EMLSAG00000000920, EMLSAG00000000920-683686 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000920
Unique NameEMLSAG00000000920-683686
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592789954|gb|GAXK01164614.1| (TSA: Calanus finmarchicus comp599222_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.555e-1
Identity = 14/35 (40.00%), Postives = 21/35 (60.00%), Query Frame = 0 
Query:   21 CHQIPGVGSFPFFIKTPVD--NAHVEKSVENVHAQ 53
             H +PG GS PF  ++PVD  NA    ++  +HA+
Sbjct: 1042 SHNLPGRGSLPFIDQSPVDSINAPTFATISAIHAR 1146
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BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592757686|gb|GAXK01196727.1| (TSA: Calanus finmarchicus comp249481_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.645e-1
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   34 IKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSS 78
            +  P DNA  +K+VEN  + +V   D  IK++ +   + +E VS+
Sbjct:  422 VNIPTDNAPADKAVENSESLVVSSDDLNIKEIIKNDEKFIESVSA 556
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BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592757691|gb|GAXK01196722.1| (TSA: Calanus finmarchicus comp249481_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.717e-1
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   34 IKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSS 78
            +  P DNA  +K+VEN  + +V   D  IK++ +   + +E VS+
Sbjct:  422 VNIPTDNAPADKAVENSESLVVSSDDLNIKEIIKNDEKFIESVSA 556
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BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592757685|gb|GAXK01196728.1| (TSA: Calanus finmarchicus comp249481_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.789e-1
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   34 IKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSS 78
            +  P DNA  +K+VEN  + +V   D  IK++ +   + +E VS+
Sbjct:  422 VNIPTDNAPADKAVENSESLVVSSDDLNIKEIIKNDEKFIESVSA 556
[Close]
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592757690|gb|GAXK01196723.1| (TSA: Calanus finmarchicus comp249481_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.870e-1
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   34 IKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSS 78
            +  P DNA  +K+VEN  + +V   D  IK++ +   + +E VS+
Sbjct:  422 VNIPTDNAPADKAVENSESLVVSSDDLNIKEIIKNDEKFIESVSA 556
[Close]
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592928291|gb|GAXK01030209.1| (TSA: Calanus finmarchicus comp210975_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.930e+0
Identity = 17/63 (26.98%), Postives = 32/63 (50.79%), Query Frame = 0 
Query:    5 LKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQIV---LVPDAKIKK 64
            L+ C    +Q  K+QRC ++ G G    F+K P     +++ +EN    I    ++ + +I+K
Sbjct:   92 LRCCSSNRDQ--KVQRCFEVNGFGGVN-FLKNPCKYLDMDEIIENNAESIENNRMIDEQRIEK 271
[Close]
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592928292|gb|GAXK01030208.1| (TSA: Calanus finmarchicus comp210975_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.884e+0
Identity = 17/63 (26.98%), Postives = 32/63 (50.79%), Query Frame = 0 
Query:    5 LKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQIV---LVPDAKIKK 64
