EMLSAG00000000819, EMLSAG00000000819-683585 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000819
Unique NameEMLSAG00000000819-683585
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592818295|gb|GAXK01136273.1| (TSA: Calanus finmarchicus comp619796_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.171e+0
Identity = 15/35 (42.86%), Postives = 22/35 (62.86%), Query Frame = 0 
Query:    1 PTKVYQYNKPSLLWSIFGFPSVSTVLTNIALLYCG 35
            PT+      PSLL S F +PS+ T+LT+I ++  G
Sbjct:  553 PTEDSSPTSPSLLASRFSWPSLGTILTSIVVIRSG 657
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BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592945155|gb|GAXK01013398.1| (TSA: Calanus finmarchicus comp8814_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.428e+0
Identity = 17/63 (26.98%), Postives = 30/63 (47.62%), Query Frame = 0 
Query:   84 LIGLFIGVGNLVILCWGTFVLFG-----YGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVL 141
            L  + I +   VI  WG+ V+FG        +E++  +  +  YC + P++ A   L+  W L
Sbjct: 1612 LSNVIISIATSVICIWGSTVVFGAWASWTDNYEEYAADVENKNYCAYEPMMFAFVYLVCQWSL 1800
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BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592945156|gb|GAXK01013397.1| (TSA: Calanus finmarchicus comp8814_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.428e+0
Identity = 17/63 (26.98%), Postives = 30/63 (47.62%), Query Frame = 0 
Query:   84 LIGLFIGVGNLVILCWGTFVLFG-----YGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVL 141
            L  + I +   VI  WG+ V+FG        +E++  +  +  YC + P++ A   L+  W L
Sbjct:  198 LSNVIISIATSVICIWGSTVVFGAWASWTDNYEEYAADVENKNYCAYEPMMFAFVYLVCQWSL 386
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BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592768638|gb|GAXK01185930.1| (TSA: Calanus finmarchicus comp44153_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.473e+0
Identity = 17/57 (29.82%), Postives = 27/57 (47.37%), Query Frame = 0 
Query:   78 SLRDGDLIGLFIGVGNLVILCWGTFVLFGYGKFEKWNLEKSDPYYCDHAPVVIALAN 134
             L+ G  IG  +    + + C  TFV  G   F KW L +   + CD A V++ ++ 
Sbjct: 3734 ELQSGMSIG*ALPNTKIDLKCKATFVFPGLIPFFKWKLRRHCKHMCDCASVLVCISE 3904
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BLAST of EMLSAG00000000819 vs. C. finmarchicus
Match: gi|592875639|gb|GAXK01081938.1| (TSA: Calanus finmarchicus comp112270_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 6.705e+0
Identity = 17/54 (31.48%), Postives = 26/54 (48.15%), Query Frame = 0 
Query:   97 LCWGTFVLFG-----YGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIPLF 145
            L WG+ V+FG         E++  +  +  YC   P++ A   LI  W L+ LF
Sbjct:    2 LIWGSVVVFGAWASWTNNNEEYAADVENKNYCADEPMMYAFVILIVKWALMLLF 163
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BLAST of EMLSAG00000000819 vs. L. salmonis peptides
Match: EMLSAP00000000819 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:40099:40823:-1 gene:EMLSAG00000000819 transcript:EMLSAT00000000819 description:"maker-LSalAtl2s1136-augustus-gene-1.61")

