EMLSAG00000000845, EMLSAG00000000845-683611 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000845
Unique NameEMLSAG00000000845-683611
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000845 vs. C. finmarchicus
Match: gi|592828710|gb|GAXK01128614.1| (TSA: Calanus finmarchicus comp1991627_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.628e+0
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 0 
Query:    6 IILLFSFY-----PLLNHAVDINVTERISTEEE 33
            +I+ F +Y     PL+   VDINV +RI TE+E
Sbjct:  485 LIIRFGYYYFDNTPLIGKVVDINVWDRILTEQE 583
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BLAST of EMLSAG00000000845 vs. C. finmarchicus
Match: gi|592922259|gb|GAXK01036130.1| (TSA: Calanus finmarchicus comp109547_c5_seq7 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.025e+0
Identity = 22/88 (25.00%), Postives = 38/88 (43.18%), Query Frame = 0 
Query:   96 KYKSLYDFLTQDEEDKTFLVKNSYGLITSADIANKTEKDPFSFF-----AESNASPVSFYEPTNGVVVKELKREKNCCRYIFTKNNTF 178
            + K+ +  + +D E+  F   N +   T  +   + E++P         +   ASP +  +P    + KE+  EK CC Y F   N F
Sbjct: 1512 RLKTHHAKVHKDLEESEFNYINLFKEETKIETPKQKEENPLQILKKVKASHKKASPKTKIKPVQVRIKKEVGEEK*CCSYYFPCANRF 1775
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BLAST of EMLSAG00000000845 vs. C. finmarchicus
Match: gi|592922261|gb|GAXK01036128.1| (TSA: Calanus finmarchicus comp109547_c5_seq5 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.105e+0
Identity = 22/88 (25.00%), Postives = 38/88 (43.18%), Query Frame = 0 
Query:   96 KYKSLYDFLTQDEEDKTFLVKNSYGLITSADIANKTEKDPFSFF-----AESNASPVSFYEPTNGVVVKELKREKNCCRYIFTKNNTF 178
            + K+ +  + +D E+  F   N +   T  +   + E++P         +   ASP +  +P    + KE+  EK CC Y F   N F
Sbjct: 1692 RLKTHHAKVHKDLEESEFNYINLFKEETKIETPKQKEENPLQILKKVKASHKKASPKTKIKPVQVRIKKEVGEEK*CCSYYFPCANRF 1955
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BLAST of EMLSAG00000000845 vs. C. finmarchicus
Match: gi|592922262|gb|GAXK01036127.1| (TSA: Calanus finmarchicus comp109547_c5_seq4 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.108e+0
Identity = 22/88 (25.00%), Postives = 38/88 (43.18%), Query Frame = 0 
Query:   96 KYKSLYDFLTQDEEDKTFLVKNSYGLITSADIANKTEKDPFSFF-----AESNASPVSFYEPTNGVVVKELKREKNCCRYIFTKNNTF 178
            + K+ +  + +D E+  F   N +   T  +   + E++P         +   ASP +  +P    + KE+  EK CC Y F   N F
Sbjct: 1697 RLKTHHAKVHKDLEESEFNYINLFKEETKIETPKQKEENPLQILKKVKASHKKASPKTKIKPVQVRIKKEVGEEK*CCSYYFPCANRF 1960
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BLAST of EMLSAG00000000845 vs. C. finmarchicus
Match: gi|592837186|gb|GAXK01120358.1| (TSA: Calanus finmarchicus comp6668224_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 6.957e+0
Identity = 18/47 (38.30%), Postives = 24/47 (51.06%), Query Frame = 0 
Query:  118 SYGLITSADIANKTEKDPFSFFAESNASPVSFYEPTNGVVVKELKRE 164
              G ITSADIAN    D     A+  A+ V+F     G+ + E+K E
Sbjct:   77 GLGPITSADIANAAGDDQ---TAKVRAAAVAFIRNKLGITIDEIKDE 208
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BLAST of EMLSAG00000000845 vs. C. finmarchicus
Match: gi|592834930|gb|GAXK01122614.1| (TSA: Calanus finmarchicus comp509632_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 7.510e+0
Identity = 21/45 (46.67%), Postives = 27/45 (60.00%), Query Frame = 0 
Query:   16 LNHAVDINVTERISTEEEPSILKTPTINYNNSSYDENNQTRNDVP 60
            L HA DI  TE I   +E  ILK  T + N+SS DEN  ++ D+P
Sbjct: 6315 LGHAGDIVYTE-IKNAQERVILKLETKSENSSSEDENEASQ-DLP 6443
