GACTTGCTAAGAATAATTTTCAACCTCCCTTCCATGTGATAAATGATAAT
CACAAATCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCATACTTGCTATCAATCAAACGTTTGAAACATCTGAGT
CTTGTATTAAAAATATTTTTATGAAATATCCTTATTTAACAGTATCTCGT
CCTAATAACGCCCCGATCGATATTCCTCCGGACGTACATCATCGGATARA
TACTGGAAGKTYTCCYTCMTGTACATTCAAATTTCGTCGTCTTTCTCCTG
AAAAGACAAGGATATGA
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