EMLSAG00000000922, EMLSAG00000000922-683688 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000922
Unique NameEMLSAG00000000922-683688
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000922 vs. GO
Match: - (symbol:zgc:161969 "zgc:161969" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003656 InterPro:IPR012337 Pfam:PF02892 PROSITE:PS50808 SMART:SM00614 ZFIN:ZDB-GENE-030131-2597 GO:GO:0003677 SUPFAM:SSF53098 TreeFam:TF322818 EMBL:CR854926 EMBL:CU683898 RefSeq:XP_005168772.1 UniGene:Dr.77756 Ensembl:ENSDART00000114667 GeneID:569044 KEGG:dre:569044 GeneTree:ENSGT00530000064692 OMA:TTPQFRL OrthoDB:EOG718KCZ ArrayExpress:F1RBD5 Bgee:F1RBD5 Uniprot:F1RBD5)

HSP 1 Score: 46.9802 bits (110), Expect = 8.261e-6
Identity = 25/91 (27.47%), Postives = 44/91 (48.35%), Query Frame = 0 
Query:    1 MPLVIKKQLKTPCSTQWNSLYDSYLDLPSHKD-LFDDLLQSVNLSALKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLFEAK 90
            M  +   +   PC  QW+S Y +   L +  D   ++L + + +     ++  ++ E   V  P+   LD+LQG+E   LG ++PTL   K
Sbjct:  439 MESIANMKFTLPCLNQWSSEYYAINKLMTLNDSQLNELTELLGVPHFTPDETSYLTEYTDVFKPVAFALDLLQGEEKCFLGIVIPTLLTLK 529
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BLAST of EMLSAG00000000922 vs. C. finmarchicus
Match: gi|592808665|gb|GAXK01145903.1| (TSA: Calanus finmarchicus comp6398759_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.688e-2
Identity = 19/88 (21.59%), Postives = 45/88 (51.14%), Query Frame = 0 
Query:    7 KQLKTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSALKDED---IQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLFEAKY 91
            ++LK P  T+W+S YD+ + +   KD+  +L    +  + K  D    + ++  + ++ P+   +  L+G++   + ++L  L+   Y
Sbjct:  262 RKLKNPGDTRWDSQYDTMVSVLHLKDVIKNLCDEKDDWSDKSIDRAGWKLLEGAVKILKPIKDNVKALEGEKEPTMHRVLERLYSNHY 525
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BLAST of EMLSAG00000000922 vs. C. finmarchicus
Match: gi|592953094|gb|GAXK01005459.1| (TSA: Calanus finmarchicus comp234514_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.777e+0
Identity = 20/62 (32.26%), Postives = 31/62 (50.00%), Query Frame = 0 
Query:    5 IKKQLKTPCSTQ--WNSLYDSYLDLPSHKDLFDDLLQSVNLSALKDEDIQFIKELLAVMTPM 64
            IK  L +P   Q  W+ L     DLP + DLF   LQ+V+ +  +       ++L+A + PM
Sbjct: 1258 IKDDLSSPLDFQLWWSILCSK*EDLPHYSDLFGASLQTVSQAPHQKLHFCLTQKLVACLLPM 1443
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BLAST of EMLSAG00000000922 vs. C. finmarchicus
Match: gi|592941804|gb|GAXK01016749.1| (TSA: Calanus finmarchicus comp2817258_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.401e+0
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 0 
Query:    7 KQLKTPCSTQWNSLYDSYLDL 27
            K+ K PC T+WN+ +DS + +
Sbjct:  972 KKPKNPCDTRWNAQFDSMVSI 1034
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BLAST of EMLSAG00000000922 vs. C. finmarchicus
Match: gi|592841799|gb|GAXK01115745.1| (TSA: Calanus finmarchicus comp4209729_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 9.822e+0
Identity = 12/40 (30.00%), Postives = 22/40 (55.00%), Query Frame = 0 
Query:   49 EDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLFE 88
            +DI+ +K    ++ P     DIL G+  + +  +LPTL +
Sbjct:  833 QDIRTLKVFCEILDPFAKHTDILGGENYSTVQLVLPTLLD 952
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BLAST of EMLSAG00000000922 vs. L. salmonis peptides
Match: EMLSAP00000000922 (pep:novel supercontig:LSalAtl2s:LSalAtl2s115:535375:535650:-1 gene:EMLSAG00000000922 transcript:EMLSAT00000000922 description:"snap-LSalAtl2s115-processed-gene-5.22")

HSP 1 Score: 181.8 bits (460), Expect = 1.852e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 
Query:    1 MPLVIKKQLKTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSALKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLFEAKY 91
            MPLVIKKQLKTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSALKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLFEAKY
Sbjct:    1 MPLVIKKQLKTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSALKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLFEAKY 91
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BLAST of EMLSAG00000000922 vs. Select Arthropod Genomes
Match: gb|EEC17427.1| (hypothetical protein IscW_ISCW012349, partial [Ixodes scapularis])

