EMLSAG00000001080, EMLSAG00000001080-683846 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001080
Unique NameEMLSAG00000001080-683846
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001080 vs. GO
Match: - (symbol:elB "elbow B" species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005515 "protein binding" evidence=IPI] [GO:0010629 "negative regulation of gene expression" evidence=IMP] [GO:0007424 "open tracheal system development" evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0048737 "imaginal disc-derived appendage development" evidence=IMP] [GO:0035220 "wing disc development" evidence=IMP] [GO:0035218 "leg disc development" evidence=IMP] [GO:0008283 "cell proliferation" evidence=IGI] [GO:0035214 "eye-antennal disc development" evidence=IMP] [GO:0007219 "Notch signaling pathway" evidence=IMP] InterPro:IPR007087 InterPro:IPR013087 PROSITE:PS50157 InterPro:IPR015880 GO:GO:0005634 EMBL:AE014134 GO:GO:0046872 GO:GO:0008283 GO:GO:0007219 GO:GO:0003676 GO:GO:0035220 SMART:SM00355 Gene3D:3.30.160.60 GO:GO:0010629 GO:GO:0007424 GO:GO:0035214 EMBL:AY115567 EMBL:BT001713 RefSeq:NP_995712.1 UniGene:Dm.13810 ProteinModelPortal:Q9VJS8 SMR:Q9VJS8 BioGrid:60868 IntAct:Q9VJS8 MINT:MINT-296608 PaxDb:Q9VJS8 GeneID:34844 KEGG:dme:Dmel_CG4220 CTD:34844 FlyBase:FBgn0004858 eggNOG:NOG72624 InParanoid:Q9VJS8 OMA:CSAIGAD OrthoDB:EOG7QRQTW GenomeRNAi:34844 NextBio:790505 Bgee:Q9VJS8 GO:GO:0048737 Uniprot:Q9VJS8)

HSP 1 Score: 45.4394 bits (106), Expect = 2.192e-4
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 0 
Query:  155 HICNWLFNNNQYCGQRFLSSQDLFVHLETHALS 187
            ++C+W+ ++  YCG+RF +S DLF HL TH  S
Sbjct:  562 YVCSWIGSDAAYCGKRFGTSDDLFQHLRTHTAS 594
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BLAST of EMLSAG00000001080 vs. C. finmarchicus
Match: gi|592817142|gb|GAXK01137426.1| (TSA: Calanus finmarchicus comp164745_c0_seq15 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.306e-1
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  156 ICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +CNWLF     CG+RF  S +L  HL TH
Sbjct: 1230 VCNWLF-----CGKRFTRSDELQRHLRTH 1301
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BLAST of EMLSAG00000001080 vs. C. finmarchicus
Match: gi|592817149|gb|GAXK01137419.1| (TSA: Calanus finmarchicus comp164745_c0_seq8 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.327e-1
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  156 ICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +CNWLF     CG+RF  S +L  HL TH
Sbjct: 1327 VCNWLF-----CGKRFTRSDELQRHLRTH 1398
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BLAST of EMLSAG00000001080 vs. C. finmarchicus
Match: gi|592817148|gb|GAXK01137420.1| (TSA: Calanus finmarchicus comp164745_c0_seq9 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.508e-1
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  156 ICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +CNWLF     CG+RF  S +L  HL TH
Sbjct: 1338 VCNWLF-----CGKRFTRSDELQRHLRTH 1409
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BLAST of EMLSAG00000001080 vs. C. finmarchicus
Match: gi|592817143|gb|GAXK01137425.1| (TSA: Calanus finmarchicus comp164745_c0_seq14 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.521e-1
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  156 ICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +CNWLF     CG+RF  S +L  HL TH
Sbjct: 1257 VCNWLF-----CGKRFTRSDELQRHLRTH 1328
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BLAST of EMLSAG00000001080 vs. C. finmarchicus
Match: gi|592817155|gb|GAXK01137413.1| (TSA: Calanus finmarchicus comp164745_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.529e-1
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  156 ICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +CNWLF     CG+RF  S +L  HL TH
Sbjct: 1435 VCNWLF-----CGKRFTRSDELQRHLRTH 1506
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BLAST of EMLSAG00000001080 vs. C. finmarchicus
Match: gi|592817145|gb|GAXK01137423.1| (TSA: Calanus finmarchicus comp164745_c0_seq12 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.533e-1
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  156 ICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +CNWLF     CG+RF  S +L  HL TH
Sbjct: 1308 VCNWLF-----CGKRFTRSDELQRHLRTH 1379
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BLAST of EMLSAG00000001080 vs. C. finmarchicus
Match: gi|592817150|gb|GAXK01137418.1| (TSA: Calanus finmarchicus comp164745_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.543e-1
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  156 ICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +CNWLF     CG+RF  S +L  HL TH
Sbjct: 1354 VCNWLF-----CGKRFTRSDELQRHLRTH 1425
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BLAST of EMLSAG00000001080 vs. C. finmarchicus
Match: gi|592817153|gb|GAXK01137415.1| (TSA: Calanus finmarchicus comp164745_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 3.554e-1
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  156 ICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +CNWLF     CG+RF  S +L  HL TH
Sbjct: 1405 VCNWLF-----CGKRFTRSDELQRHLRTH 1476
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BLAST of EMLSAG00000001080 vs. C. finmarchicus
Match: gi|592817141|gb|GAXK01137427.1| (TSA: Calanus finmarchicus comp164745_c0_seq16 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 4.052e-1
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  156 ICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +CNWLF     CG+RF  S +L  HL TH
Sbjct: 1227 VCNWLF-----CGKRFTRSDELQRHLRTH 1298
[Close]
BLAST of EMLSAG00000001080 vs. C. finmarchicus
Match: gi|592817146|gb|GAXK01137422.1| (TSA: Calanus finmarchicus comp164745_c0_seq11 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 4.078e-1
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = 0 
Query:  156 ICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +CNWLF     CG+RF  S +L  HL TH
Sbjct: 1324 VCNWLF-----CGKRFTRSDELQRHLRTH 1395
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BLAST of EMLSAG00000001080 vs. L. salmonis peptides
Match: EMLSAP00000001080 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:689537:690237:-1 gene:EMLSAG00000001080 transcript:EMLSAT00000001080 description:"maker-LSalAtl2s117-augustus-gene-7.32")

