EMLSAG00000000920, EMLSAG00000000920-683686 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000920
Unique NameEMLSAG00000000920-683686
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592789954|gb|GAXK01164614.1| (TSA: Calanus finmarchicus comp599222_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.555e-1
Identity = 14/35 (40.00%), Postives = 21/35 (60.00%), Query Frame = 0
Query:   21 CHQIPGVGSFPFFIKTPVD--NAHVEKSVENVHAQ 53
             H +PG GS PF  ++PVD  NA    ++  +HA+
Sbjct: 1042 SHNLPGRGSLPFIDQSPVDSINAPTFATISAIHAR 1146          
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592757686|gb|GAXK01196727.1| (TSA: Calanus finmarchicus comp249481_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.645e-1
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0
Query:   34 IKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSS 78
            +  P DNA  +K+VEN  + +V   D  IK++ +   + +E VS+
Sbjct:  422 VNIPTDNAPADKAVENSESLVVSSDDLNIKEIIKNDEKFIESVSA 556          
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592757691|gb|GAXK01196722.1| (TSA: Calanus finmarchicus comp249481_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.717e-1
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0
Query:   34 IKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSS 78
            +  P DNA  +K+VEN  + +V   D  IK++ +   + +E VS+
Sbjct:  422 VNIPTDNAPADKAVENSESLVVSSDDLNIKEIIKNDEKFIESVSA 556          
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592757685|gb|GAXK01196728.1| (TSA: Calanus finmarchicus comp249481_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.789e-1
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0
Query:   34 IKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSS 78
            +  P DNA  +K+VEN  + +V   D  IK++ +   + +E VS+
Sbjct:  422 VNIPTDNAPADKAVENSESLVVSSDDLNIKEIIKNDEKFIESVSA 556          
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592757690|gb|GAXK01196723.1| (TSA: Calanus finmarchicus comp249481_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.870e-1
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 0
Query:   34 IKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSS 78
            +  P DNA  +K+VEN  + +V   D  IK++ +   + +E VS+
Sbjct:  422 VNIPTDNAPADKAVENSESLVVSSDDLNIKEIIKNDEKFIESVSA 556          
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592928291|gb|GAXK01030209.1| (TSA: Calanus finmarchicus comp210975_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.930e+0
Identity = 17/63 (26.98%), Postives = 32/63 (50.79%), Query Frame = 0
Query:    5 LKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQIV---LVPDAKIKK 64
            L+ C    +Q  K+QRC ++ G G    F+K P     +++ +EN    I    ++ + +I+K
Sbjct:   92 LRCCSSNRDQ--KVQRCFEVNGFGGVN-FLKNPCKYLDMDEIIENNAESIENNRMIDEQRIEK 271          
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592928292|gb|GAXK01030208.1| (TSA: Calanus finmarchicus comp210975_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.884e+0
Identity = 17/63 (26.98%), Postives = 32/63 (50.79%), Query Frame = 0
Query:    5 LKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQIV---LVPDAKIKK 64
            L+ C    +Q  K+QRC ++ G G    F+K P     +++ +EN    I    ++ + +I+K
