EMLSAG00000000802, EMLSAG00000000802-683568 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000802
Unique NameEMLSAG00000000802-683568
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000802 vs. C. finmarchicus
Match: gi|592871120|gb|GAXK01086442.1| (TSA: Calanus finmarchicus comp479109_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.4394 bits (106), Expect = 4.186e-6
Identity = 37/85 (43.53%), Postives = 42/85 (49.41%), Query Frame = 0
Query:    4 NGLVVDAAASHSPNVSGSRMFFVSGQSQMLRIPPVKLTKPYTPIGNAGCILSNEPTIGDKILPKRAATVAKLRAVVRSTVGKSSL 88
            NGL +    S S  VSGS    VSG+  + R P  K+  P T IG  G I +     G  I P  A   AK RA  R TVGKSSL
Sbjct:  286 NGLFLLRNISPSTKVSGSFFLLVSGRRMVCR-PTTKVIVPNTKIGRIGSISAR*AINGAVIEPILAMEQAKERATDRMTVGKSSL 537          
BLAST of EMLSAG00000000802 vs. C. finmarchicus
Match: gi|592805408|gb|GAXK01149160.1| (TSA: Calanus finmarchicus comp96011_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 8.804e-5
Identity = 35/84 (41.67%), Postives = 43/84 (51.19%), Query Frame = 0
Query:    6 LVVDAAASHSPNVSGSRM-FFVSGQSQMLRIPPVKLTKPYTPIGNAGCILSNEPTIGDKILPKRAATVAKLRAVVRSTVGKSSL 88
            L+  AA S S  VSGS +   VSG S  LR+PP   T PYT +   G  +S + T G  + P  AA +   RA    TVG  SL
Sbjct: 1351 LLPPAATSPSSKVSGSMVHLLVSGCSIKLRMPPTMATTPYTRMDMPGL*VSVKTTKGAMMAPSLAALLQVARAEFLMTVGNISL 1602          
BLAST of EMLSAG00000000802 vs. C. finmarchicus
Match: gi|592754121|gb|GAXK01200292.1| (TSA: Calanus finmarchicus comp307940_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 5.383e-4
Identity = 35/84 (41.67%), Postives = 40/84 (47.62%), Query Frame = 0
Query:    5 GLVVDAAASHSPNVSGSRMFFVSGQSQMLRIPPVKLTKPYTPIGNAGCILSNEPTIGDKILPKRAATVAKLRAVVRSTVGKSSL 88
            GL      S S  VSGS   FVSG S M+  P  K+  P T IG+ G   +     G  + P  A   A  RA  R TVGKSSL
Sbjct:   79 GLFFLRNISPSCKVSGSFFLFVSG-SNMV*SPTTKVIVPNTKIGSTGFTSAK*AMKGASMDPILAMEQANDRATDRITVGKSSL 327          
BLAST of EMLSAG00000000802 vs. C. finmarchicus
Match: gi|592751853|gb|GAXK01202560.1| (TSA: Calanus finmarchicus comp6536121_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.827e-1
Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = 0
Query:   23 MFFVSGQSQMLRIPPVKLTKPYTPIGNAGCILSNEPT 59
             FF+    ++LR+PPV+L  P  P+    C+ S+ P 
Sbjct:  136 FFFICEGVELLRLPPVRLNTP--PVIAVDCVSSSNPC 240          
BLAST of EMLSAG00000000802 vs. C. finmarchicus
Match: gi|592774224|gb|GAXK01180344.1| (TSA: Calanus finmarchicus comp1633361_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.244e+0
Identity = 25/70 (35.71%), Postives = 32/70 (45.71%), Query Frame = 0
Query:   18 VSGSRMFFVSGQSQMLRIPPVKLTKPYTPIGNAGCILSNEPTIGDKILPKRAATVAKLRAVVRSTVGKSS 87
            VSG  +  VSG+ + +  PP + T P T +G AG       T G  I P R        AV  + VG SS
Sbjct: 1412 VSGRFVPCVSGRIRNIIRPPARDTTPITIMGRAGETRDRR*T*GASIPPTRPHIEDTPMAVFLTEVGNSS 1621          
BLAST of EMLSAG00000000802 vs. C. finmarchicus
Match: gi|592769134|gb|GAXK01185434.1| (TSA: Calanus finmarchicus comp321731_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.792e+0
