EMLSAG00000000804, EMLSAG00000000804-683570 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000804
Unique NameEMLSAG00000000804-683570
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000804 vs. C. finmarchicus
Match: gi|592804073|gb|GAXK01150495.1| (TSA: Calanus finmarchicus comp154323_c1_seq9 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 3.793e-2
Identity = 21/71 (29.58%), Postives = 36/71 (50.70%), Query Frame = 0 
Query:  460 IATAMVAILNSSQHFGRILDGIY-GSIIRGNHLTRGRRDIYRRDFDTLVRDRIKPRILPDLYSIHFIPVHD 529
            +A  +   LN+ +  G +  G+    ++RG  L R  RD  R+  D ++   I PR+ P++  I F+ V D
Sbjct:  912 LAVLICGFLNT-KAGGTLYAGVKRNGLVRGIPLERKDRDTMRQMLDRVLASMINPRVPPNVVDIDFVTVED 1121
[Close]
BLAST of EMLSAG00000000804 vs. C. finmarchicus
Match: gi|592804072|gb|GAXK01150496.1| (TSA: Calanus finmarchicus comp154323_c1_seq10 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 4.164e-2
Identity = 21/71 (29.58%), Postives = 36/71 (50.70%), Query Frame = 0 
Query:  460 IATAMVAILNSSQHFGRILDGIY-GSIIRGNHLTRGRRDIYRRDFDTLVRDRIKPRILPDLYSIHFIPVHD 529
            +A  +   LN+ +  G +  G+    ++RG  L R  RD  R+  D ++   I PR+ P++  I F+ V D
Sbjct:  870 LAVLICGFLNT-KAGGTLYAGVKRNGLVRGIPLERKDRDTMRQMLDRVLASMINPRVPPNVVDIDFVTVED 1079
[Close]
BLAST of EMLSAG00000000804 vs. C. finmarchicus
Match: gi|592804078|gb|GAXK01150490.1| (TSA: Calanus finmarchicus comp154323_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 4.490e-2
Identity = 21/71 (29.58%), Postives = 36/71 (50.70%), Query Frame = 0 
Query:  460 IATAMVAILNSSQHFGRILDGIY-GSIIRGNHLTRGRRDIYRRDFDTLVRDRIKPRILPDLYSIHFIPVHD 529
            +A  +   LN+ +  G +  G+    ++RG  L R  RD  R+  D ++   I PR+ P++  I F+ V D
Sbjct: 2493 LAVLICGFLNT-KAGGTLYAGVKRNGLVRGIPLERKDRDTMRQMLDRVLASMINPRVPPNVVDIDFVTVED 2702
[Close]
BLAST of EMLSAG00000000804 vs. C. finmarchicus
Match: gi|592804081|gb|GAXK01150487.1| (TSA: Calanus finmarchicus comp154323_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 4.641e-2
Identity = 21/71 (29.58%), Postives = 36/71 (50.70%), Query Frame = 0 
Query:  460 IATAMVAILNSSQHFGRILDGIY-GSIIRGNHLTRGRRDIYRRDFDTLVRDRIKPRILPDLYSIHFIPVHD 529
            +A  +   LN+ +  G +  G+    ++RG  L R  RD  R+  D ++   I PR+ P++  I F+ V D
Sbjct: 3383 LAVLICGFLNT-KAGGTLYAGVKRNGLVRGIPLERKDRDTMRQMLDRVLASMINPRVPPNVVDIDFVTVED 3592
[Close]
BLAST of EMLSAG00000000804 vs. C. finmarchicus
