EMLSAG00000001035, EMLSAG00000001035-683801 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001035
Unique NameEMLSAG00000001035-683801
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001035 vs. C. finmarchicus
Match: gi|592820743|gb|GAXK01133825.1| (TSA: Calanus finmarchicus comp7380391_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.176e+0
Identity = 11/22 (50.00%), Postives = 13/22 (59.09%), Query Frame = 0 
Query:    9 FHTSCIYTILSSMNRTGNDPFQ 30
            F   CIYT+ S +   GN PFQ
Sbjct:  188 FSLFCIYTVQSLVTEKGNGPFQ 253
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BLAST of EMLSAG00000001035 vs. C. finmarchicus
Match: gi|592929470|gb|GAXK01029075.1| (TSA: Calanus finmarchicus comp6285908_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.052e+0
Identity = 17/59 (28.81%), Postives = 24/59 (40.68%), Query Frame = 0 
Query:    8 NFHTSCIYTILSSMNRTGNDPFQIFQDGM--------KRKSKSVAPIVIPIVYRPRGMS 58
            +FHTSC   +L     TG++P     + M        KR S  + P +      PR  S
Sbjct:   21 HFHTSCSQRLLKKNLPTGHEPLHAVSNKMLSASQIQVKRSSVQIPPTLT*YSLHPRQRS 197
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BLAST of EMLSAG00000001035 vs. L. salmonis peptides
Match: EMLSAP00000001035 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1171:186125:186684:-1 gene:EMLSAG00000001035 transcript:EMLSAT00000001035 description:"maker-LSalAtl2s1171-augustus-gene-1.32")

HSP 1 Score: 172.555 bits (436), Expect = 5.232e-57
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 
Query:    1 MIKTLVSNFHTSCIYTILSSMNRTGNDPFQIFQDGMKRKSKSVAPIVIPIVYRPRGMSSRLDEIVSRNLFTSSRIHGVCRDLLR 84
            MIKTLVSNFHTSCIYTILSSMNRTGNDPFQIFQDGMKRKSKSVAPIVIPIVYRPRGMSSRLDEIVSRNLFTSSRIHGVCRDLLR
Sbjct:    1 MIKTLVSNFHTSCIYTILSSMNRTGNDPFQIFQDGMKRKSKSVAPIVIPIVYRPRGMSSRLDEIVSRNLFTSSRIHGVCRDLLR 84
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001035 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001035 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592820743|gb|GAXK01133825.1|4.176e+050.00TSA: Calanus finmarchicus comp7380391_c0_seq1 tran... [more]
gi|592929470|gb|GAXK01029075.1|6.052e+028.81TSA: Calanus finmarchicus comp6285908_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001035 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010355.232e-57100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1171:1861... [more]
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BLAST of EMLSAG00000001035 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001035 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001035 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001035 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1171supercontigLSalAtl2s1171:186125..186684 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1171-augustus-gene-1.32
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001035 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001035EMLSAT00000001035-696882Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1171:186125..186684-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001035-683801 ID=EMLSAG00000001035-683801|Name=EMLSAG00000001035|organism=Lepeophtheirus salmonis|type=gene|length=560bp|location=Sequence derived from alignment at LSalAtl2s1171:186125..186684- (Lepeophtheirus salmonis)
ATGATTAAGACTCTGGTAAGTAACTTTCATACCTCTTGTATATATACGAT
ACTCTCTTCTATGAATCGCACCGGGAATGATCCATTCCAGATCTTTCAGG
ACGGAATGAAGAGAAAGAGTAAGTCAGTAGCACCCATTGTGATTCCTATA
GTCTATGTAGGTCGGTCACAAGAAGCTATTGTACATTCATGAATTAATTA
TAACAAATGGTAATTAGTGAGTACAAGAGTTGCTATAATGTTTATTCCTT
TATTATTTAGAGACCACGTGGGATGAGCTCGCGTCTTGATGAAATTGTAT
CACGCAACCTCTTCACTTCCTCTAGAATTCACGGGTAAGTTCCGTCAATA
TTATTATGAAAGGGGCCTTAGGATGCATGATGAGACTATTTGTTATCCCT
GTCCTACAGAATTGTGGTTAATTCATTCATATTCGTGGGGAAATCGTTAA
TTATATCTGAACTTAAAAGCAACTTTTAAAATTTTTCATGAATTTTAGTT
TTCTGAATAACTAACTTACTCTATTTTTTTTTTAGGGTTTGTCGCGACCT
ACTGAGGTGA
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