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BLAST of EMLSAG00000000845 vs. C. finmarchicus
Match: gi|592834931|gb|GAXK01122613.1| (TSA: Calanus finmarchicus comp509632_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 7.511e+0
Identity = 21/45 (46.67%), Postives = 27/45 (60.00%), Query Frame = 0 
Query:   16 LNHAVDINVTERISTEEEPSILKTPTINYNNSSYDENNQTRNDVP 60
            L HA DI  TE I   +E  ILK  T + N+SS DEN  ++ D+P
Sbjct: 6315 LGHAGDIVYTE-IKNAQERVILKLETKSENSSSEDENEASQ-DLP 6443
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BLAST of EMLSAG00000000845 vs. C. finmarchicus
Match: gi|592834932|gb|GAXK01122612.1| (TSA: Calanus finmarchicus comp509632_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 7.854e+0
Identity = 21/45 (46.67%), Postives = 27/45 (60.00%), Query Frame = 0 
Query:   16 LNHAVDINVTERISTEEEPSILKTPTINYNNSSYDENNQTRNDVP 60
            L HA DI  TE I   +E  ILK  T + N+SS DEN  ++ D+P
Sbjct: 6367 LGHAGDIVYTE-IKNAQERVILKLETKSENSSSEDENEASQ-DLP 6495
[Close]
BLAST of EMLSAG00000000845 vs. C. finmarchicus
Match: gi|592834933|gb|GAXK01122611.1| (TSA: Calanus finmarchicus comp509632_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 7.854e+0
Identity = 21/45 (46.67%), Postives = 27/45 (60.00%), Query Frame = 0 
Query:   16 LNHAVDINVTERISTEEEPSILKTPTINYNNSSYDENNQTRNDVP 60
            L HA DI  TE I   +E  ILK  T + N+SS DEN  ++ D+P
Sbjct: 6367 LGHAGDIVYTE-IKNAQERVILKLETKSENSSSEDENEASQ-DLP 6495
[Close]
BLAST of EMLSAG00000000845 vs. L. salmonis peptides
Match: EMLSAP00000000845 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1142:192617:193798:1 gene:EMLSAG00000000845 transcript:EMLSAT00000000845 description:"maker-LSalAtl2s1142-augustus-gene-1.34")

HSP 1 Score: 374.785 bits (961), Expect = 1.852e-133
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0 
Query:    1 MFMDTIILLFSFYPLLNHAVDINVTERISTEEEPSILKTPTINYNNSSYDENNQTRNDVPTKESISNVLSTTVNTTSVDGEEDKNVTEAPILSTTKYKSLYDFLTQDEEDKTFLVKNSYGLITSADIANKTEKDPFSFFAESNASPVSFYEPTNGVVVKELKREKNCCRYIFTKNNTFLCIPRKCK 186
            MFMDTIILLFSFYPLLNHAVDINVTERISTEEEPSILKTPTINYNNSSYDENNQTRNDVPTKESISNVLSTTVNTTSVDGEEDKNVTEAPILSTTKYKSLYDFLTQDEEDKTFLVKNSYGLITSADIANKTEKDPFSFFAESNASPVSFYEPTNGVVVKELKREKNCCRYIFTKNNTFLCIPRKCK
Sbjct:    1 MFMDTIILLFSFYPLLNHAVDINVTERISTEEEPSILKTPTINYNNSSYDENNQTRNDVPTKESISNVLSTTVNTTSVDGEEDKNVTEAPILSTTKYKSLYDFLTQDEEDKTFLVKNSYGLITSADIANKTEKDPFSFFAESNASPVSFYEPTNGVVVKELKREKNCCRYIFTKNNTFLCIPRKCK 186
[Close]
BLAST of EMLSAG00000000845 vs. L. salmonis peptides
Match: EMLSAP00000005943 (pep:novel supercontig:LSalAtl2s:LSalAtl2s321:145193:148301:1 gene:EMLSAG00000005943 transcript:EMLSAT00000005943 description:"maker-LSalAtl2s321-snap-gene-1.36")

HSP 1 Score: 172.17 bits (435), Expect = 2.802e-54
Identity = 102/156 (65.38%), Postives = 118/156 (75.64%), Query Frame = 0 
Query:    1 MFMDTIILLFSFYPLLNHAVDINVTERISTEEEPSILKTPTINYNNSSYDENNQTRNDVPTKESISNVLSTTVNTTSVDGEEDKNVTEAPILST-TKYKSLYDFLTQDEEDKTFLVKNSYGLITSADIANKTEKDPFSFF--AESNASPVSFYEPT 153
            MFM+T ILLFSFYP L++A+D NVT+ ISTEE PSI  T TINYNNS YDE + TRN   T ESISN+LSTTVN + VDGEEDK++TEAPIL T TK+ SL+D LT+  EDKT  VKNS G ITS   ANKT+ +   FF  AES+ SPVSF EPT
Sbjct:    1 MFMNTFILLFSFYPHLHNAIDNNVTQIISTEE-PSIPPTTTINYNNSLYDEKDYTRNKFSTDESISNLLSTTVNISIVDGEEDKSITEAPILCTRTKHVSLHDLLTEGMEDKTLYVKNSKGEITSYSTANKTDIESVPFFARAESSESPVSFNEPT 155
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000845 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000845 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592828710|gb|GAXK01128614.1|1.628e+045.45TSA: Calanus finmarchicus comp1991627_c0_seq1 tran... [more]
