EMLSAG00000000775, EMLSAG00000000775-683541 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000775
Unique NameEMLSAG00000000775-683541
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000775 vs. C. finmarchicus
Match: gi|592887209|gb|GAXK01071166.1| (TSA: Calanus finmarchicus comp2036492_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.708e+0
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 0
Query:   11 TEDIVVAGNNIPNTSIIKWENDRNDLYCLMN 41
            T+D  V  N +  + +I++EN+RND Y + N
Sbjct:  231 TDDYEVKKNEVETSELIQYENERNDKYEVRN 323          
BLAST of EMLSAG00000000775 vs. L. salmonis peptides
Match: EMLSAP00000000775 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1124:54869:55594:-1 gene:EMLSAG00000000775 transcript:EMLSAT00000000775 description:"maker-LSalAtl2s1124-snap-gene-0.2")

HSP 1 Score: 389.423 bits (999), Expect = 3.106e-139
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0
Query:    1 MALAKVSGLPTEDIVVAGNNIPNTSIIKWENDRNDLYCLMNSLKTKFKIFTYAEKKNLTLPPQIDIVTYKDDGNSKVMPSYKDHKCGMQKRLMLCTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK 187
            MALAKVSGLPTEDIVVAGNNIPNTSIIKWENDRNDLYCLMNSLKTKFKIFTYAEKKNLTLPPQIDIVTYKDDGNSKVMPSYKDHKCGMQKRLMLCTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK
Sbjct:    1 MALAKVSGLPTEDIVVAGNNIPNTSIIKWENDRNDLYCLMNSLKTKFKIFTYAEKKNLTLPPQIDIVTYKDDGNSKVMPSYKDHKCGMQKRLMLCTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK 187          
BLAST of EMLSAG00000000775 vs. Select Arthropod Genomes
Match: EFX66632.1 (hypothetical protein DAPPUDRAFT_116125 [Daphnia pulex])

HSP 1 Score: 59.6918 bits (143), Expect = 7.096e-10
Identity = 44/141 (31.21%), Postives = 61/141 (43.26%), Query Frame = 0
Query:   63 QIDIVTYKDDGNSKVMPSYKD---------HKCGMQKRLMLCTQAHIDTE--------------ISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKED--VCDMDDKLCMVHNCENCPGQSNL 178
            Q  I  Y  D  S+ +P  ++          +  MQKRL+LC  A +  E                +S F  L P   V  GA GT+ VC    +QN  LM SA +   +K +  D  VC + ++ CM+  C  CPG  NL
Sbjct:  281 QTIIDFYVSDEYSRQLPGMRNVKSVKLSDGQRIKMQKRLLLCNIADLHIEYKKKMNLTTGSRKPFGFSIFVSLRPSHVVTVGAGGTHSVCVCVYHQNVKLMLSAIDVVNEKNLFMDKIVCSVHNQECMMDRCAACPGTENL 421          
BLAST of EMLSAG00000000775 vs. Select Arthropod Genomes
Match: EFX75283.1 (hypothetical protein DAPPUDRAFT_108106 [Daphnia pulex])

HSP 1 Score: 58.151 bits (139), Expect = 2.210e-9
Identity = 43/141 (30.50%), Postives = 63/141 (44.68%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKDHKC---------GMQKRLMLCTQAHIDTE-------------ISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFDYKKRMKED--VCDMDDKLCMVHNCENCPGQSNLAKKVLEL 185
            Y  D  S+ +P  K  K           +QKRL+L     +  E             + +S FA L PK  +  G+SGT+ VC    +QN  LM S+     ++ +  D  VC + +K CM+  C NCPG + L   + EL
Sbjct:  290 YISDEYSRQLPGMKSVKSVKQADGKRLKVQKRLLLLNIDELHGEYKKKFKDIVGIKTVGFSAFADLRPKHVITVGSSGTHSVCVCVYHQNVKLMLSSIGLGEERHLLMDKVVCSVYNKTCMLSGCPNCPGSNALESFLEEL 430          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1048002055|ref|XP_017473543.1| (PREDICTED: uncharacterized protein LOC108364380 [Rhagoletis zephyria] >gi|1048005507|ref|XP_017490024.1| PREDICTED: uncharacterized protein LOC108378244 [Rhagoletis zephyria] >gi|1048017894|ref|XP_017470011.1| PREDICTED: uncharacterized protein LOC108361772 [Rhagoletis zephyria] >gi|1048021305|ref|XP_017471158.1| PREDICTED: uncharacterized protein LOC108362614 [Rhagoletis zephyria] >gi|1048048687|ref|XP_017479386.1| PREDICTED: uncharacterized protein LOC108368929 [Rhagoletis zephyria])

