EMLSAG00000000644, EMLSAG00000000644-683410 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000644
Unique NameEMLSAG00000000644-683410
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901905|gb|GAXK01056470.1| (TSA: Calanus finmarchicus comp304358_c0_seq12 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.756e-1
Identity = 53/211 (25.12%), Postives = 86/211 (40.76%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQ-----KNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEE--DWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRY 249
            QLFQT+DGRLF L +P SQ     + + ++N +L    D     +NE              +E  R LT +E Q    D   D      R  T  +A      F   +     +   Q F++V +    IPA Q +R +   A  +R   +    R+  +   + +RV     +    NR   +  P+ S+     TG+++ P AG  + +
Sbjct:   50 QLFQTADGRLFTL-APSSQAVQAVREVTANNQQL----DLGSTPVNEAA------------VESVRVLTEDENQRTVLDTQGD------RLVTNNQAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIPATQAVR-VAPVAQAVRVAPVAQAVRVAPV--AQAVRV---APATQAVNRG--VLDPSTSVY----TGFYSNPGAGFGFNF 577
[Close]
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901907|gb|GAXK01056468.1| (TSA: Calanus finmarchicus comp304358_c0_seq10 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 3.734e-1
Identity = 39/137 (28.47%), Postives = 56/137 (40.88%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQ-----KNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEE--DWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLR 175
            QLFQT+DGRLF L +P SQ     + + ++N +L    D     +NE              +E  R LT +E Q    D   D      R  T  +A      F   +     +   Q F++V +    IPA Q +R
Sbjct:  209 QLFQTADGRLFTL-APSSQAVQAVREVTANNQQL----DLGSTPVNEAA------------VESVRVLTEDENQRTVLDTQGD------RLVTNNQAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIPATQAVR 550
[Close]
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592901906|gb|GAXK01056469.1| (TSA: Calanus finmarchicus comp304358_c0_seq11 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 4.231e-1
Identity = 39/137 (28.47%), Postives = 56/137 (40.88%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQ-----KNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEE--DWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLR 175
            QLFQT+DGRLF L +P SQ     + + ++N +L    D     +NE              +E  R LT +E Q    D   D      R  T  +A      F   +     +   Q F++V +    IPA Q +R
Sbjct:  182 QLFQTADGRLFTL-APSSQAVQAVREVTANNQQL----DLGSTPVNEAA------------VESVRVLTEDENQRTVLDTQGD------RLVTNNQAVPQAVRFATANQVLNSIPPAQTFRVVSSNQNSIPATQAVR 523
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BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592848805|gb|GAXK01108739.1| (TSA: Calanus finmarchicus comp296836_c3_seq6 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.110e+0
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   45 PQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRI 85
            P L Q +DGRLFA+ +     N+     +L+QT DGRI  +
Sbjct:  429 PSLVQHADGRLFAVNA-----NL--QPGQLFQTADGRIFTL 530

HSP 2 Score: 31.187 bits (69), Expect = 3.397e+0
Identity = 23/79 (29.11%), Postives = 36/79 (45.57%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANE-DWNSDLEVTRGLTLNEEQEEDWTNDPI 123
            QLFQT+DGR+F L + P    +L+S   L  +    +   N    ++L +  D + D E T    +     E  T  P+
Sbjct:  234 QLFQTADGRIFTLAAQPP-LGLLTSTSDLPSSSVASLSESNPDNDNVLIDARDSSEDEEATETPAVETTTLEPVTEAPV 467
[Close]
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592848804|gb|GAXK01108740.1| (TSA: Calanus finmarchicus comp296836_c3_seq7 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.148e+0
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   45 PQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRI 85
            P L Q +DGRLFA+ +     N+     +L+QT DGRI  +
Sbjct:  415 PSLVQHADGRLFAVNA-----NL--QPGQLFQTADGRIFTL 516

HSP 2 Score: 31.187 bits (69), Expect = 3.190e+0
Identity = 23/79 (29.11%), Postives = 36/79 (45.57%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANE-DWNSDLEVTRGLTLNEEQEEDWTNDPI 123
            QLFQT+DGR+F L + P    +L+S   L  +    +   N    ++L +  D + D E T    +     E  T  P+
Sbjct:  220 QLFQTADGRIFTLAAQPP-LGLLTSTSDLPSSSVASLSESNPDNDNVLIDARDSSEDEEATETPAVETTTLEPVTEAPV 453
[Close]
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592848806|gb|GAXK01108738.1| (TSA: Calanus finmarchicus comp296836_c3_seq5 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.525e+0
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   45 PQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRI 85
            P L Q +DGRLFA+ +     N+     +L+QT DGRI  +
Sbjct:  446 PSLVQHADGRLFAVNA-----NL--QPGQLFQTADGRIFTL 547

