EMLSAG00000001049, EMLSAG00000001049-683815 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001049 vs. GO
Match: - (symbol:lolal "lola like" species:7227 "Drosophila melanogaster" [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP] [GO:0016458 "gene silencing" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI] [GO:0031519 "PcG protein complex" evidence=IPI] [GO:0007435 "salivary gland morphogenesis" evidence=IMP] [GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP] [GO:0042803 "protein homodimerization activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0031208 "POZ domain binding" evidence=IDA] InterPro:IPR000210 InterPro:IPR013069 Pfam:PF00651 PROSITE:PS50097 SMART:SM00225 EMBL:AE013599 GO:GO:0045893 GO:GO:0042803 GO:GO:0001700 GO:GO:0003677 GO:GO:0007435 GO:GO:0003700 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GeneTree:ENSGT00530000064321 GO:GO:0000794 GO:GO:0006342 GO:GO:0005700 GO:GO:0031519 GO:GO:0007426 GO:GO:0031208 EMBL:AF308476 EMBL:AY060364 EMBL:BT099722 RefSeq:NP_001163186.1 RefSeq:NP_001246402.1 RefSeq:NP_001246403.1 RefSeq:NP_524778.1 RefSeq:NP_725756.1 RefSeq:NP_725757.1 RefSeq:NP_725758.1 UniGene:Dm.1712 ProteinModelPortal:Q7KRI2 SMR:Q7KRI2 BioGrid:69215 IntAct:Q7KRI2 PaxDb:Q7KRI2 PRIDE:Q7KRI2 EnsemblMetazoa:FBtr0086776 EnsemblMetazoa:FBtr0086777 EnsemblMetazoa:FBtr0086778 EnsemblMetazoa:FBtr0086779 EnsemblMetazoa:FBtr0300483 EnsemblMetazoa:FBtr0300484 EnsemblMetazoa:FBtr0305270 GeneID:44703 KEGG:dme:Dmel_CG5738 CTD:44703 FlyBase:FBgn0022238 eggNOG:NOG147729 InParanoid:Q7KRI2 OMA:DVPFSHL OrthoDB:EOG7RZ5RT PhylomeDB:Q7KRI2 GenomeRNAi:44703 NextBio:837561 Bgee:Q7KRI2 Uniprot:Q7KRI2) HSP 1 Score: 43.5134 bits (101), Expect = 8.407e-4 Identity = 31/108 (28.70%), Postives = 51/108 (47.22%), Query Frame = 0 Query: 27 NFNDVLLLCSGGPTGEKTFISSXRIILSXISPLLAAVLTEYSAFNHGDHEHPIVISLPDTDPKVMNFLLDFAYSGKTTVPLKYLDGISETSKRLRIKYLENAIVKVER 134 +F DV L C G + +++LS SP A+L E +HPI+I L D + +L+F Y+G+ V + L +T+ RL++K L ++R Sbjct: 31 SFTDVTLACEGQTC------KAHKMVLSACSPYFKALLEE------NPSKHPIII-LKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKGLAETPSSIKR 125
BLAST of EMLSAG00000001049 vs. C. finmarchicus
Match: gi|592883660|gb|GAXK01074715.1| (TSA: Calanus finmarchicus comp727040_c0_seq2 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.232e-2 Identity = 21/58 (36.21%), Postives = 29/58 (50.00%), Query Frame = 0 Query: 68 SAFNHGDHEHPIVISLPDTDPKVMNFLLDFAYSGKTTVPLKYLDGISETSKRLRIKYL 125 S N H HP+ + K M +LDF YSG+ VP+ LD S+ L++K L Sbjct: 73 SILNRNPHNHPL-LYFRGIMKKEMMLVLDFIYSGEAQVPMGDLDSFLRVSRDLKVKGL 243
BLAST of EMLSAG00000001049 vs. C. finmarchicus
