EMLSAG00000000906, EMLSAG00000000906-683672 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000906
Unique NameEMLSAG00000000906-683672
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000906 vs. C. finmarchicus
Match: gi|592875812|gb|GAXK01081765.1| (TSA: Calanus finmarchicus comp952603_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 3.978e-1
Identity = 19/59 (32.20%), Postives = 29/59 (49.15%), Query Frame = 0 
Query:  104 ISTLKLKIVYRESEEESCYGRTRQVCKNV--QKWTKFTKKSCGYNTTKKCDKLPTQKWS 160
            I + + + V R  EEE C    RQVC NV  Q      ++ C     ++C+ +P Q+ S
Sbjct:   58 IPSQQCQQVPRRVEEEVCTTIPRQVCNNVPRQVCNNVPRQECQNVPREQCNNVPRQQCS 234
[Close]
BLAST of EMLSAG00000000906 vs. C. finmarchicus
Match: gi|592951599|gb|GAXK01006954.1| (TSA: Calanus finmarchicus comp69387_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.476e+0
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:  123 GRTRQVCKNVQKWTKFTKKSCGYNTTKK--CDKLPTQK 158
            GR  Q CK +   ++FT  SCG  ++KK   +K P QK
Sbjct:  322 GRANQACKCISTGSQFTLDSCGRLSSKKQSSEKFPAQK 435
[Close]
BLAST of EMLSAG00000000906 vs. C. finmarchicus
Match: gi|592951600|gb|GAXK01006953.1| (TSA: Calanus finmarchicus comp69387_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.481e+0
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:  123 GRTRQVCKNVQKWTKFTKKSCGYNTTKK--CDKLPTQK 158
            GR  Q CK +   ++FT  SCG  ++KK   +K P QK
Sbjct:  322 GRANQACKCISTGSQFTLDSCGRLSSKKQSSEKFPAQK 435
[Close]
BLAST of EMLSAG00000000906 vs. C. finmarchicus
Match: gi|592806900|gb|GAXK01147668.1| (TSA: Calanus finmarchicus comp43525_c6_seq19 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.945e+0
Identity = 40/158 (25.32%), Postives = 62/158 (39.24%), Query Frame = 0 
Query:    8 EEGCNHGAQQECVMVPKKTCSQVSEEEIPQVEHNMTDNDSVADTRF-QKRSVNDIAXXXXXXXXXXXXIEKEKAFKGYELGSKYYKLSKDN-PRDST-YISTLKLKIVYRESEEESCYGRTRQVCKNV--QKWTKFTKKSCGYNTTKKCDKLPTQKWS 160
            ++ C +  QQEC  VPK+ C  V  ++  QV   + DN      R   K+S  ++ K   +                 +      ++  +N PR     +   + K V R    + C    RQ CKNV  Q  T   K+ C     ++C  +P QK S
Sbjct:    3 KQQCRNVPQQECSNVPKQQCRSVPRQKCKQVSRQVCDNVPKQQCRMVPKQSCKNVPKQNCQNV-------------PMKKCQNVPRMKCENVPRQQCKNVPMQQCKNVPR----QKCENVPRQECKNVPMQSCTMVPKQECKNVPRQECRNVPRQKCS 425
[Close]
BLAST of EMLSAG00000000906 vs. C. finmarchicus
Match: gi|592890198|gb|GAXK01068177.1| (TSA: Calanus finmarchicus comp16138_c5_seq43 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.993e+0
Identity = 18/51 (35.29%), Postives = 26/51 (50.98%), Query Frame = 0 
Query:  112 VYRESEEESCYGRTRQVCKNVQKWTKFTKKSCGYNTTKKCDKLPTQKWSIL 162
             Y  S +E C    +QVC +      + K+S GY T +KC K+P Q  S +
Sbjct:  235 AYETSYQEKCSTTYKQVCTS-SGHGGYGKRSAGYGTQQKCSKVPQQSCSSV 384
[Close]
BLAST of EMLSAG00000000906 vs. C. finmarchicus
Match: gi|592806901|gb|GAXK01147667.1| (TSA: Calanus finmarchicus comp43525_c6_seq18 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.996e+0