HSP 2 Score: 31.187 bits (69), Expect = 2.738e+0
Identity = 23/79 (29.11%), Postives = 36/79 (45.57%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANE-DWNSDLEVTRGLTLNEEQEEDWTNDPI 123
            QLFQT+DGR+F L + P    +L+S   L  +    +   N    ++L +  D + D E T    +     E  T  P+
Sbjct:  251 QLFQTADGRIFTLAAQPP-LGLLTSTSDLPSSSVASLSESNPDNDNVLIDARDSSEDEEATETPAVETTTLEPVTEAPV 484
[Close]
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592848809|gb|GAXK01108735.1| (TSA: Calanus finmarchicus comp296836_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.626e+0
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   45 PQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRI 85
            P L Q +DGRLFA+ +     N+     +L+QT DGRI  +
Sbjct:  541 PSLVQHADGRLFAVNA-----NL--QPGQLFQTADGRIFTL 642

HSP 2 Score: 31.187 bits (69), Expect = 3.592e+0
Identity = 23/79 (29.11%), Postives = 36/79 (45.57%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANE-DWNSDLEVTRGLTLNEEQEEDWTNDPI 123
            QLFQT+DGR+F L + P    +L+S   L  +    +   N    ++L +  D + D E T    +     E  T  P+
Sbjct:  346 QLFQTADGRIFTLAAQPP-LGLLTSTSDLPSSSVASLSESNPDNDNVLIDARDSSEDEEATETPAVETTTLEPVTEAPV 579
[Close]
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592848802|gb|GAXK01108742.1| (TSA: Calanus finmarchicus comp296836_c3_seq9 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.975e+0
Identity = 17/41 (41.46%), Postives = 22/41 (53.66%), Query Frame = 0 
Query:   45 PQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRI 85
            P L Q +DGRLFA+       N      +L+QT DGRI  +
Sbjct:  429 PSLVQHADGRLFAV-------NANLQPGQLFQTADGRIFTL 530

HSP 2 Score: 30.0314 bits (66), Expect = 6.398e+0
Identity = 23/79 (29.11%), Postives = 36/79 (45.57%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANE-DWNSDLEVTRGLTLNEEQEEDWTNDPI 123
            QLFQT+DGR+F L + P    +L+S   L  +    +   N    ++L +  D + D E T    +     E  T  P+
Sbjct:  234 QLFQTADGRIFTLAAQPP-LGLLTSTSDLPSSSVASLSESNPDNDNVLIDARDSSEDEEATETPAVETTTLEPVTEAPV 467
[Close]
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592848801|gb|GAXK01108743.1| (TSA: Calanus finmarchicus comp296836_c3_seq10 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.134e+0
Identity = 17/41 (41.46%), Postives = 22/41 (53.66%), Query Frame = 0 
Query:   45 PQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRI 85
            P L Q +DGRLFA+       N      +L+QT DGRI  +
Sbjct:  415 PSLVQHADGRLFAV-------NANLQPGQLFQTADGRIFTL 516

HSP 2 Score: 30.0314 bits (66), Expect = 6.332e+0
Identity = 23/79 (29.11%), Postives = 36/79 (45.57%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANE-DWNSDLEVTRGLTLNEEQEEDWTNDPI 123
            QLFQT+DGR+F L + P    +L+S   L  +    +   N    ++L +  D + D E T    +     E  T  P+
Sbjct:  220 QLFQTADGRIFTLAAQPP-LGLLTSTSDLPSSSVASLSESNPDNDNVLIDARDSSEDEEATETPAVETTTLEPVTEAPV 453
[Close]
BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592848803|gb|GAXK01108741.1| (TSA: Calanus finmarchicus comp296836_c3_seq8 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.387e+0
Identity = 17/41 (41.46%), Postives = 22/41 (53.66%), Query Frame = 0 
Query:   45 PQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRI 85
            P L Q +DGRLFA+       N      +L+QT DGRI  +
Sbjct:  446 PSLVQHADGRLFAV-------NANLQPGQLFQTADGRIFTL 547

HSP 2 Score: 30.4166 bits (67), Expect = 5.217e+0
Identity = 23/79 (29.11%), Postives = 36/79 (45.57%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANE-DWNSDLEVTRGLTLNEEQEEDWTNDPI 123
            QLFQT+DGR+F L + P    +L+S   L  +    +   N    ++L +  D + D E T    +     E  T  P+
Sbjct:  251 QLFQTADGRIFTLAAQPP-LGLLTSTSDLPSSSVASLSESNPDNDNVLIDARDSSEDEEATETPAVETTTLEPVTEAPV 484
[Close]
BLAST of EMLSAG00000000644 vs. L. salmonis peptides
Match: EMLSAP00000000644 (pep:novel supercontig:LSalAtl2s:LSalAtl2s10:861298:862239:1 gene:EMLSAG00000000644 transcript:EMLSAT00000000644 description:"snap_masked-LSalAtl2s10-processed-gene-8.2")

