EMLSAG00000000826, EMLSAG00000000826-683592 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000826
Unique NameEMLSAG00000000826-683592
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000826 vs. C. finmarchicus
Match: gi|592765811|gb|GAXK01188757.1| (TSA: Calanus finmarchicus comp326014_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 3.228e-3
Identity = 56/186 (30.11%), Postives = 82/186 (44.09%), Query Frame = 0 
Query:  210 QQSITHRRKDLCKLLGL---------SEDTASSKQRFKEVQKLAIKHLNAHSNSSNQSTPRK-KKNLAKFLGVTENSDMDE------------PIPFEEFKLRVQEKRRRDSP--SRSSFIRNLFKTSSINSLNRDGSIGSSGRE--PLDYTLLQQDGKNRKDLTKFLGLNDSDSEEIIFIQNKKR 369
            QQ I  +RKDL KLLGL         SE+  + K   +     A K+ N    +S    P++ +KNLAKFLG+  ++  D+            P+  E   +          P  +R    R L     I S +R  S   +  E  P      +    NRKDL +FLGLN  D EE+++I+N ++
Sbjct: 1156 QQLIPVKRKDLFKLLGLNESSHIVDPSEEADAKKVALQNFLSTADKNDNTSKKNSILLAPKQGRKNLAKFLGIDMSALADDEALVHSGIERSMPLDCESVSISSSTASSGKKPNGARQILGRAL---PGIRSHSRGASCEKTPMEDIPEQLRTPKVPQANRKDLQRFLGLN--DCEEMVYIRNVRK 1698
[Close]
BLAST of EMLSAG00000000826 vs. C. finmarchicus
Match: gi|592765812|gb|GAXK01188756.1| (TSA: Calanus finmarchicus comp326014_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 3.260e-3
Identity = 56/186 (30.11%), Postives = 82/186 (44.09%), Query Frame = 0 
Query:  210 QQSITHRRKDLCKLLGL---------SEDTASSKQRFKEVQKLAIKHLNAHSNSSNQSTPRK-KKNLAKFLGVTENSDMDE------------PIPFEEFKLRVQEKRRRDSP--SRSSFIRNLFKTSSINSLNRDGSIGSSGRE--PLDYTLLQQDGKNRKDLTKFLGLNDSDSEEIIFIQNKKR 369
            QQ I  +RKDL KLLGL         SE+  + K   +     A K+ N    +S    P++ +KNLAKFLG+  ++  D+            P+  E   +          P  +R    R L     I S +R  S   +  E  P      +    NRKDL +FLGLN  D EE+++I+N ++
Sbjct: 1298 QQLIPVKRKDLFKLLGLNESSHIVDPSEEADAKKVALQNFLSTADKNDNTSKKNSILLAPKQGRKNLAKFLGIDMSALADDEALVHSGIERSMPLDCESVSISSSTASSGKKPNGARQILGRAL---PGIRSHSRGASCEKTPMEDIPEQLRTPKVPQANRKDLQRFLGLN--DCEEMVYIRNVRK 1840
[Close]
BLAST of EMLSAG00000000826 vs. L. salmonis peptides
Match: EMLSAP00000000826 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1138:41148:44126:-1 gene:EMLSAG00000000826 transcript:EMLSAT00000000826 description:"maker-LSalAtl2s1138-snap-gene-0.7")

HSP 1 Score: 1060.06 bits (2740), Expect = 0.000e+0
Identity = 527/527 (100.00%), Postives = 527/527 (100.00%), Query Frame = 0 
Query:    1 MQAALLSMEATPEGIFLLPPNGKRLLVRSLSDGAKYGSSIRKRLAAQQTANGNELYSMSESCLKESDFDVSDSSSTSSSCSCGCGDVPSLNEVEVDXSXDEDEGFAKDDYDEEVVGPKSVVYVDSAERRSFSSSVDSGRSSDRDGSLNKSYNTNKISVFVPYCEDLRHRESSSNNKTNITISSSQIQIKCSSEKEIRSLVPPDPSTFSLQQSITHRRKDLCKLLGLSEDTASSKQRFKEVQKLAIKHLNAHSNSSNQSTPRKKKNLAKFLGVTENSDMDEPIPFEEFKLRVQEKRRRDSPSRSSFIRNLFKTSSINSLNRDGSIGSSGREPLDYTLLQQDGKNRKDLTKFLGLNDSDSEEIIFIQNKKRNGLRKSSSWSSLNSSSYCSXRRTRRLKTPEIMRKSILQKRNGVSPLPCRKSVLFKEYDFSVEESIAKGQPIIPPNGERKKKKDAYRRSVEVSQRMSLEELLRDVSICEKLGKRRVKRRAMNQTPFMSYDPKGRIRIVPKNPPQYLFQKKQNCNTEIDK 527