Match: gi|592804077|gb|GAXK01150491.1| (TSA: Calanus finmarchicus comp154323_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 4.965e-2
Identity = 21/71 (29.58%), Postives = 36/71 (50.70%), Query Frame = 0 
Query:  460 IATAMVAILNSSQHFGRILDGIY-GSIIRGNHLTRGRRDIYRRDFDTLVRDRIKPRILPDLYSIHFIPVHD 529
            +A  +   LN+ +  G +  G+    ++RG  L R  RD  R+  D ++   I PR+ P++  I F+ V D
Sbjct: 2451 LAVLICGFLNT-KAGGTLYAGVKRNGLVRGIPLERKDRDTMRQMLDRVLASMINPRVPPNVVDIDFVTVED 2660
[Close]
BLAST of EMLSAG00000000804 vs. C. finmarchicus
Match: gi|592804080|gb|GAXK01150488.1| (TSA: Calanus finmarchicus comp154323_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 5.135e-2
Identity = 21/71 (29.58%), Postives = 36/71 (50.70%), Query Frame = 0 
Query:  460 IATAMVAILNSSQHFGRILDGIY-GSIIRGNHLTRGRRDIYRRDFDTLVRDRIKPRILPDLYSIHFIPVHD 529
            +A  +   LN+ +  G +  G+    ++RG  L R  RD  R+  D ++   I PR+ P++  I F+ V D
Sbjct: 3341 LAVLICGFLNT-KAGGTLYAGVKRNGLVRGIPLERKDRDTMRQMLDRVLASMINPRVPPNVVDIDFVTVED 3550
[Close]
BLAST of EMLSAG00000000804 vs. L. salmonis peptides
Match: EMLSAP00000000804 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:166997:168983:-1 gene:EMLSAG00000000804 transcript:EMLSAT00000000804 description:"maker-LSalAtl2s1136-augustus-gene-1.65")

HSP 1 Score: 1176.39 bits (3042), Expect = 0.000e+0
Identity = 574/574 (100.00%), Postives = 574/574 (100.00%), Query Frame = 0 
Query:    1 MYDGSDAKKLNLRGQDLIAHRLRERLKEIERREEEEEDNRSNSSFISQERRGKDSFESFATANEEEGDLLDNMRNRQESRTKHPHTGRGRGYHSKKVNENTPEPMSLSRSFRKDELPRRRNEKWRDGNRTSMYGTHPSSSDECQSSHSSIEQNLSRGRGRGTPMIMKSLNDCKFLTKQYKSSESFSSADIQNHSSVNFVENQPIIKSSKINYSTSSTDEFDTSTRFSSRKPQIRSPQIQNNLINKPTKSNLYDDFFSSEDERSDPPSDKGASQAMKDFDDFFPSSDEEVLPRCHEKSESKKTELISVHKSNSLGCELGNFFPSEDESSNSSESEVKPSSLLETQESKVVVIPCRGHVFRSFNLKNNVEKETYFTLDEQEKMSKRIAKNKSRKSEKISTEGSDSQFEDLTAEARNITEGTYIKKNRDYLPYAEEISYLNFGELFQGKDSILLEGRNSFGGIATAMVAILNSSQHFGRILDGIYGSIIRGNHLTRGRRDIYRRDFDTLVRDRIKPRILPDLYSIHFIPVHDGGLIKENFYVVEIFVDKGVFTDSKVLYEVEKQGIFIWKNNSIHKL 574
            MYDGSDAKKLNLRGQDLIAHRLRERLKEIERREEEEEDNRSNSSFISQERRGKDSFESFATANEEEGDLLDNMRNRQESRTKHPHTGRGRGYHSKKVNENTPEPMSLSRSFRKDELPRRRNEKWRDGNRTSMYGTHPSSSDECQSSHSSIEQNLSRGRGRGTPMIMKSLNDCKFLTKQYKSSESFSSADIQNHSSVNFVENQPIIKSSKINYSTSSTDEFDTSTRFSSRKPQIRSPQIQNNLINKPTKSNLYDDFFSSEDERSDPPSDKGASQAMKDFDDFFPSSDEEVLPRCHEKSESKKTELISVHKSNSLGCELGNFFPSEDESSNSSESEVKPSSLLETQESKVVVIPCRGHVFRSFNLKNNVEKETYFTLDEQEKMSKRIAKNKSRKSEKISTEGSDSQFEDLTAEARNITEGTYIKKNRDYLPYAEEISYLNFGELFQGKDSILLEGRNSFGGIATAMVAILNSSQHFGRILDGIYGSIIRGNHLTRGRRDIYRRDFDTLVRDRIKPRILPDLYSIHFIPVHDGGLIKENFYVVEIFVDKGVFTDSKVLYEVEKQGIFIWKNNSIHKL
