EMLSAG00000001081, EMLSAG00000001081-683847 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001081
Unique NameEMLSAG00000001081-683847
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592794601|gb|GAXK01159967.1| (TSA: Calanus finmarchicus comp629736_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 3.567e-7
Identity = 25/70 (35.71%), Postives = 36/70 (51.43%), Query Frame = 0 
Query:    3 RFMVLLLVVGLVYSEAKPWI-QGVDLSLPREVDPENPIQAHPDDCKVFYVYNYPMTCGEELVFSQESLSC 71
            R   LL  + L    A  W      L +P+EVD +  I+  P++C V+Y    P+TCGE   F++ SL C
Sbjct:   29 RLESLLCFISLA-GIASAWTPSDAALDIPQEVDVDQRIRPDPNNCNVYYYLKVPLTCGEGNAFNKASLRC 235
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592794602|gb|GAXK01159966.1| (TSA: Calanus finmarchicus comp629736_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 3.742e-7
Identity = 25/70 (35.71%), Postives = 36/70 (51.43%), Query Frame = 0 
Query:    3 RFMVLLLVVGLVYSEAKPWI-QGVDLSLPREVDPENPIQAHPDDCKVFYVYNYPMTCGEELVFSQESLSC 71
            R   LL  + L    A  W      L +P+EVD +  I+  P++C V+Y    P+TCGE   F++ SL C
Sbjct:   29 RLESLLCFISLA-GIASAWTPSDAALDIPQEVDVDQRIRPDPNNCNVYYYLKVPLTCGEGNAFNKASLRC 235
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592937709|gb|GAXK01020844.1| (TSA: Calanus finmarchicus comp13199_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.846e-2
Identity = 20/47 (42.55%), Postives = 26/47 (55.32%), Query Frame = 0 
Query:   40 QAHPDDCKVFYV------YNYPMTCGEELVFSQESLSCVPKEKRPEC 80
             AHP DC  FYV      YN   +C + LVFS+E  +C+  E+ P C
Sbjct:  775 HAHPTDCGKFYVCLPNGTYNK-ASCDKPLVFSEEKGACLEAEEVPGC 912
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592930242|gb|GAXK01028303.1| (TSA: Calanus finmarchicus comp5791123_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 3.837e-1
Identity = 10/28 (35.71%), Postives = 18/28 (64.29%), Query Frame = 0 
Query:   17 EAKPWIQGVDLSLPREVDPENPIQAHPD 44
            + KP +   +L+ P++  P NPIQ +P+
Sbjct:  340 QNKPNLSKTNLTYPKQTKPSNPIQTYPN 423
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592857532|gb|GAXK01100030.1| (TSA: Calanus finmarchicus comp6832_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 5.361e-1
Identity = 21/78 (26.92%), Postives = 35/78 (44.87%), Query Frame = 0 
Query:    9 LVVGLVYSEAKPW-IQGVDLSLPREVDPENPIQAHPDDCKVFYVYNY-----PMTCGEELVFSQESLSCVPKEKRPEC 80
            L  G V++E   +   G D+  P+ +   +PI  HP DC+ ++   +        C    VF + +  C P E+  EC
Sbjct:  474 LCEGSVFNEIDGFSCPGGDIVGPQNLLQAHPIHPHPTDCQYYFSCYHNKEPNKFGCSTGNVFDRLTQVCKPAEEVAEC 707
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592912759|gb|GAXK01045616.1| (TSA: Calanus finmarchicus comp735260_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.381e+0
Identity = 24/65 (36.92%), Postives = 32/65 (49.23%), Query Frame = 0 
Query:   19 KPWIQGVD---LSLPREVDP-ENPIQAHPDDCKVFYV----YNYPMTCGEELVFSQESLSCVPKE 75
            +P  Q  D    S P EV P E+P    P DC+ FYV      +  +C E LVF   +L+C  +E
Sbjct:  531 RPGCQSKDKFEFSCP-EVGPSEHPRYPDPADCQKFYVCISGSAHHSSCNEGLVFHPLTLACDRQE 722
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592912760|gb|GAXK01045615.1| (TSA: Calanus finmarchicus comp735260_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 3.586e+0
