EMLSAG00000000755, EMLSAG00000000755-683521 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000755
Unique NameEMLSAG00000000755-683521
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000755 vs. C. finmarchicus
Match: gi|592943249|gb|GAXK01015304.1| (TSA: Calanus finmarchicus comp630977_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 4.931e-1
Identity = 14/35 (40.00%), Postives = 24/35 (68.57%), Query Frame = 0
Query:  200 INDLNEIENVGANKKTRLVSPEALMRNPWLQNKCK 234
            ++D  ++E VGA +  RL+SP+ L R PW+++ C 
Sbjct:  464 VDDDGQVEVVGAMRN*RLISPDHLTR-PWVRSDCA 565          
BLAST of EMLSAG00000000755 vs. C. finmarchicus
Match: gi|592796674|gb|GAXK01157894.1| (TSA: Calanus finmarchicus comp202971_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.307e+0
Identity = 31/144 (21.53%), Postives = 64/144 (44.44%), Query Frame = 0
Query:    4 ISFGLSMLLAFLFQVWAQSGLKQDECHALDGTPCLQPTESEVLKYFQYYGWNSTCFKYKGKRRCMIQTGRLRLCSCSKECDCGGIENDLTKKSVFRKPFNMKKYGRKRRINLKSRSAQVPSDIGNTNIKVFEQWQIKIERNEKG 147
            +S G  +L   L ++   +G K    H+  G+     TE+++  Y      N  C   +  +  +I        S S+E D   I++ + K         +K++ R R  +L S++ ++  ++GN +++  E ++  I   E+G
Sbjct: 1270 LSMGCLLLRIALHEIIKPTGEKN---HSEPGSAATNITENKLADY----EGNPECVAGRAVQAAVI--------SYSQEADSYAIQHKVNK---------LKQHHR-RAFDLISKALKIDEEVGNRDVRTVEMYKKGINELERG 1626          
BLAST of EMLSAG00000000755 vs. C. finmarchicus
Match: gi|592917540|gb|GAXK01040835.1| (TSA: Calanus finmarchicus comp5199355_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 5.610e+0
Identity = 19/52 (36.54%), Postives = 26/52 (50.00%), Query Frame = 0
Query:   41 TESEVLKYFQYYGWNSTCFKYKGKRRCM--IQTGRLRLCSCSKECDCGGIEN 90
            T S  +KYF+Y+ W  T  KYK K + +  +Q  + RL      C C  I N
Sbjct:  101 TTSFFIKYFEYFEWKMTSQKYKNK*KLIFVMQPPKYRL-----RCGCNMIVN 241          
BLAST of EMLSAG00000000755 vs. L. salmonis peptides
Match: EMLSAP00000000755 (pep:novel supercontig:LSalAtl2s:LSalAtl2s111:652866:654437:-1 gene:EMLSAG00000000755 transcript:EMLSAT00000000755 description:"snap_masked-LSalAtl2s111-processed-gene-5.5")

HSP 1 Score: 613.609 bits (1581), Expect = 0.000e+0
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query:    1 MARISFGLSMLLAFLFQVWAQSGLKQDECHALDGTPCLQPTESEVLKYFQYYGWNSTCFKYKGKRRCMIQTGRLRLCSCSKECDCGGIENDLTKKSVFRKPFNMKKYGRKRRINLKSRSAQVPSDIGNTNIKVFEQWQIKIERNEKGKTSCYISNPSEDNPNNGLQSSESKETNLDDDLKRSEDLEERSLLSETSPENPINDLNEIENVGANKKTRLVSPEALMRNPWLQNKCKCTCEADHFMNARPLERNNQRLSNLEEDTNEHIDDYNSQLLYPNIHQQSLDEKKVDLRNINDV 296
            MARISFGLSMLLAFLFQVWAQSGLKQDECHALDGTPCLQPTESEVLKYFQYYGWNSTCFKYKGKRRCMIQTGRLRLCSCSKECDCGGIENDLTKKSVFRKPFNMKKYGRKRRINLKSRSAQVPSDIGNTNIKVFEQWQIKIERNEKGKTSCYISNPSEDNPNNGLQSSESKETNLDDDLKRSEDLEERSLLSETSPENPINDLNEIENVGANKKTRLVSPEALMRNPWLQNKCKCTCEADHFMNARPLERNNQRLSNLEEDTNEHIDDYNSQLLYPNIHQQSLDEKKVDLRNINDV
Sbjct:    1 MARISFGLSMLLAFLFQVWAQSGLKQDECHALDGTPCLQPTESEVLKYFQYYGWNSTCFKYKGKRRCMIQTGRLRLCSCSKECDCGGIENDLTKKSVFRKPFNMKKYGRKRRINLKSRSAQVPSDIGNTNIKVFEQWQIKIERNEKGKTSCYISNPSEDNPNNGLQSSESKETNLDDDLKRSEDLEERSLLSETSPENPINDLNEIENVGANKKTRLVSPEALMRNPWLQNKCKCTCEADHFMNARPLERNNQRLSNLEEDTNEHIDDYNSQLLYPNIHQQSLDEKKVDLRNINDV 296          
BLAST of EMLSAG00000000755 vs. L. salmonis peptides
Match: EMLSAP00000000754 (pep:novel supercontig:LSalAtl2s:LSalAtl2s111:578963:580540:1 gene:EMLSAG00000000754 transcript:EMLSAT00000000754 description:"maker-LSalAtl2s111-snap-gene-5.20")