Sbjct:    1 MYDGSDAKKLNLRGQDLIAHRLRERLKEIERREEEEEDNRSNSSFISQERRGKDSFESFATANEEEGDLLDNMRNRQESRTKHPHTGRGRGYHSKKVNENTPEPMSLSRSFRKDELPRRRNEKWRDGNRTSMYGTHPSSSDECQSSHSSIEQNLSRGRGRGTPMIMKSLNDCKFLTKQYKSSESFSSADIQNHSSVNFVENQPIIKSSKINYSTSSTDEFDTSTRFSSRKPQIRSPQIQNNLINKPTKSNLYDDFFSSEDERSDPPSDKGASQAMKDFDDFFPSSDEEVLPRCHEKSESKKTELISVHKSNSLGCELGNFFPSEDESSNSSESEVKPSSLLETQESKVVVIPCRGHVFRSFNLKNNVEKETYFTLDEQEKMSKRIAKNKSRKSEKISTEGSDSQFEDLTAEARNITEGTYIKKNRDYLPYAEEISYLNFGELFQGKDSILLEGRNSFGGIATAMVAILNSSQHFGRILDGIYGSIIRGNHLTRGRRDIYRRDFDTLVRDRIKPRILPDLYSIHFIPVHDGGLIKENFYVVEIFVDKGVFTDSKVLYEVEKQGIFIWKNNSIHKL 574
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000804 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000804 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592804073|gb|GAXK01150495.1|3.793e-229.58TSA: Calanus finmarchicus comp154323_c1_seq9 trans... [more]
gi|592804072|gb|GAXK01150496.1|4.164e-229.58TSA: Calanus finmarchicus comp154323_c1_seq10 tran... [more]
gi|592804078|gb|GAXK01150490.1|4.490e-229.58TSA: Calanus finmarchicus comp154323_c1_seq4 trans... [more]
gi|592804081|gb|GAXK01150487.1|4.641e-229.58TSA: Calanus finmarchicus comp154323_c1_seq1 trans... [more]
gi|592804077|gb|GAXK01150491.1|4.965e-229.58TSA: Calanus finmarchicus comp154323_c1_seq5 trans... [more]
gi|592804080|gb|GAXK01150488.1|5.135e-229.58TSA: Calanus finmarchicus comp154323_c1_seq2 trans... [more]
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BLAST of EMLSAG00000000804 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008040.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:1669... [more]
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BLAST of EMLSAG00000000804 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000804 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000804 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000804 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1136supercontigLSalAtl2s1136:166997..168983 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1136-augustus-gene-1.65
