EMLSAG00000000644, EMLSAG00000000644-683410 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901915|gb|GAXK01056460.1| (TSA: Calanus finmarchicus comp304358_c0_seq2 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 9.875e-3 Identity = 56/243 (23.05%), Postives = 94/243 (38.68%), Query Frame = 0 Query: 44 HPQLFQTSDGRLFALRSPPSQK--NILSSND-------------KLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRES--TLQRAENLFTP-------FVVNDNA------FQGVNE-------GQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRY 249 H Q + G FALRSP S + +++ ND +L+QT DGR+ + ++ + R +T N Q+ D + P+ E ES L EN T V N+ A F N+ Q F++V + IPA Q +R + A +R + R+ + + +RV + + + Q + S TG+++ P AG + + Sbjct: 50 HSQATSPATGTSFALRSPSSVQTPSLVQHNDGRFFAVNANLQQGQLFQTADGRLFTLAPSSQAV----------QAVREVTAN-NQQLDLGSTPVNEAAVESVRVLTEDENQRTVLDTQGDRLVTNNQAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIPATQAVR-VAPVAQAVRVAPVAQAVRVAPV--AQAVRVAPVAQAVRVAPATQAVNRGVLDPSTSVYTGFYSNPGAGFGFNF 736
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901909|gb|GAXK01056466.1| (TSA: Calanus finmarchicus comp304358_c0_seq8 transcribed RNA sequence) HSP 1 Score: 38.5058 bits (88), Expect = 1.326e-2 Identity = 51/211 (24.17%), Postives = 84/211 (39.81%), Query Frame = 0 Query: 46 QLFQTSDGRLFALRSPPSQ-----KNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEE--DWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRY 249 QLFQT+DGRLF L +P SQ + + ++N +L D +NE +E R LT +E Q D D R T +A F + + Q F++V + IPA Q +R + A +R + R+ + + +RV + + + Q + S TG+++ P AG + + Sbjct: 50 QLFQTADGRLFTL-APSSQAVQAVREVTANNQQL----DLGSTPVNEAA------------VESVRVLTEDENQRTVLDTQGD------RLVTNNQAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIPATQAVR-VAPVAQAVRVAPVAQAVRVAPV--AQAVRVAPVAQAVRVAPATQAVNRGVLDPSTSVYTGFYSNPGAGFGFNF 604
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901916|gb|GAXK01056459.1| (TSA: Calanus finmarchicus comp304358_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 5.364e-2 Identity = 56/250 (22.40%), Postives = 94/250 (37.60%), Query Frame = 0 Query: 44 HPQLFQTSDGRLFALRSPPSQK--NILSSND-------------KLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRES--TLQRAENLFTP-------FVVNDNA------FQGVNE-------GQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQN-------QRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRY 249 H Q + G FALRSP S + +++ ND +L+QT DGR+ + ++ + R +T N Q+ D + P+ E ES L EN T V N+ A F N+ Q F++V + IPA Q +R + A +R + R+ + + +RV + + + Q + S TG+++ P AG + + Sbjct: 50 HSQATSPATGTSFALRSPSSVQTPSLVQHNDGRFFAVNANLQQGQLFQTADGRLFTLAPSSQAV----------QAVREVTAN-NQQLDLGSTPVNEAAVESVRVLTEDENQRTVLDTQGDRLVTNNQAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIPATQAVR-VAPVAQAVRVAPVAQAVRVAPVAQAVRVAPVAQAVRVAPVAQAVRVAPATQAVNRGVLDPSTSVYTGFYSNPGAGFGFNF 763
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901911|gb|GAXK01056464.1| (TSA: Calanus finmarchicus comp304358_c0_seq6 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 7.587e-2 Identity = 51/218 (23.39%), Postives = 84/218 (38.53%), Query Frame = 0 Query: 46 QLFQTSDGRLFALRSPPSQ-----KNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEE--DWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQN-------QRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRY 249 QLFQT+DGRLF L +P SQ + + ++N +L D +NE +E R LT +E Q D D R T +A F + + Q F++V + IPA Q +R + A +R + R+ + + +RV + + + Q + S TG+++ P AG + + Sbjct: 50 QLFQTADGRLFTL-APSSQAVQAVREVTANNQQL----DLGSTPVNEAA------------VESVRVLTEDENQRTVLDTQGD------RLVTNNQAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIPATQAVR-VAPVAQAVRVAPVAQAVRVAPVAQAVRVAPVAQAVRVAPVAQAVRVAPATQAVNRGVLDPSTSVYTGFYSNPGAGFGFNF 631