HSP 1 Score: 432.565 bits (1111), Expect = 2.193e-155
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 
Query:    1 MSPLRRQTLSPSLQPSSSPMALLIQTCKSIGDSLEQREHGPLLDHHPSPPSSRRVIRRRLDKQTRTHRSASSTLRLWRXPPSGCDDAFCRNAACPTHIRYQQLLSAAAGXYYYFGGVSNEDQSLLQRLQQRQRXLXAAMALASSTSSTSNVPQLHICNWLFNNNQYCGQRFLSSQDLFVHLETHALSNNGILQDNDYGYYQNNIVGPKTTSGTLP 215
            MSPLRRQTLSPSLQPSSSPMALLIQTCKSIGDSLEQREHGPLLDHHPSPPSSRRVIRRRLDKQTRTHRSASSTLRLWRXPPSGCDDAFCRNAACPTHIRYQQLLSAAAGXYYYFGGVSNEDQSLLQRLQQRQRXLXAAMALASSTSSTSNVPQLHICNWLFNNNQYCGQRFLSSQDLFVHLETHALSNNGILQDNDYGYYQNNIVGPKTTSGTLP
Sbjct:    1 MSPLRRQTLSPSLQPSSSPMALLIQTCKSIGDSLEQREHGPLLDHHPSPPSSRRVIRRRLDKQTRTHRSASSTLRLWRXPPSGCDDAFCRNAACPTHIRYQQLLSAAAGXYYYFGGVSNEDQSLLQRLQQRQRXLXAAMALASSTSSTSNVPQLHICNWLFNNNQYCGQRFLSSQDLFVHLETHALSNNGILQDNDYGYYQNNIVGPKTTSGTLP 215
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BLAST of EMLSAG00000001080 vs. L. salmonis peptides
Match: EMLSAP00000004604 (pep:novel supercontig:LSalAtl2s:LSalAtl2s23:952113:953619:-1 gene:EMLSAG00000004604 transcript:EMLSAT00000004604 description:"maker-LSalAtl2s23-augustus-gene-9.6")

HSP 1 Score: 52.7582 bits (125), Expect = 1.432e-8
Identity = 40/148 (27.03%), Postives = 63/148 (42.57%), Query Frame = 0 
Query:   55 VIRRRLDKQTRTHRSASSTLRLWRXPPSG---CDDAFCRNAACPTHIRYQQLLSAAAGXYYYFGGVSNEDQSLLQRLQQRQRXLXA---------------AMALASSTSSTSNVPQLHICNWLFNNNQYCGQRFLSSQDLFVHLETH 184
            +IR  ++  +     +S+       PP G   C D +CR+ +CPT I   QL SA AG    +  +    Q     +      L A                 A +S+  S S+    ++CNW+     YCG+R  S+++L  HL+TH
Sbjct:  193 MIRSGMEILSGAKDPSSAYANPAFRPPFGVGVCRDPYCRDPSCPTAIYNAQLASALAGLPMGYAELLQAQQKFTSAMIPGFAQLHAPSSSNSSSGGGSTTTTTASSSNGPSLSSSSGPYVCNWMNGREGYCGKRHASAEELLQHLKTH 340
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BLAST of EMLSAG00000001080 vs. Select Arthropod Genomes
Match: gb|EEZ99225.1| (no ocelli [Tribolium castaneum])