HSP 1 Score: 73.9442 bits (180), Expect = 1.278e-16
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0 
Query:   10 KTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSALKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLF 87
            KTPC T+WNSLYD   DL   KD   D+   +NL   ++ D+ FI E   ++ P+   L  LQ Q +   G+LLP LF
Sbjct:   51 KTPCVTRWNSLYDRMKDLLRSKDKLRDVCDGLNLQTFQERDLAFIAEYCEILQPIASALTRLQAQSDCFFGELLPKLF 128
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BLAST of EMLSAG00000000922 vs. Select Arthropod Genomes
Match: gb|EFA13333.1| (Zinc finger BED domain-containing protein 4-like Protein [Tribolium castaneum])

HSP 1 Score: 58.151 bits (139), Expect = 1.320e-10
Identity = 28/85 (32.94%), Postives = 47/85 (55.29%), Query Frame = 0 
Query:    4 VIKKQLKTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSA--LKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTL 86
            ++   L  P  T+WNSLYD+   +   KD   +L + + +    LKD +I  + +   ++ P+   +DILQG++N   G L+PTL
Sbjct:  143 ILGHTLSYPGPTRWNSLYDALTQILQEKDHLLELFEKLGIKTQMLKDTEIAILTDYCQILKPLANSIDILQGEKNTFFGYLMPTL 227
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BLAST of EMLSAG00000000922 vs. Select Arthropod Genomes
Match: gb|EFA12573.1| (hypothetical protein TcasGA2_TC004202 [Tribolium castaneum])

HSP 1 Score: 57.7658 bits (138), Expect = 1.743e-10
Identity = 28/85 (32.94%), Postives = 47/85 (55.29%), Query Frame = 0 
Query:    4 VIKKQLKTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSA--LKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTL 86
            ++   L  P  T+WNSLYD+   +   KD   +L + + +    LKD +I  + +   ++ P+   +DILQG++N   G L+PTL
Sbjct:  376 ILGHTLSYPGPTRWNSLYDALTQILQEKDHLLELFEKLGIKTQMLKDTEIAILTDYCQILKPLANSIDILQGEKNTFFGYLMPTL 460
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BLAST of EMLSAG00000000922 vs. nr
Match: gi|759032807|ref|XP_011339927.1| (PREDICTED: uncharacterized protein LOC105280145 isoform X2 [Cerapachys biroi])

HSP 1 Score: 63.5438 bits (153), Expect = 6.910e-10
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 0 
Query:    9 LKTPCSTQWNSLYDSYLD----LPSHKDLFDDLLQSVNLSALKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLFEAK 90
            LKTP  T+WNS +DS L     L +  ++ +  L   NL  L + +I+FI+E   VM P+   LDILQG+    +G LLP L   K
Sbjct:  144 LKTPVITRWNSTFDSILQIITLLKNDPEIINKCLDYCNLQRLTENEIKFIEEYCQVMKPVSQALDILQGETGMYMGYLLPVLKTVK 229
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BLAST of EMLSAG00000000922 vs. nr
Match: gi|1048068872|ref|XP_017486597.1| (PREDICTED: uncharacterized protein LOC108375037 isoform X1 [Rhagoletis zephyria])

HSP 1 Score: 63.5438 bits (153), Expect = 7.045e-10
Identity = 29/87 (33.33%), Postives = 47/87 (54.02%), Query Frame = 0 
Query:    4 VIKKQLKTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSALKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLFEAK 90
            ++   LKTP  T WNSL+DS  +L +HKD    L  ++N++     DI++++    +M P+   +D LQ +EN   G  +  L   K
Sbjct:  399 ILSSSLKTPRVTCWNSLFDSVQNLLAHKDKLSLLCTALNIAKFTPPDIEYLESYAKLMEPIASAIDFLQNEENMYFGNFIAALMSLK 485
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BLAST of EMLSAG00000000922 vs. nr
Match: gi|815765212|ref|XP_012226038.1| (PREDICTED: uncharacterized protein LOC105674340 isoform X1 [Linepithema humile])

HSP 1 Score: 63.5438 bits (153), Expect = 7.711e-10
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 0 
Query:    9 LKTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSALKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLFEAK 90
            L  PCST+WNSLYD+ + L  +K   +DL  ++NL A K+ ++++++E   +M P+   LD LQ + +   GQLLP LF  K
Sbjct:  437 LTYPCSTRWNSLYDATIQLLKYKTKLNDLNSNLNLCAFKEIELEYLEEFCLLMKPIATALDYLQKETDCFYGQLLPILFSLK 518
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BLAST of EMLSAG00000000922 vs. nr
Match: gi|795009121|ref|XP_011860187.1| (PREDICTED: uncharacterized protein LOC105557537 [Vollenhovia emeryi])