Sbjct:  135 LRCCSSNRDQ--KVQRCFEVNGFGGVN-FLKNPCKYLDMDEIIENNAESIENNRMIDEQRIEK 314          
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Match: gi|592928293|gb|GAXK01030207.1| (TSA: Calanus finmarchicus comp210975_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.718e+0
Identity = 15/50 (30.00%), Postives = 25/50 (50.00%), Query Frame = 0
Query:    5 LKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQI 54
            L+ C    +Q  K+QRC ++ G G    F+K P     +++ +EN    I
Sbjct:  141 LRCCSSNRDQ--KVQRCFEVNGFGGVN-FLKNPCKYLDMDEIIENNAESI 281          
BLAST of EMLSAG00000000920 vs. L. salmonis peptides
Match: EMLSAP00000000920 (pep:novel supercontig:LSalAtl2s:LSalAtl2s115:757843:760876:-1 gene:EMLSAG00000000920 transcript:EMLSAT00000000920 description:"maker-LSalAtl2s115-snap-gene-7.15")

HSP 1 Score: 210.69 bits (535), Expect = 1.738e-71
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query:    1 MFGKLKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSSNTIPMFLKRVQTSLQIFNGCFPKS 102
            MFGKLKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSSNTIPMFLKRVQTSLQIFNGCFPKS
Sbjct:    1 MFGKLKSCPQKVEQYFKIQRCHQIPGVGSFPFFIKTPVDNAHVEKSVENVHAQIVLVPDAKIKKLSRETTRLVEYVSSNTIPMFLKRVQTSLQIFNGCFPKS 102          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000920 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000920 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592789954|gb|GAXK01164614.1|1.555e-140.00TSA: Calanus finmarchicus comp599222_c1_seq1 trans... [more]
gi|592757686|gb|GAXK01196727.1|1.645e-133.33TSA: Calanus finmarchicus comp249481_c0_seq6 trans... [more]
gi|592757691|gb|GAXK01196722.1|1.717e-133.33TSA: Calanus finmarchicus comp249481_c0_seq1 trans... [more]
gi|592757685|gb|GAXK01196728.1|1.789e-133.33TSA: Calanus finmarchicus comp249481_c0_seq7 trans... [more]
gi|592757690|gb|GAXK01196723.1|1.870e-133.33TSA: Calanus finmarchicus comp249481_c0_seq2 trans... [more]
gi|592928291|gb|GAXK01030209.1|2.930e+026.98TSA: Calanus finmarchicus comp210975_c2_seq2 trans... [more]
gi|592928292|gb|GAXK01030208.1|3.884e+026.98TSA: Calanus finmarchicus comp210975_c2_seq1 trans... [more]
gi|592928293|gb|GAXK01030207.1|5.718e+030.00TSA: Calanus finmarchicus comp210975_c0_seq1 trans... [more]
back to top
BLAST of EMLSAG00000000920 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009201.738e-71100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s115:75784... [more]
back to top
BLAST of EMLSAG00000000920 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000920 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000920 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000920 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s115supercontigLSalAtl2s115:757843..760876 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s115-snap-gene-7.15
NoteHypothetical protein
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000920 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000920EMLSAT00000000920-696767Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s115:757843..760876-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000920-683686 ID=EMLSAG00000000920-683686|Name=EMLSAG00000000920|organism=Lepeophtheirus salmonis|type=gene|length=3034bp|location=Sequence derived from alignment at LSalAtl2s115:757843..760876- (Lepeophtheirus salmonis)