            MQAALLSMEATPEGIFLLPPNGKRLLVRSLSDGAKYGSSIRKRLAAQQTANGNELYSMSESCLKESDFDVSDSSSTSSSCSCGCGDVPSLNEVEVDXSXDEDEGFAKDDYDEEVVGPKSVVYVDSAERRSFSSSVDSGRSSDRDGSLNKSYNTNKISVFVPYCEDLRHRESSSNNKTNITISSSQIQIKCSSEKEIRSLVPPDPSTFSLQQSITHRRKDLCKLLGLSEDTASSKQRFKEVQKLAIKHLNAHSNSSNQSTPRKKKNLAKFLGVTENSDMDEPIPFEEFKLRVQEKRRRDSPSRSSFIRNLFKTSSINSLNRDGSIGSSGREPLDYTLLQQDGKNRKDLTKFLGLNDSDSEEIIFIQNKKRNGLRKSSSWSSLNSSSYCSXRRTRRLKTPEIMRKSILQKRNGVSPLPCRKSVLFKEYDFSVEESIAKGQPIIPPNGERKKKKDAYRRSVEVSQRMSLEELLRDVSICEKLGKRRVKRRAMNQTPFMSYDPKGRIRIVPKNPPQYLFQKKQNCNTEIDK
Sbjct:    1 MQAALLSMEATPEGIFLLPPNGKRLLVRSLSDGAKYGSSIRKRLAAQQTANGNELYSMSESCLKESDFDVSDSSSTSSSCSCGCGDVPSLNEVEVDXSXDEDEGFAKDDYDEEVVGPKSVVYVDSAERRSFSSSVDSGRSSDRDGSLNKSYNTNKISVFVPYCEDLRHRESSSNNKTNITISSSQIQIKCSSEKEIRSLVPPDPSTFSLQQSITHRRKDLCKLLGLSEDTASSKQRFKEVQKLAIKHLNAHSNSSNQSTPRKKKNLAKFLGVTENSDMDEPIPFEEFKLRVQEKRRRDSPSRSSFIRNLFKTSSINSLNRDGSIGSSGREPLDYTLLQQDGKNRKDLTKFLGLNDSDSEEIIFIQNKKRNGLRKSSSWSSLNSSSYCSXRRTRRLKTPEIMRKSILQKRNGVSPLPCRKSVLFKEYDFSVEESIAKGQPIIPPNGERKKKKDAYRRSVEVSQRMSLEELLRDVSICEKLGKRRVKRRAMNQTPFMSYDPKGRIRIVPKNPPQYLFQKKQNCNTEIDK 527
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000826 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000826 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592765811|gb|GAXK01188757.1|3.228e-330.11TSA: Calanus finmarchicus comp326014_c0_seq2 trans... [more]
gi|592765812|gb|GAXK01188756.1|3.260e-330.11TSA: Calanus finmarchicus comp326014_c0_seq1 trans... [more]
back to top
BLAST of EMLSAG00000000826 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008260.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1138:4114... [more]
back to top
BLAST of EMLSAG00000000826 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000826 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000826 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000826 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1138supercontigLSalAtl2s1138:41148..44126 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1138-snap-gene-0.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000826 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000826EMLSAT00000000826-696673Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1138:41148..44126-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000826-683592 ID=EMLSAG00000000826-683592|Name=EMLSAG00000000826|organism=Lepeophtheirus salmonis|type=gene|length=2979bp|location=Sequence derived from alignment at LSalAtl2s1138:41148..44126- (Lepeophtheirus salmonis)
GGCCTTCTTCAAAATGCAGGCGGCACTCTTGAGTATGGAAGCAACTCCAG
AAGGTATTTTCCTTCTTCCCCCCAATGGAAAACGTCTTCTTGTACGTAGT
TTAAGTGATGGAGCAAAGTATGGTTCTTCAATTAGAAAAAGACTTGCGGC
TCAACAAACAGCGAATGGCAATGAGCTTTATTCTATGTCGGAATCATGTC
TGAAAGAGTCTGACTTTGATGTCTCAGATTCTTCCTCCACTTCTTCCTCT