Identity = 11/48 (22.92%), Postives = 26/48 (54.17%), Query Frame = 0
Query:   44 YTPIGNAGCILSNEPTIGDKILPKRAATVAKLRAVVRSTVGKSSLQKI 91
            Y+P+ + GC+  N  ++   + PKR        ++ R+T  +S+++ +
Sbjct:  622 YSPLTHKGCMYDNCNSLRPAVAPKRLQFSENYASLRRATHNQSAMENV 765          
BLAST of EMLSAG00000000802 vs. C. finmarchicus
Match: gi|592923672|gb|GAXK01034743.1| (TSA: Calanus finmarchicus comp111406_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.310e+0
Identity = 27/71 (38.03%), Postives = 32/71 (45.07%), Query Frame = 0
Query:   18 VSGSRMFFVSGQSQMLRIPPVKLTKPYTPIGNAGCIL-SNEPTIGDKILPKRAATVAKLRAVVRSTVGKSS 87
            VSGS +FFVSG     R P      P    G AG +  S+ P  G  +LP RA   A       +TVG  S
Sbjct: 1174 VSGSLVFFVSGSRSTTR-PANTDVTPKMITGAAGLLRPSSLPM*GAMMLPTRAHMEADPTPTFLTTVGNIS 1383          
BLAST of EMLSAG00000000802 vs. C. finmarchicus
Match: gi|592923673|gb|GAXK01034742.1| (TSA: Calanus finmarchicus comp111406_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.313e+0
Identity = 27/71 (38.03%), Postives = 32/71 (45.07%), Query Frame = 0
Query:   18 VSGSRMFFVSGQSQMLRIPPVKLTKPYTPIGNAGCIL-SNEPTIGDKILPKRAATVAKLRAVVRSTVGKSS 87
            VSGS +FFVSG     R P      P    G AG +  S+ P  G  +LP RA   A       +TVG  S
Sbjct: 1174 VSGSLVFFVSGSRSTTR-PANTDVTPKMITGAAGLLRPSSLPM*GAMMLPTRAHMEADPTPTFLTTVGNIS 1383          
BLAST of EMLSAG00000000802 vs. C. finmarchicus
Match: gi|592810119|gb|GAXK01144449.1| (TSA: Calanus finmarchicus comp366465_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 4.570e+0
Identity = 23/70 (32.86%), Postives = 35/70 (50.00%), Query Frame = 0
Query:   18 VSGSRMFFVSGQSQMLRIPPVKLTKPYTPIGNAGCILSNEPTIGDKILPKRAATVAKLRAVVRSTVGKSS 87
            VSGS +FFVSG+++      +++T       +A  + S+ P  G    P  A    + R   R+TVGK S
Sbjct:  167 VSGSAIFFVSGRNRTKMAAMIEVTPNMMSGASALFLASSLPM*GAITPPTLAHVEEEPRPTFRTTVGKIS 376          
BLAST of EMLSAG00000000802 vs. C. finmarchicus
Match: gi|592810118|gb|GAXK01144450.1| (TSA: Calanus finmarchicus comp366465_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.053e+0
Identity = 25/75 (33.33%), Postives = 37/75 (49.33%), Query Frame = 0
Query:   13 SHSPNVSGSRMFFVSGQSQMLRIPPVKLTKPYTPIGNAGCILSNEPTIGDKILPKRAATVAKLRAVVRSTVGKSS 87
            S S  VSGS +FFVSG+++      +++T       +A  + S+ P  G    P  A    + R   R+TVGK S
Sbjct:   64 SPSSMVSGSAIFFVSGRNRTKMAAMIEVTPNMMSGASALFLASSLPM*GAITPPTLAQVEEEPRPTFRTTVGKIS 288          
BLAST of EMLSAG00000000802 vs. L. salmonis peptides
Match: EMLSAP00000000802 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:166515:166895:-1 gene:EMLSAG00000000802 transcript:EMLSAT00000000802 description:"maker-LSalAtl2s1136-snap-gene-1.92")

HSP 1 Score: 184.496 bits (467), Expect = 1.510e-61
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query:    1 MMKNGLVVDAAASHSPNVSGSRMFFVSGQSQMLRIPPVKLTKPYTPIGNAGCILSNEPTIGDKILPKRAATVAKLRAVVRSTVGKSSLQKI 91
            MMKNGLVVDAAASHSPNVSGSRMFFVSGQSQMLRIPPVKLTKPYTPIGNAGCILSNEPTIGDKILPKRAATVAKLRAVVRSTVGKSSLQKI