ATGTTTGGGAAGTTGAAGTCTTGCCCTCAGAAGGTGGAGCAATATTTTAA AATTCAACGATGCCACCAAATACCAGGTGTTGGAAGTTTTCCATTTTTCA TTAAAGTAAATGTCAATCTTTGATATAATAAATAAAGTTATACAAATTAT TTAATCATATATTATTTTTCATTTGTTTTTTTGTTGCTTCAGGAAAATTC TTACGATGATCTTAACCGCTTTAGAAAATATATAAATTGATGTTTAGTTT TGATAAGGCTCTCGTTAGAATTTTGAATTATATTATATATTTTCTTAATT AACCAGAGAATTTTCTTTTAATCAGCTCGTAAATGATATCCTAGATCAGT GGCTCTCAAACTATTTAAATTAAATGTCAATGTTATATAAAATTTGGGAT GATCGTTTCTTTATAAAAAAAAACATTTTATTTGAATTTTTTTAGACAAA CTATAAAAGTATTCAGAATGGCTACCCAAAACTTTTGTTATTATTCCATG TCTCTAAGTGGAAAAACGTCGGAGCAACATCAAAAAAGGCAACGTGTGTG CGATCTCCTTCGTGCCAGTACCCATAGGGTCTGGAATAAACAAAAATTCT TCAGCAACAATATGGTTGACTTCTGGCCTGGATCCATGTGACACTCCTTT ATCCCAGACTTGGCAGTTTGGGACGTCTTGAAGAATAATGTCTGCCTCMC CTCTCATCCAAATTTAAATTGATTCGGAGCTGCCAACATGACAGTGTCNC GCTGTAGACACAGCTTTCATCGTCAAGAGGTGCTAATCTGTTCGCCAGCG CGTCAAGGCTGTTATTGATTGATATAATTTTGAATATTTTTTTGCTAAAT ATCGTATTTAAATCTATGAAAAATTAAGTTTGAGTTGTTTTTCTTTATTT CATAAAAATTATTATTATTTAATACGTTCTGCTACTACAAGTTTTGGGTA GCAACTCCGTATTACTAATTTTGACAAGAAAATTTGAGTTAGACAGGGTT TTACTCCCCCTCCTCCCAGCTCAAACCTCCACGTATCATTAAAGGTAGTT CGGACAAAGTTTGAGAACAACTGTTTAAGACAATATATTTCAAGGGTTTA TGTTTCTATTTTTTTGTTAATGAATTAATATTTTTTTGGCAAACGACGAA AAACTTGCATTCACACATCCAACGTTTGATTTTGTGATTTCAGGAATTTC TTAACCGTTAGTAAAATCTATGCAGGTGGCCTACCACATCGAGCATAAGT GTAGACGTATATACGTTTATCATTTGGAAACAGACAAATAAAAGAATCTA TTTCTAAAAACTTTGTATAATATTATTTTCAAACCATAACAACTTTCCCC TTTCAAAATATAGAAGTATTGTAATTTTAAATGTTTTTTTGTTTTGTTTT GGGGAGTGAAAATCCAATGATTAAATTTTGAAAAATTTGCCATTTTCTTT TTCCCAACCCAAGAGAATTTAAATTCACATAACAAAAACAAAGTATTTAT GAGTTACTTCTTTTCAAAGTTTTGTAGTTATTGGTAAGATTCTTGGTACT TTTTTAAATGTTATAGCAATATTAAGTATAACAATCAACTAGGGATATAT ATTTTTGACTTGTAAAGTCTATAAGTCTTGTCATTCAGTTTTCTTAAATG TGTCTTACTTGTATACTTATTCAATACAGTTCAATTTTGATAGCATAGTC CCCCCTTGTGCACAATTGATAAGATATATCCTTCCAAAAATCCCCTCTTA ACCCTTATCTATTTGATTATTTATGATGATTGTAAATCTTTAAGAAATAT CAGGCCTGACGTTTGAAGTTCAGTATCAGGACATCAGATATAATCATTTT GTATATTTGACGCAGAAATACAAAAGCTTCAAAAAAATCAAAAAATTCAC ACAGCTAATGAAACCATTAAATAATGCAATATAAGTTGTACAACATTCAT ATTTTTTAGACCACCCTAATATATAGCTATACATTTTTGAAGGAAAACTA CTTAAGAGAGTGCTGCTTGATTTTGTTTATCAATACAAAAATATTTTTCA ACAGTATACTATATTCTACTAAAACACATCTGATCAAAATGCCTAGTAAG TATATATTATAGGGATTGATAATTTAGAGGTTCTTATTTTATATATTTAT TTTTATAGACCCCTGTGGACAATGCTCATGTGGAAAAGAGTGTGGAAAAT GTTCATGCACAAATTGTACTTGTTCCGGATGCAAAAAGTAACGCACTCCT TACAATGCACATGAATTATATAATTTCGATATCATGTAATTACTTATGTA ATAAAAAACATTTATAATAAAGTATTATTATTTTTAATGAATAATTATTT ATTCTGATGTGTAAAACCGAAAACGATTTAAAAGAATTTCTTCTACCATT TTTTATGTCAATCATTCCTATACTGAAAAACTTTTGATTTTGATCTACCT TCGGAGTTACGGAATAAAAGAGTGCACAATAATAAAAAGGTATATAGATT TAAAACAAAGAGTAACCCTGAAGATTTATTATAGAGTTATAATTATAATT CTTTGTTGGACTCAAAATATGATTGAGGAACGACATCGGAGTAATTGTTG CCTATGTCCTTGTTCATCTCATTCTCTCCGTCGTCACCGCTGATTGTAGA AGATCTAATGAAAAGGCATAAGAACGTAGCTGCTCTCCTCTGACACATTT TTCAAACGATCAGGGTTACCATCTTATTTTTCGAAATCTTTGAATCCAAT TTGAGAAACGACTTCGGCAACTTAATCAAAAACAATTTTTACAGTTTCAG CATTCAATTTGGATACGGGATGCATTGCAATCATGTCGTTATAAGTAGAA TGAAGGCTCTTAATCAGAACGAAAAATATTGTCTTGGATATCTCTTCATC TTATTTTAGTCAAAAAACTCTCCAGAGAAACGACTCGTCTTGTGGAGTAC GTTTCATCAAACACAATACCAATGTTTTTGAAAAGAGTTCAAACGAGTCT TCAGATATTTAACGGTTGTTTCCCAAAGTCTTGA
back to top
Add to Basket