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000804 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000804EMLSAT00000000804-696651Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1136:166997..168983-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000804-683570 ID=EMLSAG00000000804-683570|Name=EMLSAG00000000804|organism=Lepeophtheirus salmonis|type=gene|length=1987bp|location=Sequence derived from alignment at LSalAtl2s1136:166997..168983- (Lepeophtheirus salmonis)
ATGTACGATGGAAGTGATGCAAAGAAATTGAATCTCCGTGGACAGGACCT
GATTGCTCATAGATTAAGAGAGCGTTTAAAAGAAATTGAACGGAGGGAAG
AAGAAGAAGAAGACAATCGGAGTAATTCCTCATTTATCTCTCAAGAAAGA
AGAGGAAAGGATTCATTTGAATCCTTTGCCACTGCCAACGAAGAGGAAGG
AGATCTTTTAGATAATATGAGGAATAGACAGGAGAGTCGTACTAAGCATC
CACATACTGGTCGTGGAAGGGGATATCATTCAAAAAAGGTGAATGAAAAC
ACCCCTGAGCCCATGTCTCTTTCCAGGTCCTTTCGGAAGGATGAACTGCC
TAGGTATAATAATAAAACCTCAAACAAAGTGTCTTCTATACTTAAATAAT
GATGAAATAAAATATTAAATTTATCAATGCTTATATTGAATTGACAAAAT
AATAATTATATTAATCATTTTTCTGGGGGAAAATATTTAGGAGGAGAAAT
GAAAAGTGGAGAGATGGGAATCGTACTTCTATGTATGGAACTCACCCCTC
CTCCTCAGATGAATGCCAATCCAGCCACTCTTCCATAGAACAGAACTTAT
CACGTGGAAGAGGTCGAGGTACACCAATGATCATGAAATCCTTGAATGAT
TGCAAATTTTTAACTAAACAGTACAAATCCAGTGAGTCTTTCTCATCTGC
AGATATTCAAAATCACTCTTCAGTTAATTTTGTTGAGAACCAACCTATAA
TTAAATCCTCTAAAATTAATTATTCTACTTCATCAACGGATGAATTTGAT
ACGAGTACCAGATTTTCCTCTCGTAAGCCCCAAATAAGATCCCCTCAGAT
CCAAAATAATTTGATAAACAAACCTACGAAAAGTAATTTATACGATGATT
TTTTCTCCTCTGAGGATGAGAGATCCGATCCTCCTTCTGACAAAGGGGCA
TCTCAAGCCATGAAGGATTTTGACGATTTTTTTCCATCATCTGATGAAGA
GGTTCTTCCTAGGTGTCATGAAAAAAGTGAATCTAAAAAGACTGAATTAA
TTTCTGTTCATAAGTCTAATTCTTTAGGATGTGAATTAGGCAATTTTTTC
CCTTCTGAGGATGAAAGCTCAAATTCGAGCGAATCAGAAGTAAAGCCTTC
TTCCCTGTTAGAGACCCAGGAGTCAAAAGTAGTCGTAATTCCTTGTCGTG
GACATGTTTTTAGATCCTTTAATTTAAAAAATAACGTCGAAAAAGAAACT
TACTTCACTCTCGATGAGCAAGAGAAAATGTCAAAGAGGATTGCAAAGAA
TAAGAGTCGTAAAAGCGAAAAGATATCCACTGAAGGCTCGGATTCTCAAT
TTGAAGACCTAACAGCTGAGGCTAGAAACATCACTGAAGGAACTTACATT
AAAAAAAATCGAGACTATCTGCCTTACGCCGAAGAAATCAGTTATTTAAA
TTTTGGAGAATTATTTCAGGGTAAAGATAGTATTTTATTGGAGGGTCGGA
ATAGTTTTGGTGGGATTGCAACGGCTATGGTTGCTATTTTGAACTCTAGT
CAGCACTTTGGCCGTATATTGGATGGGATATATGGTTCTATAATTCGAGG
AAATCATTTAACTAGAGGAAGAAGAGACATTTACCGAAGGGATTTCGACA
CTCTTGTCAGAGATAGAATTAAACCTCGAATATTGCCAGGTTATTAAAAT
GTATTTGTAATTATGAATTATATTATCTAATGATTCTCAAATACTTAGAT
CTATATTCCATTCACTTTATACCTGTCCATGATGGAGGATTAATCAAGGA
AAACTTTTATGTTGTTGAGATATTTGTTGACAAAGGAGTGTTCACAGATA
GTAAAGTATGTAATTTGTTTCAAAATCTATAACTTATGATGTATTCTCAC
TATCTTTCTTTTTTGTACTAGGTTTTATATGAAGTTGAGAAACAGGGAAT
TTTTATCTGGAAAAATAACAGTATTCATAAATTATAA
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