EMLSAG00000000775, EMLSAG00000000775-683541 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000775
Unique NameEMLSAG00000000775-683541
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000775 vs. C. finmarchicus
Match: gi|592887209|gb|GAXK01071166.1| (TSA: Calanus finmarchicus comp2036492_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.708e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0
Query:   11 TEDIVVAGNNIPNTSIIKWENDRNDLYCLMN 41
            T+D  V  N +  + +I++EN+RND Y + N
Sbjct:  231 TDDYEVKKNEVETSELIQYENERNDKYEVRN 323          
BLAST of EMLSAG00000000775 vs. L. salmonis peptides
Match: EMLSAP00000000775 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1124:54869:55594:-1 gene:EMLSAG00000000775 transcript:EMLSAT00000000775 description:"maker-LSalAtl2s1124-snap-gene-0.2")

HSP 1 Score: 389.423 bits (999), Expect = 3.106e-139
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query:    1 MALAKVSGLPTEDIVVAGNNIPNTSIIKWENDRNDLYCLMNSLKTKFKIFTYAEKKNLTLPPQIDIVTYKDDGNSKVMPSYKDHKCGMQKRLMLCTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK 187
            MALAKVSGLPTEDIVVAGNNIPNTSIIKWENDRNDLYCLMNSLKTKFKIFTYAEKKNLTLPPQIDIVTYKDDGNSKVMPSYKDHKCGMQKRLMLCTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK
Sbjct:    1 MALAKVSGLPTEDIVVAGNNIPNTSIIKWENDRNDLYCLMNSLKTKFKIFTYAEKKNLTLPPQIDIVTYKDDGNSKVMPSYKDHKCGMQKRLMLCTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK 187          
BLAST of EMLSAG00000000775 vs. Select Arthropod Genomes
Match: EFX66632.1 (hypothetical protein DAPPUDRAFT_116125 [Daphnia pulex])

HSP 1 Score: 59.6918 bits (143), Expect = 7.096e-10
Identity = 44/141 (31.21%), Postives = 61/141 (43.26%), Query Frame = 0
Query:   63 QIDIVTYKDDGNSKVMPSYKD---------HKCGMQKRLMLCTQAHIDTE--------------ISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKED--VCDMDDKLCMVHNCENCPGQSNL 178
            Q  I  Y  D  S+ +P  ++          +  MQKRL+LC  A +  E                +S F  L P   V  GA GT+ VC    +QN  LM SA +   +K +  D  VC + ++ CM+  C  CPG  NL
Sbjct:  281 QTIIDFYVSDEYSRQLPGMRNVKSVKLSDGQRIKMQKRLLLCNIADLHIEYKKKMNLTTGSRKPFGFSIFVSLRPSHVVTVGAGGTHSVCVCVYHQNVKLMLSAIDVVNEKNLFMDKIVCSVHNQECMMDRCAACPGTENL 421          
BLAST of EMLSAG00000000775 vs. Select Arthropod Genomes
Match: EFX75283.1 (hypothetical protein DAPPUDRAFT_108106 [Daphnia pulex])

HSP 1 Score: 58.151 bits (139), Expect = 2.210e-9
Identity = 43/141 (30.50%), Postives = 63/141 (44.68%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKDHKC---------GMQKRLMLCTQAHIDTE-------------ISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKED--VCDMDDKLCMVHNCENCPGQSNLAKKVLEL 185
            Y  D  S+ +P  K  K           +QKRL+L     +  E             + +S FA L PK  +  G+SGT+ VC    +QN  LM S+     ++ +  D  VC + +K CM+  C NCPG + L   + EL
Sbjct:  290 YISDEYSRQLPGMKSVKSVKQADGKRLKVQKRLLLLNIDELHGEYKKKFKDIVGIKTVGFSAFADLRPKHVITVGSSGTHSVCVCVYHQNVKLMLSSIGLGEERHLLMDKVVCSVYNKTCMLSGCPNCPGSNALESFLEEL 430          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|828193898|ref|XP_012564554.1| (PREDICTED: uncharacterized protein LOC101237435 [Hydra vulgaris])

HSP 1 Score: 70.8626 bits (172), Expect = 4.453e-11
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 0
Query:  104 ISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREF--DYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAK 180
            I +SKF  L PK C+  GASGT+ VC   ++QN +L+++A +    YK  M + VCD+    CMVH C NCP   +L K
Sbjct:  863 IGFSKFCSLRPKWCITVGASGTHSVCVCTLHQNAILLTNAIQMKCTYKDMMTKVVCDVTSNECMVHRCPNCPSMVSLKK 941          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|307179730|gb|EFN67941.1| (hypothetical protein EAG_06621, partial [Camponotus floridanus])

