EMLSAG00000000827, EMLSAG00000000827-683593 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000827
Unique NameEMLSAG00000000827-683593
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000827 vs. C. finmarchicus
Match: gi|592890907|gb|GAXK01067468.1| (TSA: Calanus finmarchicus comp17269_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 55.0694 bits (131), Expect = 1.324e-7
Identity = 40/117 (34.19%), Postives = 60/117 (51.28%), Query Frame = 0 
Query:  245 NESLYDYQGRSTRSISD-VAQQLYALAEAFKKYEVEES--CQKYVACAA------RRNTESYALMTIVDDVMRSMLKSGHEKIREKDAYVGELLDAYLQGER-TSCQQHRNICYRKK 351
            +E    Y+ RS   I D    QL  LAEAF KYE++E+  CQ YVAC +      R+N     L   V   M+ + +  + ++ E D Y+ +++ A+  G    SCQQ R  C ++K
Sbjct:  644 DEEFNGYKKRSGAGIVDGFTDQLNLLAEAFHKYEIDETNGCQLYVACESSDIAMHRKNG---PLAKTVYHAMKKIAEPQNTRLYEDDKYLMDIMSAFKIGSSGQSCQQFRKQCRKEK 985
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BLAST of EMLSAG00000000827 vs. C. finmarchicus
Match: gi|592890908|gb|GAXK01067467.1| (TSA: Calanus finmarchicus comp17269_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 53.1434 bits (126), Expect = 7.085e-7
Identity = 36/108 (33.33%), Postives = 55/108 (50.93%), Query Frame = 0 
Query:  253 GRSTRSISDVAQQLYALAEAFKKYEVEES--CQKYVACAA------RRNTESYALMTIVDDVMRSMLKSGHEKIREKDAYVGELLDAYLQGER-TSCQQHRNICYRKK 351
             R+ R       QL  LAEAF KYE++E+  CQ YVAC +      R+N     L   V   M+ + +  + ++ E D Y+ +++ A+  G    SCQQ R  C ++K
Sbjct:  644 ARNKRYAEGFTDQLNLLAEAFHKYEIDETNGCQLYVACESSDIAMHRKNG---PLAKTVYHAMKKIAEPQNTRLYEDDKYLMDIMSAFKIGSSGQSCQQFRKQCRKEK 958
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BLAST of EMLSAG00000000827 vs. L. salmonis peptides
Match: EMLSAP00000000827 (pep:novel supercontig:LSalAtl2s:LSalAtl2s113:1073009:1077529:1 gene:EMLSAG00000000827 transcript:EMLSAT00000000827 description:"maker-LSalAtl2s113-augustus-gene-9.10")

HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0
Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0 
Query:    1 MILGINGNLKYHLNELKGSTKLLFIYKLMIKLIPALAFTFIIAISSTCVNAEYIDDVTSLENEPRIFDNLMNGTSTFSPSSILAVILVGILIALAFGPGLLNNTGAAYDRNYYQNNNQGYGQEYDGSAYVKTDRRSLDASIIMKYSLFIGFCLLALSTSYAYADPLDIVEDVDDMDEERTITTNNGNVLLSFNASNVLFYGAIIGIGLLGLVALAVIFSIPAFSEQSGYNNRYSNSQYNQYYDENESLYDYQGRSTRSISDVAQQLYALAEAFKKYEVEESCQKYVACAARRNTESYALMTIVDDVMRSMLKSGHEKIREKDAYVGELLDAYLQGERTSCQQHRNICYRKKFN 353
            MILGINGNLKYHLNELKGSTKLLFIYKLMIKLIPALAFTFIIAISSTCVNAEYIDDVTSLENEPRIFDNLMNGTSTFSPSSILAVILVGILIALAFGPGLLNNTGAAYDRNYYQNNNQGYGQEYDGSAYVKTDRRSLDASIIMKYSLFIGFCLLALSTSYAYADPLDIVEDVDDMDEERTITTNNGNVLLSFNASNVLFYGAIIGIGLLGLVALAVIFSIPAFSEQSGYNNRYSNSQYNQYYDENESLYDYQGRSTRSISDVAQQLYALAEAFKKYEVEESCQKYVACAARRNTESYALMTIVDDVMRSMLKSGHEKIREKDAYVGELLDAYLQGERTSCQQHRNICYRKKFN
