EMLSAG00000000838, EMLSAG00000000838-683604 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000838
Unique NameEMLSAG00000000838-683604
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000838 vs. C. finmarchicus
Match: gi|592785166|gb|GAXK01169402.1| (TSA: Calanus finmarchicus comp1103_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.540e-1
Identity = 13/27 (48.15%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:    1 MVLSYDKINFIFDSPADVTFDFDYSQC 27
            + LS DK NF+   P  V FDF+YS  
Sbjct: 1261 LALSEDKRNFLRAPPTGVNFDFEYSAV 1341
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BLAST of EMLSAG00000000838 vs. C. finmarchicus
Match: gi|592785167|gb|GAXK01169401.1| (TSA: Calanus finmarchicus comp1103_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.541e-1
Identity = 13/27 (48.15%), Postives = 16/27 (59.26%), Query Frame = 0 
Query:    1 MVLSYDKINFIFDSPADVTFDFDYSQC 27
            + LS DK NF+   P  V FDF+YS  
Sbjct: 1281 LALSEDKRNFLRAPPTGVNFDFEYSAV 1361
[Close]
BLAST of EMLSAG00000000838 vs. C. finmarchicus
Match: gi|592800303|gb|GAXK01154265.1| (TSA: Calanus finmarchicus comp1692069_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 6.107e-1
Identity = 19/66 (28.79%), Postives = 32/66 (48.48%), Query Frame = 0 
Query:   31 KSVEKYVMTNQKHILKTGKDIEAKKTPVDNPSSDEEFVSGSFQACSK---DMDKATENADKLSKVY 93
            +++ K + T  K +    K I   K P+ NPS     +S S + C K   ++ +A +N  K +K Y
Sbjct:  229 QNLSKLIQTYPKTLPNLSKPIPTYK-PIPNPSQTNSNLSKSIKTCPKPIPNLSQAYQNLSKPNKTY 423
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BLAST of EMLSAG00000000838 vs. L. salmonis peptides
Match: EMLSAP00000000838 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1140:93766:94191:-1 gene:EMLSAG00000000838 transcript:EMLSAT00000000838 description:"snap_masked-LSalAtl2s1140-processed-gene-0.4")

HSP 1 Score: 210.69 bits (535), Expect = 1.702e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:    1 MVLSYDKINFIFDSPADVTFDFDYSQCDELKSVEKYVMTNQKHILKTGKDIEAKKTPVDNPSSDEEFVSGSFQACSKDMDKATENADKLSKVYPVDEIEDEMEN 104
            MVLSYDKINFIFDSPADVTFDFDYSQCDELKSVEKYVMTNQKHILKTGKDIEAKKTPVDNPSSDEEFVSGSFQACSKDMDKATENADKLSKVYPVDEIEDEMEN
Sbjct:    1 MVLSYDKINFIFDSPADVTFDFDYSQCDELKSVEKYVMTNQKHILKTGKDIEAKKTPVDNPSSDEEFVSGSFQACSKDMDKATENADKLSKVYPVDEIEDEMEN 104
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BLAST of EMLSAG00000000838 vs. L. salmonis peptides
Match: EMLSAP00000001505 (pep:novel supercontig:LSalAtl2s:LSalAtl2s125:245240:246657:-1 gene:EMLSAG00000001505 transcript:EMLSAT00000001505 description:"maker-LSalAtl2s125-snap-gene-2.20")

HSP 1 Score: 129.798 bits (325), Expect = 3.431e-37
Identity = 75/149 (50.34%), Postives = 86/149 (57.72%), Query Frame = 0 
Query:    1 MVLSYDKINFIFDSPADVTFDFDYSQ---------------------------------------------CDELKSVEKYVMTNQKHILKTGKDIEAKKTPVDNPSSDEEFVSGSFQACSKDMDKATENADKLSKVYPVDEIEDEMEN 104
            M LS DK NF+FD PA VTFDFDYSQ                                             C ELKSV++YV+T+Q+HI KTGK IEA +TP+D+PS DEEFVS SFQ  SKDMD+ATEN  KLSKV P DEIE E+EN
Sbjct:  182 MALSSDKRNFLFDPPAGVTFDFDYSQATGIAEGLLAQDENLQLMRYRIVPKLKNEESFWKNYFYRVSLIQQCYELKSVQEYVVTDQEHIPKTGKHIEATETPIDDPSGDEEFVSDSFQTSSKDMDEATENVKKLSKVSPEDEIEAELEN 330
[Close]
BLAST of EMLSAG00000000838 vs. nr
Match: gi|225713446|gb|ACO12569.1| (Synapse-associated protein 1 [Lepeophtheirus salmonis])