HSP 1 Score: 69.707 bits (169), Expect = 7.152e-11
Identity = 53/149 (35.57%), Postives = 72/149 (48.32%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKD-----HKCGMQ----KRLMLCT---------QAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREF------------DYKKRMKEDVCDMDDKLCMVHNCENCPGQS---NLAKKVLE 184
            Y +D  S++MPS KD     +K G +    KRL+L           + H   +IS+SKFA L PK C+LPGASGT+ VC   ++QN  LM  A               +YK  +K+ VC      C +  C  CPG     +L +K LE
Sbjct:   18 YNNDMYSRIMPSKKDVVSVKNKDGTREEKHKRLLLLNMKELYSCFKETHPKIQISFSKFAFLRPKYCILPGASGTHSVCVCTIHQNMKLMLDAINLKQLTENASTLLSNYKDCIKKMVCSNPTSECYIDKCNKCPGTEKIISLIRKQLE 166          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1009378636|gb|KYN01836.1| (hypothetical protein ALC62_07308 [Cyphomyrmex costatus])

HSP 1 Score: 69.707 bits (169), Expect = 1.004e-10
Identity = 50/147 (34.01%), Postives = 67/147 (45.58%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKD--------HKCGMQKRLMLCT---------QAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFD------------YKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            Y+DD NS++MP  KD         K  +QKRL+L             H +  I +SKFA+L P  CVL GASGT+ V     +QN  LM  A                YK  ++  VC      C +  C+ CPG   L  +++ELF
Sbjct:  188 YEDDENSRIMPGTKDTVSIKVDGKKTILQKRLVLSNLKELHRLYIAKHPNNHIGFSKFAELRPPNCVLAGASGTHCVYVCTCHQNFKLMVDAANLSKLTADSEQPLKTYKDCIENIVCSEPGAGCFLDECKLCPGVEPLTTRLMELF 334          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1009370063|gb|KYM94585.1| (hypothetical protein ALC62_14783 [Cyphomyrmex costatus])

HSP 1 Score: 69.3218 bits (168), Expect = 1.722e-10
Identity = 45/145 (31.03%), Postives = 70/145 (48.28%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKDH--------KCGMQKRLMLC---------TQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREF------------DYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLE 184
            + DD NS+ MP  KD         +  +QKRL+L           +++ +  +S+S FA+L PK C+LPGASGT+ +C   ++QN  LM  A               DYK  +    C+     C + +C  CP  +N++  +LE
Sbjct:  126 FNDDSNSRFMPGKKDVVSVKKNGVRTNVQKRLLLIDLKGLHVLFNESNPENTLSFSAFAKLRPKHCILPGASGTHSMCVCTIHQNCKLMLDAINIAALTQNSDNPINDYKDCINLITCNDATSDCFLDSCNQCPAINNISNLLLE 270          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1009377178|gb|KYN00525.1| (hypothetical protein ALC62_08698 [Cyphomyrmex costatus] >gi|1009433341|gb|KYN50287.1| hypothetical protein ALC62_09899 [Cyphomyrmex costatus])

HSP 1 Score: 68.9366 bits (167), Expect = 2.196e-10
Identity = 48/135 (35.56%), Postives = 64/135 (47.41%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKD--------HKCGMQKRLMLC---------TQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREF------------DYKKRMKEDVCDMDDKLCMVHNCENCPG 174
            Y DD  S++MP  KD         +  +QKRL+L          T+ H D  IS+S FA+L PK C+LPG SGT+ VC   ++QN  LM  A               DYK  +   VC      C ++ C+ CPG
Sbjct:  186 YNDDTISRIMPGVKDAISVKADNKRLKVQKRLLLLNLKELHASFTEFHPDVSISFSAFAKLRPKYCILPGGSGTHSVCVCTIHQNCKLMLDAINVADLTKESVFPICDYKDCLNLIVCRTASSACFLNECKLCPG 320          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1009387686|gb|KYN09771.1| (hypothetical protein ALC57_18105, partial [Trachymyrmex cornetzi])