Sbjct:    1 MILGINGNLKYHLNELKGSTKLLFIYKLMIKLIPALAFTFIIAISSTCVNAEYIDDVTSLENEPRIFDNLMNGTSTFSPSSILAVILVGILIALAFGPGLLNNTGAAYDRNYYQNNNQGYGQEYDGSAYVKTDRRSLDASIIMKYSLFIGFCLLALSTSYAYADPLDIVEDVDDMDEERTITTNNGNVLLSFNASNVLFYGAIIGIGLLGLVALAVIFSIPAFSEQSGYNNRYSNSQYNQYYDENESLYDYQGRSTRSISDVAQQLYALAEAFKKYEVEESCQKYVACAARRNTESYALMTIVDDVMRSMLKSGHEKIREKDAYVGELLDAYLQGERTSCQQHRNICYRKKFN 353
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BLAST of EMLSAG00000000827 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold72_size415059-snap-gene-3.19 (protein:Tk08677 transcript:maker-scaffold72_size415059-snap-gene-3.19-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_307693")

HSP 1 Score: 73.559 bits (179), Expect = 1.742e-15
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = 0 
Query:  253 GRSTRSI--SDVAQQLYALAEAFKKYEVEE-SCQKYVACAA---RRNTESYALMTIVDDVMRSMLKSGHEKIREKDAYVGELLDAY-------LQGERTSCQQHRNICY 348
             RS R +   D+A Q++ LAEAFKKYEV++  CQ YVAC A   +R+ E+  L  +V  +M+ + K G +++  KD YV  LL  +        QG+  +C Q R+ CY
Sbjct:   97 ARSDRRVYEEDLASQMFQLAEAFKKYEVKDVDCQTYVACEASQTQRHEENGILAKVVYGIMKKLNKFGLKQVERKDKYVASLLKMFQYGDESNRQGKEDACSQQRDKCY 205
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000827 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000827 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592890907|gb|GAXK01067468.1|1.324e-734.19TSA: Calanus finmarchicus comp17269_c0_seq2 transc... [more]
gi|592890908|gb|GAXK01067467.1|7.085e-733.33TSA: Calanus finmarchicus comp17269_c0_seq1 transc... [more]
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BLAST of EMLSAG00000000827 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000008270.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s113:10730... [more]
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BLAST of EMLSAG00000000827 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000827 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000827 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000827 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold72_size415059-snap-gene-3.191.742e-1539.45protein:Tk08677 transcript:maker-scaffold72_size41... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s113supercontigLSalAtl2s113:1073009..1077529 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s113-augustus-gene-9.