EMLSAG00000000732, EMLSAG00000000732-683498 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000732
Unique NameEMLSAG00000000732-683498
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000732 vs. L. salmonis peptides
Match: EMLSAP00000000732 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:83065:83990:1 gene:EMLSAG00000000732 transcript:EMLSAT00000000732 description:"snap_masked-LSalAtl2s1117-processed-gene-1.9")

HSP 1 Score: 164.851 bits (416), Expect = 3.808e-54
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 
Query:    1 MVNLLENKMATSSSNTDPKTGVVKIEVLDELFGYGWDEQPSKQPYYSPPTSTTSGPNSLLHNNNNNNNNNDLATHFDAEND 81
            MVNLLENKMATSSSNTDPKTGVVKIEVLDELFGYGWDEQPSKQPYYSPPTSTTSGPNSLLHNNNNNNNNNDLATHFDAEND
Sbjct:    1 MVNLLENKMATSSSNTDPKTGVVKIEVLDELFGYGWDEQPSKQPYYSPPTSTTSGPNSLLHNNNNNNNNNDLATHFDAEND 81
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000732 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000732 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000732 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000007323.808e-54100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:8306... [more]
back to top
BLAST of EMLSAG00000000732 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000732 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000732 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000732 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1117supercontigLSalAtl2s1117:83065..83990 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1117-processed-gene-1.9
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000732 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000732EMLSAT00000000732-696579Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1117:83065..83990+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000732-683498 ID=EMLSAG00000000732-683498|Name=EMLSAG00000000732|organism=Lepeophtheirus salmonis|type=gene|length=926bp|location=Sequence derived from alignment at LSalAtl2s1117:83065..83990+ (Lepeophtheirus salmonis)
ATGGTGAATCTCTTAGAGAACAAAATGGCAACCTCTTCCTCCAACACAGA
TCCCAAAACTGGAGTGGTTAAAATTGAAGTTCTTGATGAACTCTTTGGCT
ATGGATGGGATGAACAACCCTCCAAACAGCCTTACTACTCMCCCCCTACC
TCCACCACGTCTGGGCCCAACAGTCTCCTACATAACAACAACAATAATAA
TAATAATAACGGTGACAAAATCATGGATAAAGTTGTTCTGGGGCAYCCGG
MCACTMCGMCAGCCTCTCCCATCCATGGCTCCAGCATTGTTTCGAGTAAA
AACCATAGCAAAAAAGCTTCTTTCACTGCAAAAAGTAAGGACATTGCATT
TTCTTTTTAACTAGTCACAAATTATAGTATATAAAACATTTGGTAGAGCA
TTTTTAAAATTTCTCCATGACGTTAAAAAGTGTCAAAGGACTCCAAAGGG
ATAAAAAAGGTTGAGAATCACTCTTGTACGTACTAAGCGCTCTTCTTTAA
TTCCTTCCTTCTTTTGTAAAATGTGCTGAGGGTGGTTGTCTCCTTGATTC
TCTTTAAAGGAAAAAAATGTATCCAATTTTCTCTTGCTTAAGGCCAAAAA
AAAAGCAAGAGAAAAACGGTTGAAACACACACATTTTTAAGGGTCTAGGA
TTACATTTCAAGGAAGAAAAGTGCAAAAGGGCGAGAGAGGTGCTAAGAGA
AGGAATTCATAAGATTGTTTGTATTGAAGGCACTTGCAACTGATTTTGAT
GATGATAATGATAAAAAAAAAAAAAAAATACTTGATCTTATAATATGTAC
CTTAAACATTCTTTTTTCATTCACTCTTTTTGGCAGTTACTGGGGTCATT
AAATTATTAAAGAAAAAATATATATAAATAAATAAATATAGATTTGGCTA
CTCATTTTGATGCCGAGAATGATTAA
back to top
Add to Basket