Identity = 40/158 (25.32%), Postives = 62/158 (39.24%), Query Frame = 0 
Query:    8 EEGCNHGAQQECVMVPKKTCSQVSEEEIPQVEHNMTDNDSVADTRF-QKRSVNDIAXXXXXXXXXXXXIEKEKAFKGYELGSKYYKLSKDN-PRDST-YISTLKLKIVYRESEEESCYGRTRQVCKNV--QKWTKFTKKSCGYNTTKKCDKLPTQKWS 160
            ++ C +  QQEC  VPK+ C  V  ++  QV   + DN      R   K+S  ++ K   +                 +      ++  +N PR     +   + K V R    + C    RQ CKNV  Q  T   K+ C     ++C  +P QK S
Sbjct:    3 KQQCRNVPQQECSNVPKQQCRSVPRQKCKQVSRQVCDNVPKQQCRMVPKQSCKNVPKQNCQNV-------------PMKKCQNVPRMKCENVPRQQCKNVPMQQCKNVPR----QKCENVPRQECKNVPMQSCTMVPKQECKNVPRQECRNVPRQKCS 425
[Close]
BLAST of EMLSAG00000000906 vs. C. finmarchicus
Match: gi|592890202|gb|GAXK01068173.1| (TSA: Calanus finmarchicus comp16138_c5_seq39 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.083e+0
Identity = 18/51 (35.29%), Postives = 26/51 (50.98%), Query Frame = 0 
Query:  112 VYRESEEESCYGRTRQVCKNVQKWTKFTKKSCGYNTTKKCDKLPTQKWSIL 162
             Y  S +E C    +QVC +      + K+S GY T +KC K+P Q  S +
Sbjct:  235 AYETSYQEKCSTTYKQVCTS-SGHGGYGKRSAGYGTQQKCSKVPQQSCSSV 384
[Close]
BLAST of EMLSAG00000000906 vs. C. finmarchicus
Match: gi|592890205|gb|GAXK01068170.1| (TSA: Calanus finmarchicus comp16138_c5_seq36 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.302e+0
Identity = 18/51 (35.29%), Postives = 26/51 (50.98%), Query Frame = 0 
Query:  112 VYRESEEESCYGRTRQVCKNVQKWTKFTKKSCGYNTTKKCDKLPTQKWSIL 162
             Y  S +E C    +QVC +      + K+S GY T +KC K+P Q  S +
Sbjct:  235 AYETSYQEKCSTTYKQVCTS-SGHGGYGKRSAGYGTQQKCSKVPQQSCSSV 384
[Close]
BLAST of EMLSAG00000000906 vs. C. finmarchicus
Match: gi|592933667|gb|GAXK01024886.1| (TSA: Calanus finmarchicus comp579946_c1_seq7 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 3.953e+0
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:    2 VDSCSSEEGCNHGAQQECVMVPKKTCSQV 30
            + S  S   C++  +QEC  VPK +CSQV
Sbjct:  833 IPSAPSSAACSYVPKQECKSVPKPSCSQV 919
[Close]
BLAST of EMLSAG00000000906 vs. C. finmarchicus
Match: gi|592933668|gb|GAXK01024885.1| (TSA: Calanus finmarchicus comp579946_c1_seq6 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 4.002e+0
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:    2 VDSCSSEEGCNHGAQQECVMVPKKTCSQV 30
            + S  S   C++  +QEC  VPK +CSQV
Sbjct:  833 IPSAPSSAACSYVPKQECKSVPKPSCSQV 919
[Close]
BLAST of EMLSAG00000000906 vs. L. salmonis peptides
Match: EMLSAP00000000906 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1158:76481:77090:1 gene:EMLSAG00000000906 transcript:EMLSAT00000000906 description:"snap_masked-LSalAtl2s1158-processed-gene-0.4")

HSP 1 Score: 335.88 bits (860), Expect = 5.762e-119
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 
Query:    1 MVDSCSSEEGCNHGAQQECVMVPKKTCSQVSEEEIPQVEHNMTDNDSVADTRFQKRSVNDIAKGFKKFGSKHGFIEKEKAFKGYELGSKYYKLSKDNPRDSTYISTLKLKIVYRESEEESCYGRTRQVCKNVQKWTKFTKKSCGYNTTKKCDKLPTQKWSIL 162