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000827 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000827EMLSAT00000000827-696674Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s113:1073009..1077529+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000827-683593 ID=EMLSAG00000000827-683593|Name=EMLSAG00000000827|organism=Lepeophtheirus salmonis|type=gene|length=4521bp|location=Sequence derived from alignment at LSalAtl2s113:1073009..1077529+ (Lepeophtheirus salmonis)
ATGATATTAGGAATAAATGGGAACCTAAAATATCATCTTAATGAATTAAA
AGGTTCAACAAAACTACTTTTTATCTATAAGTTGTGATTCCATATCCACT
TTCTTTGTCATAAAACAGTTGAAGTCTATGAGATACAAATATAACTTTTG
TTTGTGAAAAAAAAAAAAAAATGGCCGTTWTGCTTSAAGTTTWTTTYTTY
TAATTAATACTTCCTTTCAGTAAGACAAATATATCTTGTACCTTGGAAAA
AAAGATTACATGATATATATGTGATTTTTTTAACTTCTATTTGAAACGAG
CAGTTACACAATTAGGGTCAATATGATTTATTTTATTTATTCGTTTTTTC
CTTATCGTTTTTGTTTTTTTTAATCAAAAGTTTCAGTTGTTTGTAAATCA
TTGAATATGCATACATCGAGAGAAATATTTGATTGTAATAAAAAGGGAAT
GATAGATTTTGGAAACAAGTTTATTTATTTGAAGTAAACAACTGGAAAAA
CTTGTTCTTTGGTTGTATCATCAAATGTGCATACATTTAGGGGAAGGGGG
GGAGGTGAAAAAAGGTTCCTATATAGATTTTTTTTAATTACCTATAATTA
GTAGCTGATAACTTAAGAACAAGTAATTTGATTCAAGAGGAAAACTGCAC
AATGTATACATTGATTGATTGTTCTAATATACCTTTGAATTAGTATAAAT
ACAAGATCCCTTATCCCATTTTTCTTTTAGAATGATCAAGTTAATCCCTG
CCTTGGCTTTCACTTTCATTATTGCTATCAGCTCAACCTGCGTCAATGCA
GAATATATCGATGATGTAACAAGTCTCGAAAATGAGCCCCGCATCTTTGA
CAATCTTATGAATGGAACATCAACTTTCTCTCCAAGCTCAATACTCGCTG
TTATCCTTGTTGGTATTCTCATTGCTCTTGCATTCGGTCCTGGTTTGCTG
AACAACACTGGTGCTGCATACGATCGGAACTACTATCAAAATAACAACCA
AGGCTATGGGCAGGAGTACGATGGATCTGCCTATGTCAAAACTGATCGGA
GAAGCCTTGATGGTAAATATGTTTAGAGATATATTTTTTTCATTCAAAAC
TTCCGAGTTATTATTTTGTAATTCACGGTACATCTATCCTTTATAATATC
ACTCAACCTAAAACAATGATTGCAATTTATTATTTTACTTAATCGTTTTT
ATATTTTTAGAACATCATATGTTGATTCTACATTAATTCATATTCATAGT
TTTTATCTAATTAATTAAAATACAACTTTAGCGTTTTTTTATAGCAATTA
GCTTTAATTTAAAAAAAAATCAACTACAAATGCCCTTAATAATATAATAG
CATATATAAATAGTTGTATATGAAAAACAACCAATTAAAGTATCCCTTAA
TTGTTTGGAGCAATGCGATTAATTCTTCAGTCAGAGTAAAAGTGAAAGTT
TGAATAATTAAAATCCAATTAAGTTAGGAGTTATTATAATAAAGAAAATT
CTTATAAAAATATAAATATATCCTATTTTTTTTTTTTACGATAGCGTCTT
ATTTGACGTTCCAGCTACACAACATTTTTAAGAACGGAACTTATTTATAT
CTTAAAAACACTGAACCTCTACCCCTATTTATTCAATTGAAATTAATACA
AAAGATAGATATTTTTTTACATGCTTTATGCAATATTTTTCAATGGTTCA
GTTCGTCATACTTTTTTTCTTTTAGCTGTAATGAAGTTGCTTTTTTTTCA
TTCATTATATTTTTGAGGGTCAAAATTTAACATAAAAAGACGAAGCAAAA
TAAATTTTTAGGAGGGAGTTATGACCTTAAACAGCTTTAATTAGTCAATT
CAAAAAGCTATAACTCTTAAAACATAATTTATAAATTATTGTACCTACTT
AAAAAAAAAAAGATACATTTCATTATTACCCCAACTTGAGAATAAATAGA
TGTCTCATCGGAAATTTTGTTCACGTTGTTACCTCTGTTTTATCCCGCAA
CCTTTCATTCAAAAAGAAAAAAGTCCCAAAAGGAATTAGCCAATTCTTCC