TGTTCGTGCGGTTGTGGAGATGTTCCTAGTCTGAACGAAGTGGAAGTGGA
TARCTCGGRTGATGAGGATGAGGGTTTTGCAAAGGATGATTATGATGAGG
AAGTTGTGGGTCCAAAATCAGTTGTTTATGTGGACTCAGCAGAGAGAAGA
TCATTTTCTTCATCGGTGGACTCTGGAAGATCTTCGGATAGAGACGGAAG
TTTAAATAAAAGTTATAATACAAATAAAATTAGCGTTTTCGTACCGTATT
GTGAAGATTTGAGGCACAGGGAAAGTTCCTCGAATAATAAGACAAATATT
ACGATTTCTAGCTCACAAATTCAAATAAAATGTTCATCCGAGAAAGAAAT
ACGAAGCCTTGTTCCTCCTGATCCATCCACTTTCTCATTACAACAAAGCA
TAACACATCGTAGAAAGGATCTTTGTAAACTTCTTGGGCTCTCTGAGGAT
ACGGCATCATCCAAACAACGATTTAAGGAAGTTCAAAAATTGGCCATCAA
GCACTTAAATGCCCATTCCAACTCTAGTAATCAAAGTACCCCACGTAAGA
AAAAGAATTTAGCCAAATTCCTTGGAGTCACTGAGAATTCAGACATGGAT
GAGCCGATTCCTTTTGAAGAATTCAAACTACGAGTACAAGAAAAGAGAAG
GCGGGACTCTCCTTCGAGATCAAGTTTTATCCGTAACCTTTTCAAAACAT
CTTCTATTAATTCCCTCAATAGAGATGGCTCCATAGGAAGTTCAGGAAGA
GAACCTCTCGATTACACCCTACTTCAGCAAGACGGGAAGAACCGCAAAGA
TCTGACTAAATTCCTTGGATTAAATGACAGTGATAGTGAGGAAATTATAT
TTATTCAAAATAAAAAACGAAACGGCCTCCGGAAATCCTCATCCTGGTCC
TCCCTTAATTCATCCTCCTACTGCTCTCWACGACGGACACGACGCCTCAA
AACACCTGAAATCATGAGAAAGAGCATATTACAAAAAAGAAATGGAGTCT
CTCCATTACCTTGTCGTAAGTCTGTACTGTTCAAGGAGTATGACTTCAGT
GTAGAAGAATCTATTGCCAAAGGACAACCCATCATACCTCCGAACGGAGA
ACGAAAGAAGAAAAAAGACGCTTATCGTCGGTCCGTTGAAGTATCTCAGA
GAATGTCATTAGAAGAGCTTTTGAGGGATGTCTCCATCTGCGAAAAGTTG
GGCAAGCGAAGAGTGAAAAGAAGAGCCATGAATCAGACTCCTTTCATGAG
CTACGATCCAAAGGGACGTATTCGAATCGTTCCAAAGAATCCTCCTCAAT
ATCTTTTCCAGTTTATCCGAAAGAGCCCCTGCATCAAAGACTTCACTCAC
ATTCAAAGAACTATTGCAAAAAGATAGTGAAAAAGGAGGAAGGACTCTAT
ATGGACATACCTCAGATGAATAAAAAATTACTATGTATTGTGTCGTTCCC
TCTCGATTTTTATACTTTTATTCCCCTTATTGGCGTTCCGAATATCTATT
GGTTCGATACAAATTAGTTTTTGTTAAATAGCTGGGAAACAACTCCCAAC
AAAGTCTTCTTTTTTTCGTGTGTGAGTTTTATTGGAGGAGGAAAAGGCTG
CAAAGTAATATAAAGGTAACGATGTGACTTAAATTCCATTCTCTTACCTT
CAATACGTCATGAAGTTAGCAGCATTTCTCAGCATAAATATTTGGAATCA
ACTATTTTTTTTAATCAATGGATACCCTAAATATATCATGTATRCATAAA
CAAATATAAAAGAATACGTAAAACTATAGAAATGTTATTATTATGCCCCT
ATAGAACTTAACCAAGAAACSTGATCACCCCCCCCCCCCCAATATCCTCA
TTGTTCTTTTCTTATTATTATTGTAATAAGTGTTATTGAAATATATATAA
ATATATACATGTCTATTATCTATAAATACTTAGTTATGCATTTATTCGCT
TACATCACAGAGGCGTCCGTAGAATCATATATATATAAGGGAGGGGTCGG
GTTCTTTTTTTTTTTTTTGATTTTTTTTTCAAATTATGCTTTTGGGAAAT
AAAATTCAAAAGTTAAAATTTCAAAATATGGAATTTTTTGGAAAAAAGTT
TCAAAAATCCACAGTTGTTCACATTAAAATACATTTTGTGTAAAAAAAAA
CTGAAATATTAAATTTTTTGGGGAAAAAATTCAAAAATCTACAGCTATTC
AGATAAAAATTGCAAATATTAAACTTTTGAAGAAAATAAGTCAAAAATTA
AATTTCGAAAATTAGAATTTTGTAGAAAAAAATTTCAAAAATCCAAAGTT
GTTCACATTAAATTACATTTTGTGGAAAAAAAATTCAAATATTACCTTTT
CTGAGAAAAAAGTTTAAAAAATCTACAGTTATTCAGAAAAAAATTGCAAA
TATTAAACTTTTGGAAAAAATTTCAAAAATCCAAAGTTGTTCACATTAAA
TTACATTTTGTGGAAAAAAAAGAGAAATATTAAATTTTTTGCAAAAAAAA
ATTAAAAAGCTACAACGGACACTCCTGCATCATATACTCAAATTGTTTTT
TAAATACTTACATATGATMCTCACGTATCTTCTTCTTCCACTCAGTCAAT
CTAACTCGAACATCCCTGATAATGCGTCAGCACCATCTATTTTTCCCATA
TATTTGCCATTTTGCAATATACATGTTTATAAATTTATTTGCAAGAAAAA
AACAAAATTGCAATACGGAAATAGATAAA
back to top
Add to Basket