HSP 1 Score: 52.373 bits (124), Expect = 3.270e-7
Identity = 34/112 (30.36%), Postives = 54/112 (48.21%), Query Frame = 0 
Query:   84 CDDAFCRNAACPTHIRYQQLLSAAAGXYYYFGGVSNEDQSLLQRLQQRQRXLXAAMALASSTSSTSNV--PQL---HICNWLFNNNQYCGQRFLSSQDLFVHLETHALSNNG 190
            C D +C   +C   +  QQLL           G S    S   +   ++  L  AM+L       S++  PQL   ++CNW+  +  YCG+RF++S++L  HL TH   ++G
Sbjct:  279 CKDPYC--TSCQFSMHNQQLL---------MSGASGPCPSGCTQCDHQKYNLAMAMSLVPPGPVPSSLAYPQLGRPYVCNWIAGDT-YCGKRFVTSEELLQHLRTHTSGSDG 378
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001080 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-2.192e-448.48symbol:elB "elbow B" species:7227 "Drosophila mela... [more]
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BLAST of EMLSAG00000001080 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 22
Match NameE-valueIdentityDescription
gi|592817142|gb|GAXK01137426.1|3.306e-151.72TSA: Calanus finmarchicus comp164745_c0_seq15 tran... [more]
gi|592817149|gb|GAXK01137419.1|3.327e-151.72TSA: Calanus finmarchicus comp164745_c0_seq8 trans... [more]
gi|592817148|gb|GAXK01137420.1|3.508e-151.72TSA: Calanus finmarchicus comp164745_c0_seq9 trans... [more]
gi|592817143|gb|GAXK01137425.1|3.521e-151.72TSA: Calanus finmarchicus comp164745_c0_seq14 tran... [more]
gi|592817155|gb|GAXK01137413.1|3.529e-151.72TSA: Calanus finmarchicus comp164745_c0_seq2 trans... [more]
gi|592817145|gb|GAXK01137423.1|3.533e-151.72TSA: Calanus finmarchicus comp164745_c0_seq12 tran... [more]
gi|592817150|gb|GAXK01137418.1|3.543e-151.72TSA: Calanus finmarchicus comp164745_c0_seq7 trans... [more]
gi|592817153|gb|GAXK01137415.1|3.554e-151.72TSA: Calanus finmarchicus comp164745_c0_seq4 trans... [more]
gi|592817141|gb|GAXK01137427.1|4.052e-151.72TSA: Calanus finmarchicus comp164745_c0_seq16 tran... [more]
gi|592817146|gb|GAXK01137422.1|4.078e-151.72TSA: Calanus finmarchicus comp164745_c0_seq11 tran... [more]

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BLAST of EMLSAG00000001080 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000010802.193e-155100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s117:68953... [more]
EMLSAP000000046041.432e-827.03pep:novel supercontig:LSalAtl2s:LSalAtl2s23:952113... [more]
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BLAST of EMLSAG00000001080 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001080 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
gb|EEZ99225.1|3.270e-730.36no ocelli [Tribolium castaneum][more]
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BLAST of EMLSAG00000001080 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001080 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s117supercontigLSalAtl2s117:689537..690237 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s117-augustus-gene-7.32
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001080 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001080EMLSAT00000001080-696927Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s117:689537..690237-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001080-683846 ID=EMLSAG00000001080-683846|Name=EMLSAG00000001080|organism=Lepeophtheirus salmonis|type=gene|length=701bp|location=Sequence derived from alignment at LSalAtl2s117:689537..690237- (Lepeophtheirus salmonis)
ATGAGTCCTCTTCGTCGCCAGACTCTGTCTCCGTCCCTCCAGCCTTCTTC
TTCTCCTATGGCCCTCCTTATACAAACATGCAAATCCATAGGAGACTCCC
TTGAACAAAGGGAACATGGACCATTATTGGATCACCACCCTTCACCTCCT
TCTTCACGAAGAGTGATTCGTAGACGATTAGATAAGCAAACACGGACGCA
TAGATCGGCTTCTAGTACGCTGAGGCTATGGCGGSATCCTCCGAGTGGAT
GTGACGACGCCTTTTGTCGAAATGCGGCATGTCCAACACATATACGTTAT
CAACAGCTTTTATCAGCTGCCGCAGGGMCGTATTACTACTTTGGGGGAGT
TTCAAATGAGGACCAGAGCTTGCTTCAAAGGCTTCAGCAACGACAAAGAK
CGCTCSCTGCCGCAATGGCCCTAGCCTCGTCTACTTCCTCCACTTCGAAT
GTACCTCAACTCCATATTTGTAATTGGCTATTTAATAGTAAGCTATTTTT
CTATTTTCAATTCATGAAGTTTAATTATTTTCCATATTTTTAGATAATCA
GTATTGCGGACAAAGGTTCCTCTCTTCCCAAGACTTATTTGTACATCTCG
AAACCCATGCATTGTCAAATAATGGAATACTACAAGACAATGACTATGGT
TACTATCAAAATAATATAGTCGGCCCAAAGACGACATCCGGAACACTTCC
C
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