HSP 1 Score: 68.5514 bits (166), Expect = 2.850e-10
Identity = 50/151 (33.11%), Postives = 66/151 (43.71%), Query Frame = 0
Query:   66 IVTYKDDGNSKVMPSYKDH--------KCGMQKRLMLCTQAHI---------DTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREF------------DYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK 187
            I  Y  D  S+VMP  KD         +  MQKRL+L     +         D + S SKFA L PK C+L GASGT+ VC   +++N  LM                  DY    K+ VCD     C +  C  CPG  NL + +  +F+
Sbjct:   10 IAFYNSDEYSRVMPGQKDFVSVKVDGKRNHMQKRLILNNLKELHRAFKNTNPDVKCSLSKFASLRPKYCILAGASGTHSVCVCAIHENVKLMIDGASIKSLTATTEHVISDYHDCFKKMVCDSPSTDCYMGTCSECPGVQNLIEYLETVFE 160          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1009386672|gb|KYN08848.1| (hypothetical protein ALC57_19051, partial [Trachymyrmex cornetzi])

HSP 1 Score: 68.5514 bits (166), Expect = 2.852e-10
Identity = 50/151 (33.11%), Postives = 66/151 (43.71%), Query Frame = 0
Query:   66 IVTYKDDGNSKVMPSYKDH--------KCGMQKRLMLCTQAHI---------DTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREF------------DYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK 187
            I  Y  D  S+VMP  KD         +  MQKRL+L     +         D + S SKFA L PK C+L GASGT+ VC   +++N  LM                  DY    K+ VCD     C +  C  CPG  NL + +  +F+
Sbjct:   10 IAFYNSDEYSRVMPGQKDFVSVKVDGKRNHMQKRLILNNLKELHRAFKNTNPDVKCSLSKFASLRPKYCILAGASGTHSVCVCAIHENVKLMIDGASIKSLTATTEHVISDYHDCFKKMVCDSPSTDCYMGTCSECPGVQNLIEYLETVFE 160          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|223587769|emb|CAR82258.1| (hypothetical protein [Cotesia congregata])

HSP 1 Score: 68.1662 bits (165), Expect = 3.541e-10
Identity = 51/158 (32.28%), Postives = 81/158 (51.27%), Query Frame = 0
Query:   42 SLKTKFKIFTYAEKKNLTLPPQIDIVT-----YKDDGNSKVMPSYKD---------HKCGMQKRLMLCT---------QAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQND--VLMSSAREFDYKKRMKEDVCDMDDKLCMVHNCENCPG 174
            +L+ ++ +   A KK      + +IV      ++DD  S++MP  +D          K   QKRL+L           Q H +  I +S FA L PK CVL G SGT+ VC   ++QN   +LM+   +  YK+ +K+ VC+   + CM+++C+ CPG
Sbjct:  283 TLRAQYGVLAKAPKKESGRQLKTEIVEAVIKFFEDDDISRLMPGQRDCVTVRDKNNGKSKEQKRLILFNLKEAYEKFKQIHPNLAIGFSSFASLRPKNCVLAGVSGTHSVCVCLIHQNMKLMLMACKTKLLYKELLKKIVCNDSSEQCMLYSCKECPG 440          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1048060513|ref|XP_017483733.1| (PREDICTED: uncharacterized protein LOC108372525 [Rhagoletis zephyria])

HSP 1 Score: 67.781 bits (164), Expect = 4.436e-10
Identity = 46/147 (31.29%), Postives = 70/147 (47.62%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKD--------HKCGMQKRLMLCT---------QAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLM-----------SSAREFD-YKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            Y+ D  S++MP  KD         K  MQKR++LC            H D +I ++KF QL PK CVL G+SGT+ VC    ++N  LM            S  + + Y+  +K  +C      C +  C NCPG + + + +++ F
Sbjct:  202 YQRDDMSRLMPGMKDWVSVRIDGKKVQMQKRIILCNLNELFASFQSEHEDIKIGFTKFTQLRPKHCVLAGSSGTHTVCVCIYHENVKLMLKEINLNYLTNDSPEDLNSYRDCLKLTMCPNVSTSCHLGECSNCPGTTFIKENLVKSF 348          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1048066291|ref|XP_017485653.1| (PREDICTED: uncharacterized protein LOC108374192 [Rhagoletis zephyria])