            L+ C    +Q  K+QRC ++ G G    F+K P     +++ +EN    I    ++ + +I+K
Sbjct:  135 LRCCSSNRDQ--KVQRCFEVNGFGGVN-FLKNPCKYLDMDEIIENNAESIENNRMIDEQRIEK 314
[Close]
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592928293|gb|GAXK01030207.1| (TSA: Calanus finmarchicus comp210975_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.718e+0
Identity = 15/50 (30.00%), Postives = 25/50 (50.00%), Query Frame = 0 
Query:    5 LKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQI 54
            L+ C    +Q  K+QRC ++ G G    F+K P     +++ +EN    I
Sbjct:  141 LRCCSSNRDQ--KVQRCFEVNGFGGVN-FLKNPCKYLDMDEIIENNAESI 281
[Close]
BLAST of EMLSAG00000000920 vs. L. salmonis peptides
Match: EMLSAP00000000920 (pep:novel supercontig:LSalAtl2s:LSalAtl2s115:757843:760876:-1 gene:EMLSAG00000000920 transcript:EMLSAT00000000920 description:"maker-LSalAtl2s115-snap-gene-7.15")

HSP 1 Score: 210.69 bits (535), Expect = 1.738e-71
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MFGKLKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSSNTIPMFLKRVQTSLQIFNGCFPKS 102
            MFGKLKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSSNTIPMFLKRVQTSLQIFNGCFPKS
Sbjct:    1 MFGKLKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSSNTIPMFLKRVQTSLQIFNGCFPKS 102
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000920 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000920 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592789954|gb|GAXK01164614.1|1.555e-140.00TSA: Calanus finmarchicus comp599222_c1_seq1 trans... [more]
gi|592757686|gb|GAXK01196727.1|1.645e-133.33TSA: Calanus finmarchicus comp249481_c0_seq6 trans... [more]
gi|592757691|gb|GAXK01196722.1|1.717e-133.33TSA: Calanus finmarchicus comp249481_c0_seq1 trans... [more]
gi|592757685|gb|GAXK01196728.1|1.789e-133.33TSA: Calanus finmarchicus comp249481_c0_seq7 trans... [more]
gi|592757690|gb|GAXK01196723.1|1.870e-133.33TSA: Calanus finmarchicus comp249481_c0_seq2 trans... [more]
gi|592928291|gb|GAXK01030209.1|2.930e+026.98TSA: Calanus finmarchicus comp210975_c2_seq2 trans... [more]
gi|592928292|gb|GAXK01030208.1|3.884e+026.98TSA: Calanus finmarchicus comp210975_c2_seq1 trans... [more]
gi|592928293|gb|GAXK01030207.1|5.718e+030.00TSA: Calanus finmarchicus comp210975_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000920 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009201.738e-71100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s115:75784... [more]
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BLAST of EMLSAG00000000920 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000920 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000920 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000920 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s115supercontigLSalAtl2s115:757843..760876 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s115-snap-gene-7.15
NoteHypothetical protein
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000920 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000920EMLSAT00000000920-696767Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s115:757843..760876-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000920-683686 ID=EMLSAG00000000920-683686|Name=EMLSAG00000000920|organism=Lepeophtheirus salmonis|type=gene|length=3034bp|location=Sequence derived from alignment at LSalAtl2s115:757843..760876- (Lepeophtheirus salmonis)