CAACTATAAGAAATATTACGTATTAAATGTTGGGAATTGATTACAGCTTA
ACAAAAAGAGTTAATTCGAATTCCACCTATCAGAAACGTTCAAAGCACTG
ATAAGTGGAATACAAAAAGACAACTGGAGAGCTTACAGCAAAAACTGCTT
ATATTTTATAGTGTTTTTACGCTCCTTGTATGGTTTGAGATGATTGAGGT
TATTATGCTCTAAGAGAAACTGTTAAATCCGAACGAATTCTAATTTCTTA
ATTCTTACAATTTATGAGAAATCTGTCAAATACTTTTTGCGCCTTCAACA
AAAATGCTCTAAATCATCAAATTCTGGACAAATATGTAGAATTACCACGA
CATAACACAATACTTATAGAGTAAGAGTGTAAAAATCAAGGTGTACTACC
TGCTTAACAAGTCCTTGGTGCATGTTATTCACCTCAATACTACTACTACT
ACTACATATTATCGTTTCTTCTTCTGATTCCGACACACACAGAAAAAAAA
CCGGTTGATTTCCCTATGGCTTTATTTTTCATTCACAAGTATGTAGAGAT
CACTGAGGTATAGCTTTAAATCCTGATGTTTACTTAAAACATGAATGTAT
TATTTAATCTCGTTTCAATATTAAAATGAGAAGTTTAGAGAACGAAAGAG
AAAAAAATAATAGAAGCTTTTGATGGCTCGATATAAGGATACATAATAAA
AATAACGACGATGTATTTTTGTACATAATATATTGATGGCCAAAATATGA
CCAAAGGTGCATATGTATAAAAGGCAGAACGTATACGGATGTACTGAACT
TCAAGGACSAATTCCCCCCCCCCCCATCTATCCAGTATCTATATCTTCAA
AATATGGTTGTATACTATGTATTTACTTGAGAAAGTTTTTGACTGTCCTG
TATGCTGGCGCGCCTTAAGAAACGGACCATAAGAAATGATGAAAAAGTTG
AATTATATGATTTTTAACTTCTTTGAAGCATCAGAAGTATTCCAACAGTC
CTCGAGTGAACTCGTGTTGTGTCAATCCATAGTAGTTTTTAATTAATAAT
ATCCACCTCCACCAGCATCTATAATCATGAAATACAGTCTATTCATTGGA
TTTTGTCTCCTTGCATTGAGCACTTCATATGCCTACGCGGATCCCTTAGA
TATCGTGGAGGATGTAGATGACATGGATGAGGAGAGGACCATCACCACAA
ACAATGGAAACGTTTTACTCTCATTCAACGCATCCAATGTTCTCTTCTAC
GGTGCCATAATCGGCATTGGACTCTTAGGTCTCGTTGCTCTTGCTGTCAT
CTTTTCTATTCCAGCATTTTCAGAACAATCTGGATATAATAACAGATACT
CTAACTCACAATATAATCAATACTATGATGAAAACGAGTCTCTTTATGAC
TATCAAGGAAGATCCACAAGATCAATCTCTGGTAAAACTTTAAATTTTTT
CGGGAGTTTTGAAAATATCTTCATATTTAAACATGCTATTTTATTTTAAA
AGCATACCCAAAAATACTTACAATTCAATATAATAATTTGTTCTCTTTTT
TTTCTTGATAGATGTTGCTCAACAATTATACGCATTGGCTGAGGCTTTCA
AAAAGTATGAGGTTGAAGAATCTTGCCAAAAATATGTTGCTTGTGCTGCC
AGACGCAATACTGAATCGTATGCTCTAATGACCATTGTCGATGATGTCAT
GAGGTAAAACCTTTCTTATATATAGCATACTCAAATAACAACATATTATA
TTACAGATCCATGCTTAAGAGCGGACATGAAAAGATTAGAGAGAAGGATG
CCTATGTTGGAGAACTTTTGGATGCGTATCTTCAAGGAGAAAGAACATCT
TGTCAACAGCATAGAAACATATGCTACAGAAAGAAATTTAATTAATATTA
TAATTTAAAGCTATTTATATTATGTTATTATAATTTTTTTAAATCACAAT
GATGGAATTCAAAACACTCCATACATTGTTGCTCATCTAAAAAAAAAACA
CACACACTTAGAATTCATTTGAATTCTGTAATATTTTTTTCCTATGAAAA
AAAAGATTTTTTTTAACTACTTCCCTCCAAAAAAAAATCATTTTTTTTCC
CCTTCTTCAAAAACAGATATTCTATTCATCTAATTTTCATATTTTTTTAT
ATGTMGTTTACTTGTGGTTACTTTATTACCCTTTTGTTATACCAATGAGA
TATAAAGTTATCTCACTTTCCATGAAAGTTACTTATTAGTGTTACTCTGT
GTTACCAATACTATCCTCAAAAAATATAGTTTTTTATTTTCTTTTTTGAA
AAAAAATAATAATTTAATGTTGTGTACATGTTATAAACTTAATGTTCTAT
ATTATACTTATAATAATTGACAGAAATATGACGAAAAGATAAATAAAAAG
TATATTTAAATTAACTATCAATAATCCATTTTTATTTCATCATTTCACCA
ATACAAAATTTATATATAAGA
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