gi|592922259|gb|GAXK01036130.1|6.025e+025.00TSA: Calanus finmarchicus comp109547_c5_seq7 trans... [more]
gi|592922261|gb|GAXK01036128.1|6.105e+025.00TSA: Calanus finmarchicus comp109547_c5_seq5 trans... [more]
gi|592922262|gb|GAXK01036127.1|6.108e+025.00TSA: Calanus finmarchicus comp109547_c5_seq4 trans... [more]
gi|592837186|gb|GAXK01120358.1|6.957e+038.30TSA: Calanus finmarchicus comp6668224_c0_seq1 tran... [more]
gi|592834930|gb|GAXK01122614.1|7.510e+046.67TSA: Calanus finmarchicus comp509632_c2_seq4 trans... [more]
gi|592834931|gb|GAXK01122613.1|7.511e+046.67TSA: Calanus finmarchicus comp509632_c2_seq3 trans... [more]
gi|592834932|gb|GAXK01122612.1|7.854e+046.67TSA: Calanus finmarchicus comp509632_c2_seq2 trans... [more]
gi|592834933|gb|GAXK01122611.1|7.854e+046.67TSA: Calanus finmarchicus comp509632_c2_seq1 trans... [more]
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BLAST of EMLSAG00000000845 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000008451.852e-133100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1142:1926... [more]
EMLSAP000000059432.802e-5465.38pep:novel supercontig:LSalAtl2s:LSalAtl2s321:14519... [more]
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BLAST of EMLSAG00000000845 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000845 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000845 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000845 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1142supercontigLSalAtl2s1142:192617..193798 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1142-augustus-gene-1.34
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000845 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000845EMLSAT00000000845-696692Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1142:192617..193798+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000845-683611 ID=EMLSAG00000000845-683611|Name=EMLSAG00000000845|organism=Lepeophtheirus salmonis|type=gene|length=1182bp|location=Sequence derived from alignment at LSalAtl2s1142:192617..193798+ (Lepeophtheirus salmonis)
GAGTATACTCAATACCTTCAATGCTAATGCGTATTACGATGTTAATAGTA
TCTTCATAGTAAGTTTTTCAACATGTTCATGGACACAATAATACTTCTAT
TCAGTTTTTATCCGCTCTTAAATCATGCAGTCGATATTAATGTGACTGAA
AGGATTTCAACTGAGGAGGAGCCTTCAATACTCAAAACGCCTACGATTAA
TTATAATAATTCTTCATATGATGAAAACAATCAAACAAGGAATGATGTTC
CCACAAAAGAATCCATTTCAAACGTTCTCTCAACTACAGTCAATACAACC
AGTGTGGATGGAGAGGAAGATAAAAATGTAACTGAGGCCCCAATACTCTC
CACAACCAAATATAAATCTCTTTATGATTTCTTAACTCAAGACGAGGAGG
ATAAGACTTTTTTAGTGAAGAATTCTTATGGATTAATTACTTCCGCTGAT
ATAGCTAACAAGACAGAAAAAGATCCTTTTAGTTTCTTCGCTGAATCCAA
TGCATCACCTGTGTCATTTTATGAACCAACGGTAATACATCATTATGTAG
ATTTAAAAAAATTAACTTGACTATGTATTCTTTTTTCAGAATGGAGTCGT
GGTTAAAGAATTGAAGAGAGAGAAGAATTGTTGTCGTTATATCTTTACTA
AGAACAATACGTTTCTGTGCATCCCCAGAAAATGCAAGTGAACAAATTCC
AGCGTATAATAAAGAAATGATGTTTGTCTTCAAATAATAACGATTAAAAT
ATCAATAATTAACCAATATCATATCTAGTCACCAGCTATACATTCATCTA
AGAACAAAATAAAAGCAGTTGATATTTGAAGAGCAAAAAAAAGGACATCA
TTATATAATACAATTAAGCTAACAAAATTTTACTTTACAAAAATCTTCTT
AATTCCATATACAATCCTTGTAGTACTTCAGTATCTAATAAGTAATATGT
AATTATTTTTGTCGTACCAAATCTGGTTTTCGAGAATTTTCGAGTTTATT
TATTTTTTACCCTTTCTATAGGTTTGACCCAACTTTTGAAAATGAAACAA
ATCAATAATTCACATAAAAGTGAATTATTTTTTGCTTAATTTTAAAATAG
ATCTATATGCAATCATCAAATTTTGAGAAAAAACGTTTTAAAGGAATAAT
TACTTTATAGTTAAATAAAGGCAACGGCAACA
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