HSP 1 Score: 63.1586 bits (152), Expect = 8.642e-10
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 0 
Query:    7 KQLKTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSA-LKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTLFEAK 90
            K LK P  T+WNSL+D+  DL  H++  + L+  ++ +   KD +  +++E +AV++P+   LD LQ +     G L+PTLF  K
Sbjct:   26 KSLKYPTPTRWNSLFDALSDLLVHREKLNKLIPKLDSNVHFKDVEFNYLEECIAVLSPIALALDRLQSENECYYGILMPTLFSLK 110
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BLAST of EMLSAG00000000922 vs. nr
Match: gi|1048009482|ref|XP_017465536.1| (PREDICTED: uncharacterized protein LOC108358616 [Rhagoletis zephyria])

HSP 1 Score: 63.1586 bits (152), Expect = 9.093e-10
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 0 
Query:    4 VIKKQLKTPCSTQWNSLYDSYLDLPSHKDLFDDLLQSVNLSALKDEDIQFIKELLAVMTPMGXGLDILQGQENAMLGQLLPTL--FEAKY 91
            V+  QL+ P  T+WNSLYDS   L SHK+    L + + L+   + DI++++E L ++ P+   +  LQ     + G LLPTL    +KY
Sbjct:  193 VLGSQLQYPVVTRWNSLYDSIKGLISHKEKLSTLCEKLELTKFHESDIRYLEEYLQLLQPIADAIQFLQKDNGMVYGFLLPTLATIRSKY 282
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000922 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-8.261e-627.47symbol:zgc:161969 "zgc:161969" species:7955 "Danio... [more]
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BLAST of EMLSAG00000000922 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592808665|gb|GAXK01145903.1|2.688e-221.59TSA: Calanus finmarchicus comp6398759_c0_seq1 tran... [more]
gi|592953094|gb|GAXK01005459.1|3.777e+032.26TSA: Calanus finmarchicus comp234514_c1_seq1 trans... [more]
gi|592941804|gb|GAXK01016749.1|4.401e+042.86TSA: Calanus finmarchicus comp2817258_c0_seq1 tran... [more]
gi|592841799|gb|GAXK01115745.1|9.822e+030.00TSA: Calanus finmarchicus comp4209729_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000922 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000009221.852e-60100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s115:53537... [more]
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BLAST of EMLSAG00000000922 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000922 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 3
Match NameE-valueIdentityDescription
gb|EEC17427.1|1.278e-1642.31hypothetical protein IscW_ISCW012349, partial [Ixo... [more]
gb|EFA13333.1|1.320e-1032.94Zinc finger BED domain-containing protein 4-like P... [more]
gb|EFA12573.1|1.743e-1032.94hypothetical protein TcasGA2_TC004202 [Tribolium c... [more]
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BLAST of EMLSAG00000000922 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|759032807|ref|XP_011339927.1|6.910e-1040.70PREDICTED: uncharacterized protein LOC105280145 is... [more]
gi|1048068872|ref|XP_017486597.1|7.045e-1033.33PREDICTED: uncharacterized protein LOC108375037 is... [more]
gi|815765212|ref|XP_012226038.1|7.711e-1041.46PREDICTED: uncharacterized protein LOC105674340 is... [more]
gi|795009121|ref|XP_011860187.1|8.642e-1036.47PREDICTED: uncharacterized protein LOC105557537 [V... [more]
gi|1048009482|ref|XP_017465536.1|9.093e-1036.67PREDICTED: uncharacterized protein LOC108358616 [R... [more]

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BLAST of EMLSAG00000000922 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s115supercontigLSalAtl2s115:535375..535650 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s115-processed-gene-5.22
Biotypeprotein_coding
EvidenceIEA
Notehypothetical protein ALC57_12591 [Trachymyrmex cornetzi]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000922 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000922EMLSAT00000000922-696769Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s115:535375..535650-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000922-683688 ID=EMLSAG00000000922-683688|Name=EMLSAG00000000922|organism=Lepeophtheirus salmonis|type=gene|length=276bp|location=Sequence derived from alignment at LSalAtl2s115:535375..535650- (Lepeophtheirus salmonis)
ATGCCACTAGTTATAAAAAAACAATTGAAGACACCTTGTTCTACACAATG
GAATTCATTATATGATTCATATTTGGATCTTCCGTCTCATAAAGACTTAT
TCGACGACTTGTTACAGTCTGTAAATCTCTCTGCTCTTAAAGATGAAGAT
ATACAGTTCATTAAAGAGTTGCTGGCAGTCATGACCCCAATGGGGGKGGG
ACTTGATATTCTTCAGGGTCAGGAAAACGCCATGTTAGGACAGCTGCTTC
CAACTCTATTCGAGGCAAAATATTAA
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