HSP 1 Score: 82.8037 bits (203), Expect = 3.196e-18
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 0
Query:   10 MLLAFLFQVWAQSGLK----QDECHALDGTPCLQPTESEVLKYFQYYGWNSTCFKYKG-KRRCMIQTGRLRLCSCSKEC-DCGG--IENDLTKKSVFRKPFNMKKYGRKRRINLKSRSAQVP 123
              LA    ++   G++    +  C   +G PCL  T+ +V +YFQY+ WNSTCFKY G K+RCM+  G LR C CSK+C  CG   I  D  K + F K  N  K+   +R    S   +VP
Sbjct:    6 FFLALSIMLFLNEGVEMMKDKGGCRTTNGVPCLHKTDPKVYQYFQYHKWNSTCFKYNGRKQRCMVSPGVLRPCKCSKQCGGCGNKRIPTDQRKSTSF-KSLNSHKFKVSQRNGEFSAINKVP 126          
BLAST of EMLSAG00000000755 vs. L. salmonis peptides
Match: EMLSAP00000011068 (pep:novel supercontig:LSalAtl2s:LSalAtl2s747:71658:81234:-1 gene:EMLSAG00000011068 transcript:EMLSAT00000011068 description:"maker-LSalAtl2s747-augustus-gene-0.5")

HSP 1 Score: 58.5362 bits (140), Expect = 8.073e-10
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 0
Query:    7 GLSMLLAFLFQVWAQSGLKQDECHALDGTPCLQPTESEVLKYFQYYGWNSTCFKYKGKRRCMIQTGRLRLCSCSKEC 83
            GL ML+ F F      G+    C +  GT C+   +     YF Y+ WNSTCF Y+    CMI  G L+ C CS++C
Sbjct:  413 GLLMLIGFPFVF----GI----CKSRFGTNCMTIDDPGARVYFAYFNWNSTCFAYQDGHYCMINLGYLQPCDCSQDC 481          

HSP 2 Score: 55.0694 bits (131), Expect = 1.136e-8
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 0
Query:   29 CHALDGTPCLQPTESEVLKYFQYYGWNSTCFKYKGKRRCMIQTGRLRLCSCSKEC 83
            C +++G  C+         YF ++ W STCFKY  +R CMI  G+LR C+C  +C
Sbjct:   24 CKSVNGEICMTKNNQGAAIYFNWFKWESTCFKYSEQRWCMISLGQLRPCTCENKC 78          
BLAST of EMLSAG00000000755 vs. L. salmonis peptides
Match: EMLSAP00000000866 (pep:novel supercontig:LSalAtl2s:LSalAtl2s114:123519:124869:1 gene:EMLSAG00000000866 transcript:EMLSAT00000000866 description:"maker-LSalAtl2s114-augustus-gene-1.6")