Identity = 24/65 (36.92%), Postives = 32/65 (49.23%), Query Frame = 0 
Query:   19 KPWIQGVD---LSLPREVDP-ENPIQAHPDDCKVFYV----YNYPMTCGEELVFSQESLSCVPKE 75
            +P  Q  D    S P EV P E+P    P DC+ FYV      +  +C E LVF   +L+C  +E
Sbjct:  531 RPGCQSKDKFEFSCP-EVGPSEHPRYPDPADCQKFYVCISGSAHHSSCNEGLVFHPLTLACDRQE 722
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592937708|gb|GAXK01020845.1| (TSA: Calanus finmarchicus comp13199_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.967e+0
Identity = 17/47 (36.17%), Postives = 23/47 (48.94%), Query Frame = 0 
Query:   40 QAHPDDCKVFYV------YNYPMTCGEELVFSQESLSCVPKEKRPEC 80
             A P DC  FYV      YN   +C +  VFS++  +C+  E  P C
Sbjct:  772 HADPKDCGKFYVCLPNGTYNK-ASCDKPRVFSEDKGACLEAEDVPGC 909
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592932207|gb|GAXK01026346.1| (TSA: Calanus finmarchicus comp19022_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 7.984e+0
Identity = 15/45 (33.33%), Postives = 22/45 (48.89%), Query Frame = 0 
Query:   41 AHPDDCKVFYVYN----YPMTCGEELVFSQESLSCVPKEKRPECA 81
            A P+DC VF+           C   L FSQ++  C+   + PEC+
Sbjct:  342 ADPEDCGVFWNCQDGKANRYECPPGLAFSQDTHGCLWASEVPECS 476
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592935380|gb|GAXK01023173.1| (TSA: Calanus finmarchicus comp115025_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 8.512e+0
Identity = 20/75 (26.67%), Postives = 33/75 (44.00%), Query Frame = 0 
Query:    1 MYRFMVLLLVVGLVYSEAKPWIQGVDLSLPREVDPENPIQAHPDDCKVFY--VYNYPM--TCGEELVFSQESLSC 71
            M  F ++  + GL+    K      D   P E         HP+DC ++Y  V+  P+  +C   LV+S +  +C
Sbjct: 1573 MSPFFIIFALFGLLPGNIK-----TDFRCPEEFG----YYQHPEDCSLYYVCVFGGPLLESCTGGLVYSHDLQTC 1770
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BLAST of EMLSAG00000001081 vs. L. salmonis peptides
Match: EMLSAP00000001081 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:715360:716166:1 gene:EMLSAG00000001081 transcript:EMLSAT00000001081 description:"maker-LSalAtl2s117-augustus-gene-7.26")

HSP 1 Score: 168.703 bits (426), Expect = 1.301e-55
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 
Query:    1 MYRFMVLLLVVGLVYSEAKPWIQGVDLSLPREVDPENPIQAHPDDCKVFYVYNYPMTCGEELVFSQESLSCVPKEKRPECA 81
            MYRFMVLLLVVGLVYSEAKPWIQGVDLSLPREVDPENPIQAHPDDCKVFYVYNYPMTCGEELVFSQESLSCVPKEKRPECA
Sbjct:    1 MYRFMVLLLVVGLVYSEAKPWIQGVDLSLPREVDPENPIQAHPDDCKVFYVYNYPMTCGEELVFSQESLSCVPKEKRPECA 81
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BLAST of EMLSAG00000001081 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold556_size137522-snap-gene-0.33 (protein:Tk02036 transcript:maker-scaffold556_size137522-snap-gene-0.33-mRNA-1 annotation:"PREDICTED: hemocytin-like")

HSP 1 Score: 109.768 bits (273), Expect = 1.513e-33
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0 
Query:    2 YRFMVLLLVVGLVYSE--AKPWIQGVDLSLPREVDPENPIQAHPDDCKVFYVYNYPMTCGEELVFSQESLSCVPK---EKRPECA 81
            +  +  +L + L+ ++  AKPWIQGV+L LPREVDPE+PI AHPDDC VFY+YNYPMTCGEELVF+ ++L+C P      RPECA
Sbjct:   10 FLTLTFILALSLITTQIQAKPWIQGVELDLPREVDPESPIVAHPDDCHVFYMYNYPMTCGEELVFNPDTLACEPAANVSSRPECA 94
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001081 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592794601|gb|GAXK01159967.1|3.567e-735.71TSA: Calanus finmarchicus comp629736_c0_seq2 trans... [more]