HSP 1 Score: 500.745 bits (1288), Expect = 0.000e+0
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0 
Query:    1 MKIVYSIVLLVSITPYVSSISSARRFEKVQNVFTSSRINPVDVHPQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRYK 250
            MKIVYSIVLLVSITPYVSSISSARRFEKVQNVFTSSRINPVDVHPQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRYK
Sbjct:    1 MKIVYSIVLLVSITPYVSSISSARRFEKVQNVFTSSRINPVDVHPQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRYK 250
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000644 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000644 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 21
Match NameE-valueIdentityDescription
gi|592901905|gb|GAXK01056470.1|2.756e-125.12TSA: Calanus finmarchicus comp304358_c0_seq12 tran... [more]
gi|592901907|gb|GAXK01056468.1|3.734e-128.47TSA: Calanus finmarchicus comp304358_c0_seq10 tran... [more]
gi|592901906|gb|GAXK01056469.1|4.231e-128.47TSA: Calanus finmarchicus comp304358_c0_seq11 tran... [more]
gi|592848805|gb|GAXK01108739.1|2.110e+041.46TSA: Calanus finmarchicus comp296836_c3_seq6 trans... [more]
gi|592848804|gb|GAXK01108740.1|2.148e+041.46TSA: Calanus finmarchicus comp296836_c3_seq7 trans... [more]
gi|592848806|gb|GAXK01108738.1|2.525e+041.46TSA: Calanus finmarchicus comp296836_c3_seq5 trans... [more]
gi|592848809|gb|GAXK01108735.1|2.626e+041.46TSA: Calanus finmarchicus comp296836_c3_seq2 trans... [more]
gi|592848802|gb|GAXK01108742.1|2.975e+041.46TSA: Calanus finmarchicus comp296836_c3_seq9 trans... [more]
gi|592848801|gb|GAXK01108743.1|3.134e+041.46TSA: Calanus finmarchicus comp296836_c3_seq10 tran... [more]
gi|592848803|gb|GAXK01108741.1|3.387e+041.46TSA: Calanus finmarchicus comp296836_c3_seq8 trans... [more]

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BLAST of EMLSAG00000000644 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000006440.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s10:861298... [more]
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BLAST of EMLSAG00000000644 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000644 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000644 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000644 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s10supercontigLSalAtl2s10:861298..862239 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s10-processed-gene-8.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000644 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000644EMLSAT00000000644-696491Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s10:861298..862239+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000644-683410 ID=EMLSAG00000000644-683410|Name=EMLSAG00000000644|organism=Lepeophtheirus salmonis|type=gene|length=942bp|location=Sequence derived from alignment at LSalAtl2s10:861298..862239+ (Lepeophtheirus salmonis)
CTGTATCATTTGAACAACAAATCCATCAAAGAAACAACTCCCATAAATAT
GAAGGTATATATTGGTCCTTTATTCAATCTCCTTCGCCTTCATTACCAGT
CCCTTTGTTTCATTTCAGATAGTATATTCAATTGTATTACTTGTGAGTAT
CACCCCTTACGTTTCCTCAATCTCTTCTGCACGACGCTTTGAGAAAGTCC
AAAATGTATTTACTTCATCAAGAATCAATCCTGTTGATGTTCATCCCCAG
CTATTTCAAACATCGGATGGACGCCTTTTTGCACTTCGATCACCACCATC
TCAAAAGAATATTCTATCATCAAATGATAAACTCTATCAAACTCAGGATG
GAAGGATTATCCGAATAAATGAAGGAGGTTCCAGTATTTTGGCAAATGAG
GATTGGAATTCTGATTTGGAAGTAACTCGAGGTCTCACTCTAAATGAAGA
ACAAGAAGAGGACTGGACAAACGATCCCATTGAAGAAGACTTGAGAGAGT
CAACGCTACAGAGAGCAGAGAACTTGTTCACTCCATTCGTTGTGAATGAT
AATGCTTTTCAAGGTGTCAATGAGGGTCAAAGATTTAAGATTGTGAGAAA
TGAAAACTTTAGAATCCCGGCTAGACAAGGATTGAGAGKCATTGATGATA
ATGCGTCCAGGATTAGAAATGACAATTTAAAGGATAACTCTAGGCTACTA
TCTATTCAAAACCAGAGGCCCCTCCGTGTTCGATTACTTGGAAATTCGAA
TGGTGGGAGTAACAGACAGCAAGTTATTCGTTCTCCAAACTATTCCCTCT
CAGAGGACACTGCCACAGGCTACTTTGCCTTCCCATCTGCCGGAATATCC
TATAGATATAAATAAATATATTTGTAAAAATAATATGAAAAATATATGTT
ATTCACTAATCTTAATAGATGAAAATACAAAATATATCATAA
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