EMLSAG00000000645, EMLSAG00000000645-683411 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000645 vs. C. finmarchicus
Match: gi|592858513|gb|GAXK01099049.1| (TSA: Calanus finmarchicus comp238160_c1_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.214e+0 Identity = 11/46 (23.91%), Postives = 23/46 (50.00%), Query Frame = 0 Query: 158 INPREKSLRTFGNCCWKLFASSKRSNRNHKIVAGNAEXKNPSEWKG 203 +N + S+ G+CC+ L+ S + ++++ G + K W G Sbjct: 338 VNFKPSSIELLGSCCYYLYQHSTKQAGKYQLLTGEGQVKPGLAWVG 475
BLAST of EMLSAG00000000645 vs. C. finmarchicus
Match: gi|592916419|gb|GAXK01041956.1| (TSA: Calanus finmarchicus comp754338_c0_seq2 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 6.139e+0 Identity = 15/43 (34.88%), Postives = 24/43 (55.81%), Query Frame = 0 Query: 42 HRDINGEIEGLCEKLLDISAKNNLQTIFKHPNFIGILQECKSY 84 H D++G + D+S+ N++T+ H N IG L+ C SY Sbjct: 4585 HLDLSGNA---ISYITDLSSLKNVKTLMLHKNKIGTLRSCSSY 4704
BLAST of EMLSAG00000000645 vs. C. finmarchicus
Match: gi|592916420|gb|GAXK01041955.1| (TSA: Calanus finmarchicus comp754338_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 6.140e+0 Identity = 15/43 (34.88%), Postives = 24/43 (55.81%), Query Frame = 0 Query: 42 HRDINGEIEGLCEKLLDISAKNNLQTIFKHPNFIGILQECKSY 84 H D++G + D+S+ N++T+ H N IG L+ C SY Sbjct: 4606 HLDLSGNA---ISYITDLSSLKNVKTLMLHKNKIGTLRSCSSY 4725
BLAST of EMLSAG00000000645 vs. C. finmarchicus
Match: gi|592893878|gb|GAXK01064497.1| (TSA: Calanus finmarchicus comp585311_c0_seq2 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 6.659e+0 Identity = 19/50 (38.00%), Postives = 24/50 (48.00%), Query Frame = 0 Query: 3 LNYKLEVSVYLVLCTLIGA---TKGEEVVKEASLDDGLHRRVHRDINGEI 49 L YKLE S +L C L+G T G EV A + R+ NGE+ Sbjct: 1156 LLYKLEFSTFLSHCRLVGGPKETSGCEVENPADFSCDVFRQAECSYNGEL 1305
BLAST of EMLSAG00000000645 vs. C. finmarchicus
Match: gi|592893879|gb|GAXK01064496.1| (TSA: Calanus finmarchicus comp585311_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 6.661e+0 Identity = 19/50 (38.00%), Postives = 24/50 (48.00%), Query Frame = 0 Query: 3 LNYKLEVSVYLVLCTLIGA---TKGEEVVKEASLDDGLHRRVHRDINGEI 49 L YKLE S +L C L+G T G EV A + R+ NGE+ Sbjct: 1159 LLYKLEFSTFLSHCRLVGGPKETSGCEVENPADFSCDVFRQAECSYNGEL 1308
BLAST of EMLSAG00000000645 vs. C. finmarchicus
Match: gi|592893876|gb|GAXK01064499.1| (TSA: Calanus finmarchicus comp585311_c0_seq4 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 8.610e+0 Identity = 19/50 (38.00%), Postives = 24/50 (48.00%), Query Frame = 0 Query: 3 LNYKLEVSVYLVLCTLIGA---TKGEEVVKEASLDDGLHRRVHRDINGEI 49 L YKLE S +L C L+G T G EV A + R+ NGE+ Sbjct: 1144 LLYKLEFSTFLSHCRLVGGPKETSGCEVENPADFSCDVFRQAECSYNGEL 1293
BLAST of EMLSAG00000000645 vs. C. finmarchicus
Match: gi|592893877|gb|GAXK01064498.1| (TSA: Calanus finmarchicus comp585311_c0_seq3 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 8.613e+0 Identity = 19/50 (38.00%), Postives = 24/50 (48.00%), Query Frame = 0 Query: 3 LNYKLEVSVYLVLCTLIGA---TKGEEVVKEASLDDGLHRRVHRDINGEI 49 L YKLE S +L C L+G T G EV A + R+ NGE+ Sbjct: 1147 LLYKLEFSTFLSHCRLVGGPKETSGCEVENPADFSCDVFRQAECSYNGEL 1296
BLAST of EMLSAG00000000645 vs. L. salmonis peptides