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901913|gb|GAXK01056462.1| (TSA: Calanus finmarchicus comp304358_c0_seq4 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 9.091e-2 Identity = 54/235 (22.98%), Postives = 89/235 (37.87%), Query Frame = 0 Query: 44 HPQLFQTSDGRLFALRSPPSQK--NILSSND-------------KLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRES--TLQRAENLFTPF------VVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRI------RNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRY 249 H Q + G FALRSP S + +++ ND +L+QT DGR+ + ++ + R +T N Q+ D + P+ E ES L EN T +V +N Q V + RF IP Q R + N + I R + R+ + + +RV + + + Q + S TG+++ P AG + + Sbjct: 50 HSQATSPATGTSFALRSPSSVQTPSLVQHNDGRFFAVNANLQQGQLFQTADGRLFTLAPSSQAV----------QAVREVTAN-NQQLDLGSTPVNEAAVESVRVLTEDENQRTVLDTQGDRLVTNN--QAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIPATQAVRVAPVAQAVRVAPV--AQAVRVAPVAQAVRVAPATQAVNRGVLDPSTSVYTGFYSNPGAGFGFNF 709
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901914|gb|GAXK01056461.1| (TSA: Calanus finmarchicus comp304358_c0_seq3 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 9.091e-2 Identity = 54/235 (22.98%), Postives = 89/235 (37.87%), Query Frame = 0 Query: 44 HPQLFQTSDGRLFALRSPPSQK--NILSSND-------------KLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRES--TLQRAENLFTPF------VVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRI------RNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRY 249 H Q + G FALRSP S + +++ ND +L+QT DGR+ + ++ + R +T N Q+ D + P+ E ES L EN T +V +N Q V + RF IP Q R + N + I R + R+ + + +RV + + + Q + S TG+++ P AG + + Sbjct: 50 HSQATSPATGTSFALRSPSSVQTPSLVQHNDGRFFAVNANLQQGQLFQTADGRLFTLAPSSQAV----------QAVREVTAN-NQQLDLGSTPVNEAAVESVRVLTEDENQRTVLDTQGDRLVTNN--QAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIPATQAVRVAPVAQAVRVAPV--AQAVRVAPVAQAVRVAPATQAVNRGVLDPSTSVYTGFYSNPGAGFGFNF 709
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901910|gb|GAXK01056465.1| (TSA: Calanus finmarchicus comp304358_c0_seq7 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 9.895e-2 Identity = 53/229 (23.14%), Postives = 85/229 (37.12%), Query Frame = 0 Query: 44 HPQLFQTSDGRLFALRSPPSQK--NILSSND-------------KLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRES--TLQRAENLFTPF------VVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRY 249 H Q + G FALRSP S + +++ ND +L+QT DGR+ + ++ + R +T N Q+ D + P+ E ES L EN T +V +N Q V + RF IP Q R + N + SI + +RV + + + Q + S TG+++ P AG + + Sbjct: 50 HSQATSPATGTSFALRSPSSVQTPSLVQHNDGRFFAVNANLQQGQLFQTADGRLFTLAPSSQAV----------QAVREVTAN-NQQLDLGSTPVNEAAVESVRVLTEDENQRTVLDTQGDRLVTNN--QAVPQAVRFATANQVLNSIPPAQTFRVVSSNQN--------------SIPATQAVRVAPVAQAVRVAPATQAVNRGVLDPSTSVYTGFYSNPGAGFGFNF 655