Sbjct:    1 MMKNGLVVDAAASHSPNVSGSRMFFVSGQSQMLRIPPVKLTKPYTPIGNAGCILSNEPTIGDKILPKRAATVAKLRAVVRSTVGKSSLQKI 91          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000802 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000802 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592871120|gb|GAXK01086442.1|4.186e-643.53TSA: Calanus finmarchicus comp479109_c0_seq1 trans... [more]
gi|592805408|gb|GAXK01149160.1|8.804e-541.67TSA: Calanus finmarchicus comp96011_c0_seq1 transc... [more]
gi|592754121|gb|GAXK01200292.1|5.383e-441.67TSA: Calanus finmarchicus comp307940_c0_seq1 trans... [more]
gi|592751853|gb|GAXK01202560.1|2.827e-135.14TSA: Calanus finmarchicus comp6536121_c0_seq1 tran... [more]
gi|592774224|gb|GAXK01180344.1|3.244e+035.71TSA: Calanus finmarchicus comp1633361_c0_seq1 tran... [more]
gi|592769134|gb|GAXK01185434.1|3.792e+022.92TSA: Calanus finmarchicus comp321731_c0_seq1 trans... [more]
gi|592923672|gb|GAXK01034743.1|4.310e+038.03TSA: Calanus finmarchicus comp111406_c0_seq2 trans... [more]
gi|592923673|gb|GAXK01034742.1|4.313e+038.03TSA: Calanus finmarchicus comp111406_c0_seq1 trans... [more]
gi|592810119|gb|GAXK01144449.1|4.570e+032.86TSA: Calanus finmarchicus comp366465_c0_seq1 trans... [more]
gi|592810118|gb|GAXK01144450.1|5.053e+033.33TSA: Calanus finmarchicus comp366465_c1_seq1 trans... [more]

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BLAST of EMLSAG00000000802 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008021.510e-61100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:1665... [more]
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BLAST of EMLSAG00000000802 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000802 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000802 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000802 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1136supercontigLSalAtl2s1136:166515..166895 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1136-snap-gene-1.92
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000802 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000802EMLSAT00000000802-696649Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1136:166515..166895-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000802-683568 ID=EMLSAG00000000802-683568|Name=EMLSAG00000000802|organism=Lepeophtheirus salmonis|type=gene|length=381bp|location=Sequence derived from alignment at LSalAtl2s1136:166515..166895- (Lepeophtheirus salmonis)
ATGATGAAAAATGTTAATAAAATACTTTAAATCAAATTATATTCGAACAA TGCCTGGAATTTGACATCATTTCAATCTTCAGAAGGTTGATGANCTTTTG AACATTTTTTGCACCAGGGATTAGTTGTTGATGCTGCAGCCTCACATTCT CCCAATGTATCCGGAAGTCGTATGTTTTTTGTCTCTGGCCAAAGCCAAAT GCTCAGGATCCCTCCAGTCAAACTAACTAAGCCATATACACCTATAGGCA ATGCCGGATGTATCCTGTCCAATGAACCAACAATCGGGGACAAAATACTC CCTAAACGTGCGGCGACGGTTGCAAAGCTGAGAGCTGTCGTTCGAAGTAC AGTTGGAAAAAGTTCTTTACAGAAAATATAA
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