            MVDSCSSEEGCNHGAQQECVMVPKKTCSQVSEEEIPQVEHNMTDNDSVADTRFQKRSVNDIAKGFKKFGSKHGFIEKEKAFKGYELGSKYYKLSKDNPRDSTYISTLKLKIVYRESEEESCYGRTRQVCKNVQKWTKFTKKSCGYNTTKKCDKLPTQKWSIL
Sbjct:    1 MVDSCSSEEGCNHGAQQECVMVPKKTCSQVSEEEIPQVEHNMTDNDSVADTRFQKRSVNDIAKGFKKFGSKHGFIEKEKAFKGYELGSKYYKLSKDNPRDSTYISTLKLKIVYRESEEESCYGRTRQVCKNVQKWTKFTKKSCGYNTTKKCDKLPTQKWSIL 162
[Close]
BLAST of EMLSAG00000000906 vs. L. salmonis peptides
Match: EMLSAP00000002602 (pep:novel supercontig:LSalAtl2s:LSalAtl2s151:51919:52854:-1 gene:EMLSAG00000002602 transcript:EMLSAT00000002602 description:"augustus_masked-LSalAtl2s151-processed-gene-0.1")

HSP 1 Score: 186.422 bits (472), Expect = 3.094e-58
Identity = 113/202 (55.94%), Postives = 125/202 (61.88%), Query Frame = 0 
Query:    1 MVDSCSSEEGCNHGAQQECVMVPKKTCSQVSEEEI----------------------------------------PQVEHNMTDNDSVADTRFQKRSVNDIAKGFKK-FGSKHGFIEKEKAFKGYELGSKYYKLSKDNPRDSTY-ISTLKLKIVYRESEEESCYGRTRQVCKNVQKWTKFTKKSCGYNTTKKCDKLPTQKWS 160
            MVDSCS+EE CN   Q+ECV +PKKTCSQV +EEI                                        P  EH++ ++DSVADTR QKRS   IAK  KK FGSKH  IEK+KA KGYE+GSK+YK SKD   DS   I TLKLK V RESEEESCY RTRQVC NVQK TK  KKSCG+N TKKC KLPTQK S
Sbjct:   61 MVDSCSTEEECNPSTQRECVKIPKKTCSQVPDEEIIVDQVPLSPVIIETEVIIPEVPTFEDGEEVEYTDEYVTPKPHTEHDIINDDSVADTRLQKRSAKAIAKVIKKKFGSKHSIIEKKKALKGYEIGSKHYKKSKDYDSDSLLSIPTLKLKTVCRESEEESCYDRTRQVCNNVQKCTKLPKKSCGFNATKKCAKLPTQKCS 262
[Close]
BLAST of EMLSAG00000000906 vs. nr
Match: gi|155966189|gb|ABU41049.1| (putative exonuclease I [Lepeophtheirus salmonis])

HSP 1 Score: 185.652 bits (470), Expect = 8.087e-55
Identity = 113/202 (55.94%), Postives = 125/202 (61.88%), Query Frame = 0 
Query:    1 MVDSCSSEEGCNHGAQQECVMVPKKTCSQVSEEEI----------------------------------------PQVEHNMTDNDSVADTRFQKRSVNDIAKGFKK-FGSKHGFIEKEKAFKGYELGSKYYKLSKDNPRDSTY-ISTLKLKIVYRESEEESCYGRTRQVCKNVQKWTKFTKKSCGYNTTKKCDKLPTQKWS 160
            MVDSCS+EE CN   Q+ECV +PKKTCSQV +EEI                                        P  EH++ ++DSVADTR QKRS   IAK  KK FGSKH  IEK+KA KGYE+GSK+YK SKD   DS   I TLKLK V RESEEESCY RTRQVC NVQK TK  KKSCG+N TKKC KLPTQK S
Sbjct:  114 MVDSCSTEEECNPSTQRECVKIPKKTCSQVPDEEIIVDQVPLSPVIIETEVIIPEVPTFEDGEEVEYTDEYVTPKPHTEHDIINDDSVADTRLQKRSAKAIAKVIKKKFGSKHSIIEKKKALKGYEIGSKHYKKSKDYDSDSLLSIPTLKLKTVCRESEEESCYDRTRQVCNNVQKCTKLPKKSCGFNATKKCAKLPTQKCS 315
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000906 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000906 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592875812|gb|GAXK01081765.1|3.978e-132.20TSA: Calanus finmarchicus comp952603_c0_seq1 trans... [more]
gi|592951599|gb|GAXK01006954.1|2.476e+042.11TSA: Calanus finmarchicus comp69387_c1_seq2 transc... [more]
gi|592951600|gb|GAXK01006953.1|2.481e+042.11TSA: Calanus finmarchicus comp69387_c1_seq1 transc... [more]