HSP 1 Score: 393.66 bits (1010), Expect = 8.646e-141
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 
Query:    1 PTKVYQYNKPSLLWSIFGFPSVSTVLTNIALLYCGVSYFMETSDCRFNLIPLYLIISNSLFLATSIFRIICLHDAVRSLRDGDLIGLFIGVGNLVILCWGTFVLFGYGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIPLFVFVELYKLFRACTMRMSKSNNNPVQKRQSRIQPNGFHNASLKLNGIV 192
            PTKVYQYNKPSLLWSIFGFPSVSTVLTNIALLYCGVSYFMETSDCRFNLIPLYLIISNSLFLATSIFRIICLHDAVRSLRDGDLIGLFIGVGNLVILCWGTFVLFGYGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIPLFVFVELYKLFRACTMRMSKSNNNPVQKRQSRIQPNGFHNASLKLNGIV
Sbjct:    1 PTKVYQYNKPSLLWSIFGFPSVSTVLTNIALLYCGVSYFMETSDCRFNLIPLYLIISNSLFLATSIFRIICLHDAVRSLRDGDLIGLFIGVGNLVILCWGTFVLFGYGKFEKWNLEKSDPYYCDHAPVVIALANLIAAWVLIPLFVFVELYKLFRACTMRMSKSNNNPVQKRQSRIQPNGFHNASLKLNGIV 192
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000819 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000819 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592818295|gb|GAXK01136273.1|2.171e+042.86TSA: Calanus finmarchicus comp619796_c1_seq1 trans... [more]
gi|592945155|gb|GAXK01013398.1|3.428e+026.98TSA: Calanus finmarchicus comp8814_c3_seq1 transcr... [more]
gi|592945156|gb|GAXK01013397.1|3.428e+026.98TSA: Calanus finmarchicus comp8814_c1_seq1 transcr... [more]
gi|592768638|gb|GAXK01185930.1|3.473e+029.82TSA: Calanus finmarchicus comp44153_c0_seq1 transc... [more]
gi|592875639|gb|GAXK01081938.1|6.705e+031.48TSA: Calanus finmarchicus comp112270_c0_seq2 trans... [more]

Pages

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BLAST of EMLSAG00000000819 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008198.646e-141100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1136:4009... [more]
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BLAST of EMLSAG00000000819 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000819 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000819 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000819 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1136supercontigLSalAtl2s1136:40099..40823 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1136-augustus-gene-1.61
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000819 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000819EMLSAT00000000819-696666Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1136:40099..40823-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000819-683585 ID=EMLSAG00000000819-683585|Name=EMLSAG00000000819|organism=Lepeophtheirus salmonis|type=gene|length=725bp|location=Sequence derived from alignment at LSalAtl2s1136:40099..40823- (Lepeophtheirus salmonis)
CCTACCAAAGTATATCAGTACAATAAGCCCTCACTCTTATGGTCCATTTT
TGGATTTCCGAGTGTGTCAACGGTCCTGACAAATATTGCTCTTCTCTACT
GTGGCGTCAGTTATTTTATGGAAACATCAGACTGTCGGTTCAACCTCATT
CCTTTGTACCTCATCATTAGTAACTCCTTGTTCCTTGCCACCTCCATTTT
TCGAATCATTTGTCTTCATGATGCTGTCAGGTAAATATTGGGTTGTTATT
TACAAACTAAGATTGTACTCACATAACTAAGTTTAAATTCTACTTTTTGT
ATTCTACATACAACTCAGATCTCTACGAGACGGGGATCTGATTGGACTAT
TTATAGGAGTTGGAAATCTCGTCATTCTATGTTGGGGAACATTTGTTTTA
TTTGGCTACGGTATGTACCATTTCTTTATTTAAGATTGATACAGAGTAAT
TACAGAATATTTTTACAGGGAAGTTTGAAAAGTGGAATTTGGAGAAGAGC
GATCCTTATTACTGTGATCATGCTCCGGTTGTGATTGCTCTTGCAAATCT
AATCGCCGCTTGGGTACTCATTCCTCTCTTTGTCTTCGTTGAGCTCTACA
AACTATTCAGGGCCTGTACCATGAGAATGAGTAAATCAAATAATAATCCT
GTACAAAAAAGACAGAGTCGGATTCAGCCAAATGGTTTTCATAATGCCTC
TCTCAAATTAAACGGCATCGTTTAA
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