HSP 1 Score: 50.0618 bits (118), Expect = 2.869e-7
Identity = 25/70 (35.71%), Postives = 33/70 (47.14%), Query Frame = 0
Query:   14 FLFQVWAQSGLKQDECHALDGTPCLQPTESEVLKYFQYYGWNSTCFKYKGKRRCMIQTGRLRLCSCSKEC 83
             LF     +     EC    G  C+   E     YF+++ + STCFKY  +R CMI  G LR C C+  C
Sbjct:    9 ILFVAVCATKQAISECLTTSGLRCMTKDEDGADLYFKHFKFKSTCFKYNEQRLCMITPGNLRQCECTNNC 78          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000755 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000755 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592943249|gb|GAXK01015304.1|4.931e-140.00TSA: Calanus finmarchicus comp630977_c0_seq1 trans... [more]
gi|592796674|gb|GAXK01157894.1|3.307e+021.53TSA: Calanus finmarchicus comp202971_c0_seq1 trans... [more]
gi|592917540|gb|GAXK01040835.1|5.610e+036.54TSA: Calanus finmarchicus comp5199355_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000755 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000007550.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s111:65286... [more]
EMLSAP000000007543.196e-1839.34pep:novel supercontig:LSalAtl2s:LSalAtl2s111:57896... [more]
EMLSAP000000110688.073e-1038.96pep:novel supercontig:LSalAtl2s:LSalAtl2s747:71658... [more]
EMLSAP000000008662.869e-735.71pep:novel supercontig:LSalAtl2s:LSalAtl2s114:12351... [more]
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BLAST of EMLSAG00000000755 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000755 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000755 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000755 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s111supercontigLSalAtl2s111:652866..654437 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s111-processed-gene-5.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000755 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000755EMLSAT00000000755-696602Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s111:652866..654437-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000755-683521 ID=EMLSAG00000000755-683521|Name=EMLSAG00000000755|organism=Lepeophtheirus salmonis|type=gene|length=1572bp|location=Sequence derived from alignment at LSalAtl2s111:652866..654437- (Lepeophtheirus salmonis)
ATGGCCAGGATTAGTTTCGGTTTGTCTATGCTGCTCGCATTCCTCTTTCA AGTTTGGGCACAAAGTGGTTTGAAACAAGACGAGTGCCATGCATTGGATG GAACTCCTTGTCTTCAACCCACAGAATCAGAGGTATTGAAGTATTTTCAA TACTATGGATGGAACTCCACATGTTTCAAGTATAAGGGTAAAAGGGTAAG ATTTTGATCTTTCAGAGTCTCATGATTTTATTATACACTATTCTATATTA TAAAGAGATGCATGATCCAAACTGGACGACTCCGTCTCTGTTCATGTTCA AAGGAGTGCGATTGTGGAGGCATTGAAAACGATTTGACAAAAAAGTCAGT GTTTCGAAAGCCTTTTAATATGAAAAAGTATGGGAGGAAAAGACGAATCA ATTTGAAATCTAGATCGGCTCAGGTTCCGTCTGACATTGGAAATACAAAT ATTAAAGTATTTGAACAATGGCAAATTAAAATTGAGAGAAATGAAAAGGG AAAGACTTCATGCTATATCAGCAATCCATCCGAGGATAACCCCAATAATG GTCTCCAAAGCTCAGAAAGTAAAGAAACTAATCTAGACGACGATTTAAAA AGAAGTGAGGATTTAGAAGAACGCTCCTTATTGAGTGAAACCTCTCCAGA AAATCCGATAAATGACCTAAACGAAATTGAAAATGTGGGGGCTAATAAAA AAACGAGATTAGTGAGTCCAGAAGCATTAATGCGAAATCCATGGTTACAA AATAAATGCAAGTGTACTTGTGAAGCAGATCACTTTATGAATGCAAGGCC TCTAGAAAGGAATAATCAAAGGCTATCTAATTTGGAAGAAGACACAAATG AACACATAGACGACTATAATTCCCAGCTTTTATACCCAAATATCCATCAA CAATCGTTAGATGAAAAAAAAGTGGATGTAAATTGCAATGACAATGAGAA AACAAACGAGATTCTAAGTCGGTATGAAGAAATCAAACGGATTTTAAAGC AAAATACGCCAGAGCCAACAGGTAATCTATTGTAATTGCAGGGAGTCCAC AGGATTATATATAAATGTATTTTTTTTAATGGAGGGGGGCTTGGTTATTA GAATTTTTTTTGGAAAAAAATCCAAAAGTTAAATTGCAAATATTACATTT TTTCGACAAAATTTTATAAATCCATAGTTATTTACAGAAAATTAAACTTT TAGGAAAATAATTTGAAATAATAATTTAAATTTATATTATTAAATTTTTT TAAATAAAAATTTAAAACATTATATTTTCTAGTAAAAAAACAAAAATTCC TTAATTTGGCGGGGGGSTACACCCCCTTAAACTCATCCCCRGCGGYCGCC CCRGAATTACCRAAAACCCATTCTTATTTTTATTTCAAAGCTCTGGGCCT TCATATTTAATTTTAGAAAAGACAAATGATGATGAAACTTCGGATCGTGG AATGTTTTCCTTTGTTGGTACTCTAAACAAGACTGTAAATACCAAACTCC AACATCATCATCATAATTTTCAAACATAAAGTACACATTTTTCTTTAGCT AAGGAATATAAATGATGTTTAA
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