ATGTTTGGGAAGTTGAAGTCTTGCCCTCAGAAGGTGGAGCAATATTTTAA
AATTCAACGATGCCACCAAATACCAGGTGTTGGAAGTTTTCCATTTTTCA
TTAAAGTAAATGTCAATCTTTGATATAATAAATAAAGTTATACAAATTAT
TTAATCATATATTATTTTTCATTTGTTTTTTTGTTGCTTCAGGAAAATTC
TTACGATGATCTTAACCGCTTTAGAAAATATATAAATTGATGTTTAGTTT
TGATAAGGCTCTCGTTAGAATTTTGAATTATATTATATATTTTCTTAATT
AACCAGAGAATTTTCTTTTAATCAGCTCGTAAATGATATCCTAGATCAGT
GGCTCTCAAACTATTTAAATTAAATGTCAATGTTATATAAAATTTGGGAT
GATCGTTTCTTTATAAAAAAAAACATTTTATTTGAATTTTTTTAGACAAA
CTATAAAAGTATTCAGAATGGCTACCCAAAACTTTTGTTATTATTCCATG
TCTCTAAGTGGAAAAACGTCGGAGCAACATCAAAAAAGGCAACGTGTGTG
CGATCTCCTTCGTGCCAGTACCCATAGGGTCTGGAATAAACAAAAATTCT
TCAGCAACAATATGGTTGACTTCTGGCCTGGATCCATGTGACACTCCTTT
ATCCCAGACTTGGCAGTTTGGGACGTCTTGAAGAATAATGTCTGCCTCMC
CTCTCATCCAAATTTAAATTGATTCGGAGCTGCCAACATGACAGTGTCNC
GCTGTAGACACAGCTTTCATCGTCAAGAGGTGCTAATCTGTTCGCCAGCG
CGTCAAGGCTGTTATTGATTGATATAATTTTGAATATTTTTTTGCTAAAT
ATCGTATTTAAATCTATGAAAAATTAAGTTTGAGTTGTTTTTCTTTATTT
CATAAAAATTATTATTATTTAATACGTTCTGCTACTACAAGTTTTGGGTA
GCAACTCCGTATTACTAATTTTGACAAGAAAATTTGAGTTAGACAGGGTT
TTACTCCCCCTCCTCCCAGCTCAAACCTCCACGTATCATTAAAGGTAGTT
CGGACAAAGTTTGAGAACAACTGTTTAAGACAATATATTTCAAGGGTTTA
TGTTTCTATTTTTTTGTTAATGAATTAATATTTTTTTGGCAAACGACGAA
AAACTTGCATTCACACATCCAACGTTTGATTTTGTGATTTCAGGAATTTC
TTAACCGTTAGTAAAATCTATGCAGGTGGCCTACCACATCGAGCATAAGT
GTAGACGTATATACGTTTATCATTTGGAAACAGACAAATAAAAGAATCTA
TTTCTAAAAACTTTGTATAATATTATTTTCAAACCATAACAACTTTCCCC
TTTCAAAATATAGAAGTATTGTAATTTTAAATGTTTTTTTGTTTTGTTTT
GGGGAGTGAAAATCCAATGATTAAATTTTGAAAAATTTGCCATTTTCTTT
TTCCCAACCCAAGAGAATTTAAATTCACATAACAAAAACAAAGTATTTAT
GAGTTACTTCTTTTCAAAGTTTTGTAGTTATTGGTAAGATTCTTGGTACT
TTTTTAAATGTTATAGCAATATTAAGTATAACAATCAACTAGGGATATAT
ATTTTTGACTTGTAAAGTCTATAAGTCTTGTCATTCAGTTTTCTTAAATG
TGTCTTACTTGTATACTTATTCAATACAGTTCAATTTTGATAGCATAGTC
CCCCCTTGTGCACAATTGATAAGATATATCCTTCCAAAAATCCCCTCTTA
ACCCTTATCTATTTGATTATTTATGATGATTGTAAATCTTTAAGAAATAT
CAGGCCTGACGTTTGAAGTTCAGTATCAGGACATCAGATATAATCATTTT
GTATATTTGACGCAGAAATACAAAAGCTTCAAAAAAATCAAAAAATTCAC
ACAGCTAATGAAACCATTAAATAATGCAATATAAGTTGTACAACATTCAT
ATTTTTTAGACCACCCTAATATATAGCTATACATTTTTGAAGGAAAACTA
CTTAAGAGAGTGCTGCTTGATTTTGTTTATCAATACAAAAATATTTTTCA
ACAGTATACTATATTCTACTAAAACACATCTGATCAAAATGCCTAGTAAG
TATATATTATAGGGATTGATAATTTAGAGGTTCTTATTTTATATATTTAT
TTTTATAGACCCCTGTGGACAATGCTCATGTGGAAAAGAGTGTGGAAAAT
GTTCATGCACAAATTGTACTTGTTCCGGATGCAAAAAGTAACGCACTCCT
TACAATGCACATGAATTATATAATTTCGATATCATGTAATTACTTATGTA
ATAAAAAACATTTATAATAAAGTATTATTATTTTTAATGAATAATTATTT
ATTCTGATGTGTAAAACCGAAAACGATTTAAAAGAATTTCTTCTACCATT
TTTTATGTCAATCATTCCTATACTGAAAAACTTTTGATTTTGATCTACCT
TCGGAGTTACGGAATAAAAGAGTGCACAATAATAAAAAGGTATATAGATT
TAAAACAAAGAGTAACCCTGAAGATTTATTATAGAGTTATAATTATAATT
CTTTGTTGGACTCAAAATATGATTGAGGAACGACATCGGAGTAATTGTTG
CCTATGTCCTTGTTCATCTCATTCTCTCCGTCGTCACCGCTGATTGTAGA
AGATCTAATGAAAAGGCATAAGAACGTAGCTGCTCTCCTCTGACACATTT
TTCAAACGATCAGGGTTACCATCTTATTTTTCGAAATCTTTGAATCCAAT
TTGAGAAACGACTTCGGCAACTTAATCAAAAACAATTTTTACAGTTTCAG
CATTCAATTTGGATACGGGATGCATTGCAATCATGTCGTTATAAGTAGAA
TGAAGGCTCTTAATCAGAACGAAAAATATTGTCTTGGATATCTCTTCATC
TTATTTTAGTCAAAAAACTCTCCAGAGAAACGACTCGTCTTGTGGAGTAC
GTTTCATCAAACACAATACCAATGTTTTTGAAAAGAGTTCAAACGAGTCT
TCAGATATTTAACGGTTGTTTCCCAAAGTCTTGA
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