Match: EMLSAP00000000645 (pep:novel supercontig:LSalAtl2s:LSalAtl2s10:863142:870599:1 gene:EMLSAG00000000645 transcript:EMLSAT00000000645 description:"maker-LSalAtl2s10-snap-gene-9.27") HSP 1 Score: 446.432 bits (1147), Expect = 9.077e-161 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 Query: 1 MQLNYKLEVSVYLVLCTLIGATKGEEVVKEASLDDGLHRRVHRDINGEIEGLCEKLLDISAKNNLQTIFKHPNFIGILQECKSYYQNWMFKRGSLLKAKGFGLRTKFLPSRRGGSGLRTARRLNLSHKDEENHCEILLYPKTNFQGTPKRFFASKRFINPREKSLRTFGNCCWKLFASSKRSNRNHKIVAGNAEXKNPSEWKGIPSSTKRITRVDNC 217 MQLNYKLEVSVYLVLCTLIGATKGEEVVKEASLDDGLHRRVHRDINGEIEGLCEKLLDISAKNNLQTIFKHPNFIGILQECKSYYQNWMFKRGSLLKAKGFGLRTKFLPSRRGGSGLRTARRLNLSHKDEENHCEILLYPKTNFQGTPKRFFASKRFINPREKSLRTFGNCCWKLFASSKRSNRNHKIVAGNAEXKNPSEWKGIPSSTKRITRVDNC Sbjct: 1 MQLNYKLEVSVYLVLCTLIGATKGEEVVKEASLDDGLHRRVHRDINGEIEGLCEKLLDISAKNNLQTIFKHPNFIGILQECKSYYQNWMFKRGSLLKAKGFGLRTKFLPSRRGGSGLRTARRLNLSHKDEENHCEILLYPKTNFQGTPKRFFASKRFINPREKSLRTFGNCCWKLFASSKRSNRNHKIVAGNAEXKNPSEWKGIPSSTKRITRVDNC 217
BLAST of EMLSAG00000000645 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold846_size89341-snap-gene-0.10 (protein:Tk05677 transcript:maker-scaffold846_size89341-snap-gene-0.10-mRNA-1 annotation:"peptidase u61 ld-carboxypeptidase a") HSP 1 Score: 61.6178 bits (148), Expect = 2.786e-12 Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 0 Query: 111 RRGGSGLRTARRLNLSHKDEENH----CEILLYPKTNFQGTPKRFFASKRFINPREKSLRTFGNCCWKLFA 177 R +GL + R N + +E+ C+I+ Y +++F G S+RFI REKSLRTFGNCCW LF+ Sbjct: 87 RASSTGLLSGHRKNYRRQIQEDQFDTECKIVFYTRSDFGGQHSTLRGSRRFIQEREKSLRTFGNCCWALFS 157
BLAST of EMLSAG00000000645 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold434_size172279-processed-gene-0.15 (protein:Tk10101 transcript:snap_masked-scaffold434_size172279-processed-gene-0.15-mRNA-1 annotation:"---NA---") HSP 1 Score: 56.225 bits (134), Expect = 3.615e-10 Identity = 43/154 (27.92%), Postives = 74/154 (48.05%), Query Frame = 0 Query: 50 EGLCEKLLDISAKNNLQTIFKHPNFIGILQECKSYYQNWMFKRGSLLKAKGFGLRTKFLPSRRGGSGLRTARRLNLSHKDEENHCEILLYPKTNFQGTPKRFFAS-KRFINPREKSLRTFGNCCWKLFASSKRSNRN-HKIVAGNAEXKNPSEW 201 E +C+K LD A +++ + G + C+ + LLKA+ L + G G R R LN + E C I+L+ +FQG + + +R+ KS+RT G CCW+++ +KR+ + H ++ GN + +PS+W Sbjct: 40 EEVCQKFLDAIADGSVKL---NDKVSGTFEFCQFVLKIQPEPTPILLKAESNPLDS------LGLKGHRALRPLNFKGQGE---CAIILFQSQSFQGQEHKLHKTVRRYPMAMIKSIRTLGPCCWRIY--TKRNGKMYHTVLRGNEDLPSPSDW 179 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000645 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000645 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 7
BLAST of EMLSAG00000000645 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000645 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000645 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000645 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000645 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s10:863142..870599+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000645-683411 ID=EMLSAG00000000645-683411|Name=EMLSAG00000000645|organism=Lepeophtheirus salmonis|type=gene|length=7458bp|location=Sequence derived from alignment at LSalAtl2s10:863142..870599+ (Lepeophtheirus salmonis)back to top Add to Basket
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