HSP 1 Score: 67.781 bits (164), Expect = 4.835e-10
Identity = 46/147 (31.29%), Postives = 70/147 (47.62%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKD--------HKCGMQKRLMLCT---------QAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLM-----------SSAREFD-YKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            Y+ D  S++MP  KD         K  MQKR++LC            H D +I ++KF QL PK CVL G+SGT+ VC    ++N  LM            S  + + Y+  +K  +C      C +  C NCPG + + + +++ F
Sbjct:  202 YQRDDMSRLMPGMKDWVSVRIDGKKVQMQKRIILCNLNELFASFQSEHEDIKIGFTKFTQLRPKHCVLAGSSGTHTVCVCIYHENVKLMLKEINLNYLTNDSPEDLNSYRDCLKLTMCPNVSTSCHLGECSNCPGTTFIKENLVKSF 348          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000775 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000775 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592887209|gb|GAXK01071166.1|1.708e+038.71TSA: Calanus finmarchicus comp2036492_c0_seq1 tran... [more]
back to top
BLAST of EMLSAG00000000775 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000007753.106e-139100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1124:5486... [more]
back to top
BLAST of EMLSAG00000000775 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000775 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
EFX66632.17.096e-1031.21hypothetical protein DAPPUDRAFT_116125 [Daphnia pu... [more]
EFX75283.12.210e-930.50hypothetical protein DAPPUDRAFT_108106 [Daphnia pu... [more]
back to top
BLAST of EMLSAG00000000775 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|828193898|ref|XP_012564554.1|4.453e-1144.30PREDICTED: uncharacterized protein LOC101237435 [H... [more]
gi|307179730|gb|EFN67941.1|7.152e-1135.57hypothetical protein EAG_06621, partial [Camponotu... [more]
gi|1009378636|gb|KYN01836.1|1.004e-1034.01hypothetical protein ALC62_07308 [Cyphomyrmex cost... [more]
gi|1009370063|gb|KYM94585.1|1.722e-1031.03hypothetical protein ALC62_14783 [Cyphomyrmex cost... [more]
gi|1009377178|gb|KYN00525.1|2.196e-1035.56hypothetical protein ALC62_08698 [Cyphomyrmex cost... [more]
gi|1009387686|gb|KYN09771.1|2.850e-1033.11hypothetical protein ALC57_18105, partial [Trachym... [more]
gi|1009386672|gb|KYN08848.1|2.852e-1033.11hypothetical protein ALC57_19051, partial [Trachym... [more]
gi|223587769|emb|CAR82258.1|3.541e-1032.28hypothetical protein [Cotesia congregata][more]
gi|1048060513|ref|XP_017483733.1|4.436e-1031.29PREDICTED: uncharacterized protein LOC108372525 [R... [more]
gi|1048066291|ref|XP_017485653.1|4.835e-1031.29PREDICTED: uncharacterized protein LOC108374192 [R... [more]

Pages

back to top
BLAST of EMLSAG00000000775 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1124supercontigLSalAtl2s1124:54869..55594 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1124-snap-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NotePREDICTED: uncharacterized protein LOC105845505 [Hydra vulgaris]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000775 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000775EMLSAT00000000775-696622Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1124:54869..55594-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000775-683541 ID=EMLSAG00000000775-683541|Name=EMLSAG00000000775|organism=Lepeophtheirus salmonis|type=gene|length=726bp|location=Sequence derived from alignment at LSalAtl2s1124:54869..55594- (Lepeophtheirus salmonis)
ATGGCTCTTGCTAAAGTTTCTGGACTTCCTACAGAAGATATTGTAGTAGC AGGAAATAACATACCAAATACCAGCATCATTAAATGGGAAAATGACAGGA ATGATTTGTACTGTCTCATGAATTCTCTTAAAACTAAATTCAAAATATTT ACCTACGCAGAAAAAAAAAATCTAACTCTACCTCCCCAGTCATTGACTTT AGCAGATATGCAAGCTTTTTTTGGGCTGCACAGAGTATACTGCAGGAAAA GCTAGATATCTTAAAGAAAAGGGTTGGTTCACTTAATGGATACCAAAGAA AAGTTGGAGATAGTCTTTCTAAAGAATTGATATTGTCACGTACAAAGATG ATGGAAACTCTAAAGTCATGCCAAGCTACAAGGATCATAAATGTGGCATG CAAAAACGTCTAATGCTTTGCACAGTGACAGAATTATACAACTTATTTAG CAAGCACACATTGATACTGAGATAAGCTATAGTAAATTTGCRCAACTAAT ACCAAAATGCTGTGTTCTGCCTGGAGCCTCAGGAACATACAAAGTTTGTG CTGGTTTTGTTTACCAGAATGATGTATTAATGTCCTCAGCTCGTGAATTT GATTACAAAAAGCGTATGAAAGAGGATGTTTGTGACATGGACGACAAACT CTGCATGGTCCACAATTGTGAAAATTGTCCAGGCCAATCCAATTTGGCAA AGAAAGTACTGGAACTTTTCAAATAG
back to top
Add to Basket