HSP 1 Score: 67.781 bits (164), Expect = 4.835e-10
Identity = 46/147 (31.29%), Postives = 70/147 (47.62%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKD--------HKCGMQKRLMLCT---------QAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLM-----------SSAREFD-YKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            Y+ D  S++MP  KD         K  MQKR++LC            H D +I ++KF QL PK CVL G+SGT+ VC    ++N  LM            S  + + Y+  +K  +C      C +  C NCPG + + + +++ F
Sbjct:  202 YQRDDMSRLMPGMKDWVSVRIDGKKVQMQKRIILCNLNELFASFQSEHEDIKIGFTKFTQLRPKHCVLAGSSGTHTVCVCIYHENVKLMLKEINLNYLTNDSPEDLNSYRDCLKLTMCPNVSTSCHLGECSNCPGTTFIKENLVKSF 348          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1048028977|ref|XP_017475233.1| (PREDICTED: uncharacterized protein LOC108365655 [Rhagoletis zephyria])

HSP 1 Score: 67.781 bits (164), Expect = 4.890e-10
Identity = 46/147 (31.29%), Postives = 70/147 (47.62%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKD--------HKCGMQKRLMLCT---------QAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLM-----------SSAREFD-YKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            Y+ D  S++MP  KD         K  MQKR++LC            H D +I ++KF QL PK CVL G+SGT+ VC    ++N  LM            S  + + Y+  +K  +C      C +  C NCPG + + + +++ F
Sbjct:  154 YQRDDMSRLMPGMKDWVSVRIDGKKVQMQKRIILCNLNELFASFQSEHEDIKIGFTKFTQLRPKHCVLAGSSGTHTVCVCIYHENVKLMLKEINLNYLTNDSPEDLNSYRDCLKLTMCPNVSTSCHLGECSNCPGTTFIKENLVKSF 300          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1009402076|gb|KYN21878.1| (hypothetical protein ALC57_05740 [Trachymyrmex cornetzi])

HSP 1 Score: 67.0106 bits (162), Expect = 1.036e-9
Identity = 45/147 (30.61%), Postives = 73/147 (49.66%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKD--------HKCGMQKRLM---------LCTQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREFD------------YKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            Y  D NS++MP  KD         +  +QKRL+         L  + + D  I +SKFA L PK C+LPGASGT+ VC   ++ N  L+  A + +            YK  +++  C+   + C + +C+ CP  +N+ + +L+L 
Sbjct:  175 YISDENSRIMPGKKDVVSVKNENGRSLVQKRLLLLDLKGLFCLYKERNQDFPIGFSKFALLRPKECILPGASGTHSVCVCIIHHNCKLLLDAIDIEKLTKNSENPIKNYKDVLRQITCEHPSENCYLGDCDECPSIANVCRYLLQLL 321          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|1012980521|gb|KYQ54441.1| (hypothetical protein ALC60_06673 [Trachymyrmex zeteki])

HSP 1 Score: 67.0106 bits (162), Expect = 1.040e-9
Identity = 48/148 (32.43%), Postives = 71/148 (47.97%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKD--------HKCGMQKRLMLC---------TQAHIDTEISYSKFAQLIPKCCVLPGASGTYKVCAGFVYQNDVLMSSAREF------------DYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELFK 187
            Y+ D NS+V+P  KD         +C   KRL+L           +++ D ++ +SKFAQL P+ C+L G+SGT+ VC   ++QN  LM  A               DYK  +++  C    + C +  CE CP  S L   V EL +
Sbjct:   82 YESDTNSRVIPGMKDVISVKNEDGRC--LKRLLLFDLRGLFLAFKESNPDIKVGFSKFAQLRPRQCILAGSSGTHSVCVCTIHQNCKLMLDAVNITKLTEKSVKPISDYKDCLQQITCTDPSEECSLGECEKCPNISELMLNVQELLE 227          
BLAST of EMLSAG00000000775 vs. nr
Match: gi|828207236|ref|XP_012557214.1| (PREDICTED: uncharacterized protein LOC100212627 [Hydra vulgaris])