HSP 1 Score: 128.257 bits (321), Expect = 1.055e-33
Identity = 74/149 (49.66%), Postives = 87/149 (58.39%), Query Frame = 0 
Query:    1 MVLSYDKINFIFDSPADVTFDFDYSQ---------------------------------------------CDELKSVEKYVMTNQKHILKTGKDIEAKKTPVDNPSSDEEFVSGSFQACSKDMDKATENADKLSKVYPVDEIEDEMEN 104
            M LS DK NF+FD PA+VTFDFDYSQ                                             C ELKSV++YV+T+Q+HI KTGK IEA +TP+D+PS DEEFVS SFQ  SKDMD+ATEN  KLSKV P DEIE E+E+
Sbjct:  186 MALSSDKRNFLFDPPAEVTFDFDYSQATGIAEGLLAQDENLQLMRYRIVPKLKNEESFWKNYFYRVSLIQQCYELKSVQEYVVTDQEHIPKTGKHIEATETPIDDPSGDEEFVSDSFQTSSKDMDEATENVKKLSKVSPEDEIEAELES 334
[Close]
BLAST of EMLSAG00000000838 vs. nr
Match: gi|290562023|gb|ADD38408.1| (Synapse-associated protein 1 [Lepeophtheirus salmonis])

HSP 1 Score: 125.561 bits (314), Expect = 1.271e-32
Identity = 74/149 (49.66%), Postives = 85/149 (57.05%), Query Frame = 0 
Query:    1 MVLSYDKINFIFDSPADVTFDFDYSQ---------------------------------------------CDELKSVEKYVMTNQKHILKTGKDIEAKKTPVDNPSSDEEFVSGSFQACSKDMDKATENADKLSKVYPVDEIEDEMEN 104
            M LS DK NF+FD PA VTFDFD SQ                                             C ELKSV++YV+T+Q+HI KTGK IEA +TP+D+PS DEEFVS SFQ  SKDMD+ATEN  KLSKV P DEIE E+EN
Sbjct:  186 MALSSDKRNFLFDPPAGVTFDFDCSQATGIAEGLLAQDENLQLMRYRIVPKLKNEESFWKNYFYRVSLIQQCYELKSVQEYVVTDQEHIPKTGKHIEATETPIDDPSGDEEFVSDSFQTSSKDMDEATENVKKLSKVSPEDEIEAELEN 334
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000838 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000838 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592785166|gb|GAXK01169402.1|3.540e-148.15TSA: Calanus finmarchicus comp1103_c1_seq2 transcr... [more]
gi|592785167|gb|GAXK01169401.1|3.541e-148.15TSA: Calanus finmarchicus comp1103_c1_seq1 transcr... [more]
gi|592800303|gb|GAXK01154265.1|6.107e-128.79TSA: Calanus finmarchicus comp1692069_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000838 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000008381.702e-71100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1140:9376... [more]
EMLSAP000000015053.431e-3750.34pep:novel supercontig:LSalAtl2s:LSalAtl2s125:24524... [more]
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BLAST of EMLSAG00000000838 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000838 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000838 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|225713446|gb|ACO12569.1|1.055e-3349.66Synapse-associated protein 1 [Lepeophtheirus salmo... [more]
gi|290562023|gb|ADD38408.1|1.271e-3249.66Synapse-associated protein 1 [Lepeophtheirus salmo... [more]
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BLAST of EMLSAG00000000838 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1140supercontigLSalAtl2s1140:93766..94191 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1140-processed-gene-0.4
Biotypeprotein_coding
EvidenceIEA
NoteSynapse-associated protein 1 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000838 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000838EMLSAT00000000838-696685Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1140:93766..94191-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000838-683604 ID=EMLSAG00000000838-683604|Name=EMLSAG00000000838|organism=Lepeophtheirus salmonis|type=gene|length=426bp|location=Sequence derived from alignment at LSalAtl2s1140:93766..94191- (Lepeophtheirus salmonis)
ATGGTCCTTTCTTATGATAAAATAAACTTTATTTTTGATTCTCCTGCTGA
TGTAACTTTTGATTTTGATTACTCTCAAGTAACAAGAATATGAAAATCTC
CCATTTATGCCCTAAATAAATAGTCCAAAGTTGAAAAATGATTAATCCTT
TGGAATAACTACTTCCATAGAGTAATTTTCATTCAACAGTGCGATGAGTT
GAAATCTGTTGAAAAGTATGTTATGACTAATCAAAAACATATACTTAAAA
CTGGGAAGGATATCGAAGCTAAAAAAACACCTGTTGACAACCCCTCCAGT
GATGAAGAGTTTGTTTCAGGCTCATTTCAAGCCTGTTCCAAGGATATGGA
TAAAGCGACTGAGAACGCGGACAAACTTTCCAAGGTTTATCCAGTGGATG
AAATTGAAGATGAAATGGAGAATTAA
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