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901912|gb|GAXK01056463.1| (TSA: Calanus finmarchicus comp304358_c0_seq5 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.317e-1 Identity = 53/229 (23.14%), Postives = 87/229 (37.99%), Query Frame = 0 Query: 44 HPQLFQTSDGRLFALRSPPSQK--NILSSND-------------KLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRES--TLQRAENLFTPF------VVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRY 249 H Q + G FALRSP S + +++ ND +L+QT DGR+ + ++ + R +T N Q+ D + P+ E ES L EN T +V +N Q V + RF IP Q R + N + I R+ + + +RV + + + Q + S TG+++ P AG + + Sbjct: 50 HSQATSPATGTSFALRSPSSVQTPSLVQHNDGRFFAVNANLQQGQLFQTADGRLFTLAPSSQAV----------QAVREVTAN-NQQLDLGSTPVNEAAVESVRVLTEDENQRTVLDTQGDRLVTNN--QAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIP---ATQAVRVAPV--AQAVRVAPVAQAVRVAPATQAVNRGVLDPSTSVYTGFYSNPGAGFGFNF 682
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901908|gb|GAXK01056467.1| (TSA: Calanus finmarchicus comp304358_c0_seq9 transcribed RNA sequence) HSP 1 Score: 34.6538 bits (78), Expect = 2.025e-1 Identity = 53/211 (25.12%), Postives = 86/211 (40.76%), Query Frame = 0 Query: 46 QLFQTSDGRLFALRSPPSQ-----KNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEE--DWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRY 249 QLFQT+DGRLF L +P SQ + + ++N +L D +NE +E R LT +E Q D D R T +A F + + Q F++V + IPA Q +R + A +R + R+ + + +RV + NR + P+ S+ TG+++ P AG + + Sbjct: 50 QLFQTADGRLFTL-APSSQAVQAVREVTANNQQL----DLGSTPVNEAA------------VESVRVLTEDENQRTVLDTQGD------RLVTNNQAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIPATQAVR-VAPVAQAVRVAPVAQAVRVAPV--AQAVRV---APATQAVNRG--VLDPSTSVY----TGFYSNPGAGFGFNF 577
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592848796|gb|GAXK01108748.1| (TSA: Calanus finmarchicus comp296836_c3_seq15 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.579e-1 Identity = 21/59 (35.59%), Postives = 28/59 (47.46%), Query Frame = 0 Query: 45 PQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRI---NEGGSSILANEDWNS 100 P L Q +DGRLFA+ N +L+QT DGRI + G S+ + D S Sbjct: 180 PSLVQHADGRLFAV-------NADLQPGQLFQTADGRIFTLAAQAPSGPSMTSTPDLPS 335
BLAST of EMLSAG00000000644 vs. L. salmonis peptides
Match: EMLSAP00000000644 (pep:novel supercontig:LSalAtl2s:LSalAtl2s10:861298:862239:1 gene:EMLSAG00000000644 transcript:EMLSAT00000000644 description:"snap_masked-LSalAtl2s10-processed-gene-8.2") HSP 1 Score: 500.745 bits (1288), Expect = 0.000e+0 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0 Query: 1 MKIVYSIVLLVSITPYVSSISSARRFEKVQNVFTSSRINPVDVHPQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRYK 250 MKIVYSIVLLVSITPYVSSISSARRFEKVQNVFTSSRINPVDVHPQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRYK Sbjct: 1 MKIVYSIVLLVSITPYVSSISSARRFEKVQNVFTSSRINPVDVHPQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRYK 250 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000644 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 21
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BLAST of EMLSAG00000000644 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000644 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000644 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000644 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000644 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s10:861298..862239+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000644-683410 ID=EMLSAG00000000644-683410|Name=EMLSAG00000000644|organism=Lepeophtheirus salmonis|type=gene|length=942bp|location=Sequence derived from alignment at LSalAtl2s10:861298..862239+ (Lepeophtheirus salmonis)back to top Add to Basket
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