HSP 1 Score: 64.6994 bits (156), Expect = 5.648e-9
Identity = 44/138 (31.88%), Postives = 69/138 (50.00%), Query Frame = 0
Query:   69 YKDDGNSKVMPSYKDH--------KCGMQKRLMLCT---------QAHIDTEISYSKFAQLIPKCCV-LPGASGTYKVCAGFVYQNDVLMSSARE--FDYKKRMKEDVCDMDDKLCMVHNCENCPGQSNLAKKVLELF 186
            Y+ D  S++ P  K +        +   QKRL+L           +  +D +I +SKF +L PK C+ + GASG + VC    +QN  L++       DYK  +   VCD+ ++ CM+H C+NCP    L + +  LF
Sbjct:  489 YQSDEYSRMCPGKKQYVSTQVDGKRHHFQKRLLLLNIRELYLEFGKISLDVKIRFSKFCELRPKWCIPVGGASGLHSVCVCEYHQNAKLLALKIPDISDYKNLLTLVVCDLTNRDCMLHCCDNCPDNDTLKEYLTTLF 626          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000775 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000775 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592887209|gb|GAXK01071166.1|1.708e+038.71TSA: Calanus finmarchicus comp2036492_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000775 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000007753.106e-139100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1124:5486... [more]
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BLAST of EMLSAG00000000775 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000775 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
EFX66632.17.096e-1031.21hypothetical protein DAPPUDRAFT_116125 [Daphnia pu... [more]
EFX75283.12.210e-930.50hypothetical protein DAPPUDRAFT_108106 [Daphnia pu... [more]
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BLAST of EMLSAG00000000775 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|1048002055|ref|XP_017473543.1|4.835e-1031.29PREDICTED: uncharacterized protein LOC108364380 [R... [more]
gi|1048028977|ref|XP_017475233.1|4.890e-1031.29PREDICTED: uncharacterized protein LOC108365655 [R... [more]
gi|1009402076|gb|KYN21878.1|1.036e-930.61hypothetical protein ALC57_05740 [Trachymyrmex cor... [more]
gi|1012980521|gb|KYQ54441.1|1.040e-932.43hypothetical protein ALC60_06673 [Trachymyrmex zet... [more]
gi|828207236|ref|XP_012557214.1|5.648e-931.88PREDICTED: uncharacterized protein LOC100212627 [H... [more]

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BLAST of EMLSAG00000000775 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1124supercontigLSalAtl2s1124:54869..55594 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1124-snap-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NotePREDICTED: uncharacterized protein LOC105845505 [Hydra vulgaris]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000775 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000775EMLSAT00000000775-696622Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1124:54869..55594-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000775-683541 ID=EMLSAG00000000775-683541|Name=EMLSAG00000000775|organism=Lepeophtheirus salmonis|type=gene|length=726bp|location=Sequence derived from alignment at LSalAtl2s1124:54869..55594- (Lepeophtheirus salmonis)
ATGGCTCTTGCTAAAGTTTCTGGACTTCCTACAGAAGATATTGTAGTAGC AGGAAATAACATACCAAATACCAGCATCATTAAATGGGAAAATGACAGGA ATGATTTGTACTGTCTCATGAATTCTCTTAAAACTAAATTCAAAATATTT ACCTACGCAGAAAAAAAAAATCTAACTCTACCTCCCCAGTCATTGACTTT AGCAGATATGCAAGCTTTTTTTGGGCTGCACAGAGTATACTGCAGGAAAA GCTAGATATCTTAAAGAAAAGGGTTGGTTCACTTAATGGATACCAAAGAA AAGTTGGAGATAGTCTTTCTAAAGAATTGATATTGTCACGTACAAAGATG ATGGAAACTCTAAAGTCATGCCAAGCTACAAGGATCATAAATGTGGCATG CAAAAACGTCTAATGCTTTGCACAGTGACAGAATTATACAACTTATTTAG CAAGCACACATTGATACTGAGATAAGCTATAGTAAATTTGCRCAACTAAT ACCAAAATGCTGTGTTCTGCCTGGAGCCTCAGGAACATACAAAGTTTGTG CTGGTTTTGTTTACCAGAATGATGTATTAATGTCCTCAGCTCGTGAATTT GATTACAAAAAGCGTATGAAAGAGGATGTTTGTGACATGGACGACAAACT CTGCATGGTCCACAATTGTGAAAATTGTCCAGGCCAATCCAATTTGGCAA AGAAAGTACTGGAACTTTTCAAATAG
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