EMLSAG00000000801, EMLSAG00000000801-683567 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000801
Unique NameEMLSAG00000000801-683567
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000801 vs. C. finmarchicus
Match: gi|592766302|gb|GAXK01188266.1| (TSA: Calanus finmarchicus comp10636_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.445e+0
Identity = 18/43 (41.86%), Postives = 23/43 (53.49%), Query Frame = 0 
Query:    4 KLTTVPNMEHIVTGQLWPTRVNETK--RATPDNIMLPRLPSNV 44
            K T    M  ++  +LWP RVN  K  RA    +MLPRL S +
Sbjct:  561 KQTVFQ*MNSLMPSKLWPKRVNH*KILRA----VMLPRLSSTL 677
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BLAST of EMLSAG00000000801 vs. L. salmonis peptides
Match: EMLSAP00000000801 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:166300:166505:-1 gene:EMLSAG00000000801 transcript:EMLSAT00000000801 description:"maker-LSalAtl2s1136-snap-gene-1.93")

HSP 1 Score: 138.658 bits (348), Expect = 2.811e-44
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 
Query:    1 MAAKLTTVPNMEHIVTGQLWPTRVNETKRATPDNIMLPRLPSNVIFYQWNDEIKRNGEKCWEYED 65
            MAAKLTTVPNMEHIVTGQLWPTRVNETKRATPDNIMLPRLPSNVIFYQWNDEIKRNGEKCWEYED
Sbjct:    1 MAAKLTTVPNMEHIVTGQLWPTRVNETKRATPDNIMLPRLPSNVIFYQWNDEIKRNGEKCWEYED 65
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000801 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000801 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592766302|gb|GAXK01188266.1|5.445e+041.86TSA: Calanus finmarchicus comp10636_c1_seq2 transc... [more]
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BLAST of EMLSAG00000000801 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008012.811e-44100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:1663... [more]
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BLAST of EMLSAG00000000801 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000801 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000801 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000801 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1136supercontigLSalAtl2s1136:166300..166505 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1136-snap-gene-1.93
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000801 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000801EMLSAT00000000801-696648Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1136:166300..166505-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000801-683567 ID=EMLSAG00000000801-683567|Name=EMLSAG00000000801|organism=Lepeophtheirus salmonis|type=gene|length=206bp|location=Sequence derived from alignment at LSalAtl2s1136:166300..166505- (Lepeophtheirus salmonis)
ATGGCAGCGAAACTAACGACTGTTCCAAATATGGAGCACATTGTGACTGG
CCAATTGTGGCCTACGAGGGTTAATGAGACTAAGAGAGCAACCCCAGATA
ATATCATGCTTCCTGTTAATAGAGGCTTCCTTCCAATGTGATTTTCTATC
AATGGAATGACGAAATTAAGAGGAATGGCGAAAAATGTTGGGAATACGAA
GACTAA
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