gi|592794602|gb|GAXK01159966.1|3.742e-735.71TSA: Calanus finmarchicus comp629736_c0_seq1 trans... [more]
gi|592937709|gb|GAXK01020844.1|2.846e-242.55TSA: Calanus finmarchicus comp13199_c0_seq1 transc... [more]
gi|592930242|gb|GAXK01028303.1|3.837e-135.71TSA: Calanus finmarchicus comp5791123_c0_seq1 tran... [more]
gi|592857532|gb|GAXK01100030.1|5.361e-126.92TSA: Calanus finmarchicus comp6832_c0_seq1 transcr... [more]
gi|592912759|gb|GAXK01045616.1|3.381e+036.92TSA: Calanus finmarchicus comp735260_c0_seq2 trans... [more]
gi|592912760|gb|GAXK01045615.1|3.586e+036.92TSA: Calanus finmarchicus comp735260_c0_seq1 trans... [more]
gi|592937708|gb|GAXK01020845.1|4.967e+036.17TSA: Calanus finmarchicus comp13199_c0_seq2 transc... [more]
gi|592932207|gb|GAXK01026346.1|7.984e+033.33TSA: Calanus finmarchicus comp19022_c0_seq1 transc... [more]
gi|592935380|gb|GAXK01023173.1|8.512e+026.67TSA: Calanus finmarchicus comp115025_c0_seq1 trans... [more]

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BLAST of EMLSAG00000001081 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010811.301e-55100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s117:71536... [more]
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BLAST of EMLSAG00000001081 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001081 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001081 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001081 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold556_size137522-snap-gene-0.331.513e-3360.00protein:Tk02036 transcript:maker-scaffold556_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s117supercontigLSalAtl2s117:715360..716166 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s117-augustus-gene-7.26
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001081 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001081EMLSAT00000001081-696928Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s117:715360..716166+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001081-683847 ID=EMLSAG00000001081-683847|Name=EMLSAG00000001081|organism=Lepeophtheirus salmonis|type=gene|length=807bp|location=Sequence derived from alignment at LSalAtl2s117:715360..716166+ (Lepeophtheirus salmonis)
TTTGAAGAAGAAAATACTATTTTTATTATTGAAGACGATCATCATATTGT
TTTTAAGTATAAAAGTTCTTGTTAGCTTCACTAAAGGATTTCAGTTAGGA
TTGATGATAACATGTATCGGTTCATGGTTTTACTATTGGTCGTAGGGTTG
GTATACTCAGAGGCCAAGCCCTGGATACAAGGAGTTGGTAAGTGAAGTAT
GTACATAATAATCATGTATGTACTATTTCCACACATCTTTTTGTCAATCA
TTAATTAATTAACGTTTATTAGATCTTTCGCTTCCAAGAGAAGTGGATCC
AGAGAATCCTATTCAAGCTCATCCCGACGACTGCAAAGTATTTTACGTAT
ACAATTATCCCATGACTTGCGGAGAGGAGTTGGTCTTTTCACAAGAGTCT
CTAAGCTGTGTTCCCAAAGAAAAGCGGCCAGAGTGTGCTTAGATATTAAA
TTCCATAAATAGCCATGAAATATATAAATTGTTATCTACTTAACATAATG
AATTTGAACTCTTCTGAACTGTATATTAATGTAAACAAACAAATAAAAAA
GAAGCTATATTGGTCACATTCATGGATGATAACTGCTCAATATGGTCTTA
CAAATGGTTGAATATACATATTTATTATTAAAGAAAAGAGTAACTGAATA
ATTTGATATTAAACAGTCTTATCAATTAATGTAAATATTAGTGATGGGAC
GATTGATCGGAATCGGCATTGGTAAAATTTGTGATTCTGATTCTTATTTA
TTGCTGGTACTTATCTATTTAATACTTTTCTAAGTTACGAAAAAAAATAG
CACCCCC
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