EMLSAG00000000644, EMLSAG00000000644-683410 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000644
Unique NameEMLSAG00000000644-683410
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000644 vs. C. finmarchicus
Match: gi|592848807|gb|GAXK01108737.1| (TSA: Calanus finmarchicus comp296836_c3_seq4 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.513e+0
Identity = 17/41 (41.46%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   45 PQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRI 85
            P L Q +DGRLFA+ +     N+     +L+QT DGRI  +
Sbjct:  541 PSLVQHADGRLFAVNA-----NL--QPGQLFQTADGRIFTL 642

HSP 2 Score: 30.4166 bits (67), Expect = 6.235e+0
Identity = 23/79 (29.11%), Postives = 36/79 (45.57%), Query Frame = 0 
Query:   46 QLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANE-DWNSDLEVTRGLTLNEEQEEDWTNDPI 123
            QLFQT+DGR+F L + P    +L+S   L  +    +   N    ++L +  D + D E T    +     E  T  P+
Sbjct:  346 QLFQTADGRIFTLAAQPP-LGLLTSTSDLPSSSVASLSESNPDNDNVLIDARDSSEDEEATETPAVETTTLEPVTEAPV 579
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BLAST of EMLSAG00000000644 vs. L. salmonis peptides
Match: EMLSAP00000000644 (pep:novel supercontig:LSalAtl2s:LSalAtl2s10:861298:862239:1 gene:EMLSAG00000000644 transcript:EMLSAT00000000644 description:"snap_masked-LSalAtl2s10-processed-gene-8.2")

HSP 1 Score: 500.745 bits (1288), Expect = 0.000e+0
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0 
Query:    1 MKIVYSIVLLVSITPYVSSISSARRFEKVQNVFTSSRINPVDVHPQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRYK 250
            MKIVYSIVLLVSITPYVSSISSARRFEKVQNVFTSSRINPVDVHPQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRYK
Sbjct:    1 MKIVYSIVLLVSITPYVSSISSARRFEKVQNVFTSSRINPVDVHPQLFQTSDGRLFALRSPPSQKNILSSNDKLYQTQDGRIIRINEGGSSILANEDWNSDLEVTRGLTLNEEQEEDWTNDPIEEDLRESTLQRAENLFTPFVVNDNAFQGVNEGQRFKIVRNENFRIPARQGLRXIDDNASRIRNDNLKDNSRLLSIQNQRPLRVRLLGNSNGGSNRQQVIRSPNYSLSEDTATGYFAFPSAGISYRYK 250
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000644 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000644 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 21
Match NameE-valueIdentityDescription
gi|592848807|gb|GAXK01108737.1|3.513e+041.46TSA: Calanus finmarchicus comp296836_c3_seq4 trans... [more]

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BLAST of EMLSAG00000000644 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000006440.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s10:861298... [more]
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BLAST of EMLSAG00000000644 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000644 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000644 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000644 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s10supercontigLSalAtl2s10:861298..862239 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s10-processed-gene-8.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000644 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000644EMLSAT00000000644-696491Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s10:861298..862239+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000644-683410 ID=EMLSAG00000000644-683410|Name=EMLSAG00000000644|organism=Lepeophtheirus salmonis|type=gene|length=942bp|location=Sequence derived from alignment at LSalAtl2s10:861298..862239+ (Lepeophtheirus salmonis)
CTGTATCATTTGAACAACAAATCCATCAAAGAAACAACTCCCATAAATAT
GAAGGTATATATTGGTCCTTTATTCAATCTCCTTCGCCTTCATTACCAGT
CCCTTTGTTTCATTTCAGATAGTATATTCAATTGTATTACTTGTGAGTAT
CACCCCTTACGTTTCCTCAATCTCTTCTGCACGACGCTTTGAGAAAGTCC
AAAATGTATTTACTTCATCAAGAATCAATCCTGTTGATGTTCATCCCCAG
CTATTTCAAACATCGGATGGACGCCTTTTTGCACTTCGATCACCACCATC
TCAAAAGAATATTCTATCATCAAATGATAAACTCTATCAAACTCAGGATG
GAAGGATTATCCGAATAAATGAAGGAGGTTCCAGTATTTTGGCAAATGAG
GATTGGAATTCTGATTTGGAAGTAACTCGAGGTCTCACTCTAAATGAAGA
ACAAGAAGAGGACTGGACAAACGATCCCATTGAAGAAGACTTGAGAGAGT
CAACGCTACAGAGAGCAGAGAACTTGTTCACTCCATTCGTTGTGAATGAT
AATGCTTTTCAAGGTGTCAATGAGGGTCAAAGATTTAAGATTGTGAGAAA
TGAAAACTTTAGAATCCCGGCTAGACAAGGATTGAGAGKCATTGATGATA
ATGCGTCCAGGATTAGAAATGACAATTTAAAGGATAACTCTAGGCTACTA
TCTATTCAAAACCAGAGGCCCCTCCGTGTTCGATTACTTGGAAATTCGAA
TGGTGGGAGTAACAGACAGCAAGTTATTCGTTCTCCAAACTATTCCCTCT
CAGAGGACACTGCCACAGGCTACTTTGCCTTCCCATCTGCCGGAATATCC
TATAGATATAAATAAATATATTTGTAAAAATAATATGAAAAATATATGTT
ATTCACTAATCTTAATAGATGAAAATACAAAATATATCATAA
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