Match: gi|592922238|gb|GAXK01036151.1| (TSA: Calanus finmarchicus comp109190_c0_seq5 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.418e-2 Identity = 17/39 (43.59%), Postives = 25/39 (64.10%), Query Frame = 0 Query: 95 LDFAYSGKTTVPLKYLDGISETSKRLRIKYLENAIVKVE 133 +DF Y+G+ +VP + LDG + RL+IK L N + K E Sbjct: 341 MDFMYNGEVSVPQEDLDGFLAAANRLKIKGLSNGLGKFE 457
BLAST of EMLSAG00000001049 vs. C. finmarchicus
Match: gi|592883661|gb|GAXK01074714.1| (TSA: Calanus finmarchicus comp727040_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.536e-2 Identity = 21/58 (36.21%), Postives = 29/58 (50.00%), Query Frame = 0 Query: 68 SAFNHGDHEHPIVISLPDTDPKVMNFLLDFAYSGKTTVPLKYLDGISETSKRLRIKYL 125 S N H HP+ + K M +LDF YSG+ VP+ LD S+ L++K L Sbjct: 73 SILNRNPHNHPL-LYFRGIMKKEMMLVLDFIYSGEAQVPMGDLDSFLRVSRDLKVKGL 243
BLAST of EMLSAG00000001049 vs. C. finmarchicus
Match: gi|592922239|gb|GAXK01036150.1| (TSA: Calanus finmarchicus comp109190_c0_seq4 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.673e-2 Identity = 17/39 (43.59%), Postives = 25/39 (64.10%), Query Frame = 0 Query: 95 LDFAYSGKTTVPLKYLDGISETSKRLRIKYLENAIVKVE 133 +DF Y+G+ +VP + LDG + RL+IK L N + K E Sbjct: 341 MDFMYNGEVSVPQEDLDGFLAAANRLKIKGLSNGLGKFE 457
BLAST of EMLSAG00000001049 vs. C. finmarchicus
Match: gi|592922241|gb|GAXK01036148.1| (TSA: Calanus finmarchicus comp109190_c0_seq2 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 2.048e-2 Identity = 17/39 (43.59%), Postives = 25/39 (64.10%), Query Frame = 0 Query: 95 LDFAYSGKTTVPLKYLDGISETSKRLRIKYLENAIVKVE 133 +DF Y+G+ +VP + LDG + RL+IK L N + K E Sbjct: 589 MDFMYNGEVSVPQEDLDGFLAAANRLKIKGLSNGLGKFE 705
BLAST of EMLSAG00000001049 vs. L. salmonis peptides
Match: EMLSAP00000001049 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1172:44967:46788:-1 gene:EMLSAG00000001049 transcript:EMLSAT00000001049 description:"augustus_masked-LSalAtl2s1172-processed-gene-0.9") HSP 1 Score: 1127.85 bits (2916), Expect = 0.000e+0 Identity = 559/559 (100.00%), Postives = 559/559 (100.00%), Query Frame = 0 Query: 1 MVESRRVRILSKKPHGSFLLANIHRHNFNDVLLLCSGGPTGEKTFISSXRIILSXISPLLAAVLTEYSAFNHGDHEHPIVISLPDTDPKVMNFLLDFAYSGKTTVPLKYLDGISETSKRLRIKYLENAIVKVERAPESLALFKSIKSPAAKKIEVKPLKEIKSKLSALVPHEQAPSAPAPAPPPPVFQPRKRTTKIRKVLIPKCTKGSTTTDLPIVDLEECKSEVLIKNDGSQVQVLRHPSSGLILQPVSQIPTHKESNHEYPIMTEQEILPQAPLTPHGSLAAVSKGFTITSPTVGVGYQGSRVLVQKSRSITLNHDGEEIIHCDKDVNCEEYEGDHHHDEYDQDYHPHDGAHYVSNEEEIHNDEVIIDNYKDVSKEVVELDESFEETIVKDSEKDNIVTSDIIKQEEVHDEFNSSDIEIEEQILPNVEEIVPNSHYSDVEEEKLIEAEDVEDVVEEIFDDDMRDRMEEGDELDSEEDMIYDDESGEEQLGKTHVNEDEASKISNCRTSGRVRKMNPRYFHEDNISSEAKSPPKESSSKKRSRTSSENFLTPLHKKKK 559 