gi|592806900|gb|GAXK01147668.1|2.945e+025.32TSA: Calanus finmarchicus comp43525_c6_seq19 trans... [more]
gi|592890198|gb|GAXK01068177.1|2.993e+035.29TSA: Calanus finmarchicus comp16138_c5_seq43 trans... [more]
gi|592806901|gb|GAXK01147667.1|2.996e+025.32TSA: Calanus finmarchicus comp43525_c6_seq18 trans... [more]
gi|592890202|gb|GAXK01068173.1|3.083e+035.29TSA: Calanus finmarchicus comp16138_c5_seq39 trans... [more]
gi|592890205|gb|GAXK01068170.1|3.302e+035.29TSA: Calanus finmarchicus comp16138_c5_seq36 trans... [more]
gi|592933667|gb|GAXK01024886.1|3.953e+044.83TSA: Calanus finmarchicus comp579946_c1_seq7 trans... [more]
gi|592933668|gb|GAXK01024885.1|4.002e+044.83TSA: Calanus finmarchicus comp579946_c1_seq6 trans... [more]

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BLAST of EMLSAG00000000906 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000009065.762e-119100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1158:7648... [more]
EMLSAP000000026023.094e-5855.94pep:novel supercontig:LSalAtl2s:LSalAtl2s151:51919... [more]
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BLAST of EMLSAG00000000906 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000906 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000906 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|155966189|gb|ABU41049.1|8.087e-5555.94putative exonuclease I [Lepeophtheirus salmonis][more]
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BLAST of EMLSAG00000000906 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1158supercontigLSalAtl2s1158:76481..77090 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1158-processed-gene-0.4
Biotypeprotein_coding
EvidenceIEA
Noteputative exonuclease I [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000906 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000906EMLSAT00000000906-696753Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1158:76481..77090+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000906-683672 ID=EMLSAG00000000906-683672|Name=EMLSAG00000000906|organism=Lepeophtheirus salmonis|type=gene|length=610bp|location=Sequence derived from alignment at LSalAtl2s1158:76481..77090+ (Lepeophtheirus salmonis)
ATGGTCGATTCTTGTTCGTCTGAAGAGGGATGCAACCATGGAGCTCAGCA
AGAATGTGTTATGGTTCCCAAGAAGACCTGTTCTCAAGTCTCCGAAGAAG
AAATAGTAGTCAATCAAGCTCCACAATTTTTCTGAAATGATTGAAACTGA
AGTTATTATTCTGGAGGTGCTAATGTTTGAAGACTAGGTAGAGGTAGAAT
ATACTGTTGAGTATATTAATCTTAAGCCTCAGGTGGAGCACAATATGACT
GATAATGACTCTGTTGCCGATACTAGATTCCAAAAACGCTCTGTTAATGA
TATTGCCAAAGGGTTTAAAAAGTTTGGTTCTAAACATGGATTCATCGAAA
AGGAGAAGGCTTTCAAAGGCTACGAACTTGGAAGTAAATACTACAAGTTG
TCAAAGGACAACCCAAGGGATTCTACATATATTTCAACTCTCAAGCTAAA
GATTGTCTACAGAGAATCTGAAGAGGAAAGCTGTTATGGCCGTACCCGTC
AAGTTTGTAAGAATGTTCAGAAATGGACAAAGTTTACTAAGAAGTCCTGT
GGTTACAACACTACCAAGAAGTGTGACAAATTACCTACTCAGAAATGGTC
GATATTATGA
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