MVESRRVRILSKKPHGSFLLANIHRHNFNDVLLLCSGGPTGEKTFISSXRIILSXISPLLAAVLTEYSAFNHGDHEHPIVISLPDTDPKVMNFLLDFAYSGKTTVPLKYLDGISETSKRLRIKYLENAIVKVERAPESLALFKSIKSPAAKKIEVKPLKEIKSKLSALVPHEQAPSAPAPAPPPPVFQPRKRTTKIRKVLIPKCTKGSTTTDLPIVDLEECKSEVLIKNDGSQVQVLRHPSSGLILQPVSQIPTHKESNHEYPIMTEQEILPQAPLTPHGSLAAVSKGFTITSPTVGVGYQGSRVLVQKSRSITLNHDGEEIIHCDKDVNCEEYEGDHHHDEYDQDYHPHDGAHYVSNEEEIHNDEVIIDNYKDVSKEVVELDESFEETIVKDSEKDNIVTSDIIKQEEVHDEFNSSDIEIEEQILPNVEEIVPNSHYSDVEEEKLIEAEDVEDVVEEIFDDDMRDRMEEGDELDSEEDMIYDDESGEEQLGKTHVNEDEASKISNCRTSGRVRKMNPRYFHEDNISSEAKSPPKESSSKKRSRTSSENFLTPLHKKKK Sbjct: 1 MVESRRVRILSKKPHGSFLLANIHRHNFNDVLLLCSGGPTGEKTFISSXRIILSXISPLLAAVLTEYSAFNHGDHEHPIVISLPDTDPKVMNFLLDFAYSGKTTVPLKYLDGISETSKRLRIKYLENAIVKVERAPESLALFKSIKSPAAKKIEVKPLKEIKSKLSALVPHEQAPSAPAPAPPPPVFQPRKRTTKIRKVLIPKCTKGSTTTDLPIVDLEECKSEVLIKNDGSQVQVLRHPSSGLILQPVSQIPTHKESNHEYPIMTEQEILPQAPLTPHGSLAAVSKGFTITSPTVGVGYQGSRVLVQKSRSITLNHDGEEIIHCDKDVNCEEYEGDHHHDEYDQDYHPHDGAHYVSNEEEIHNDEVIIDNYKDVSKEVVELDESFEETIVKDSEKDNIVTSDIIKQEEVHDEFNSSDIEIEEQILPNVEEIVPNSHYSDVEEEKLIEAEDVEDVVEEIFDDDMRDRMEEGDELDSEEDMIYDDESGEEQLGKTHVNEDEASKISNCRTSGRVRKMNPRYFHEDNISSEAKSPPKESSSKKRSRTSSENFLTPLHKKKK 559
BLAST of EMLSAG00000001049 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold284_size223161-snap-gene-1.23 (protein:Tk12309 transcript:maker-scaffold284_size223161-snap-gene-1.23-mRNA-1 annotation:"dna transcription factor activity") HSP 1 Score: 50.8322 bits (120), Expect = 7.479e-7 Identity = 35/114 (30.70%), Postives = 57/114 (50.00%), Query Frame = 0 Query: 25 RHNFNDVLLLCSGGPTGEKTFISSXRIILSXISPLLAAVLTEYSAFNHGDHEHPIVISLPDTDPKVMNFLLDFAYSGKTTVPLKYLDGISETSKRLRIKYLENAIVKVERAPES 138 R++F DV L CS G T + + ++ILS +S +L +HPI+I L DT +L+FAY+G+ V + L + +T++ RIK L+ V+ P + Sbjct: 28 RNDFVDVTLACSDGST-----LDAHKVILSSVSSYFRDILKTTPC------KHPIII-LKDTGKDEAAAMLEFAYTGEVNVAQELLPSLLQTARSFRIKGLDKVESPVDAQPAT 129 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001049 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000001049 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000001049 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001049 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001049 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001049 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001049 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1172:44967..46788- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001049-683815 ID=EMLSAG00000001049-683815|Name=EMLSAG00000001049|organism=Lepeophtheirus salmonis|type=gene|length=1822bp|location=Sequence derived from alignment at LSalAtl2s1172:44967..46788- (Lepeophtheirus salmonis)back to top Add to Basket
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