EMLSAG00000001081, EMLSAG00000001081-683847 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001081
Unique NameEMLSAG00000001081-683847
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592795501|gb|GAXK01159067.1| (TSA: Calanus finmarchicus comp4241634_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 9.608e+0
Identity = 14/36 (38.89%), Postives = 21/36 (58.33%), Query Frame = 0 
Query:   48 VFYVYNYP--MTCGEELVFSQESLSCVPKEKRPECA 81
            V  VY+YP  + CG   VF++ +L C   +  P+CA
Sbjct:  211 VTCVYDYPRLLNCGYGSVFNEYTLGCDDPKNVPKCA 318
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Match: gi|592944389|gb|GAXK01014164.1| (TSA: Calanus finmarchicus comp9895_c7_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 9.670e+0
Identity = 15/48 (31.25%), Postives = 22/48 (45.83%), Query Frame = 0 
Query:   46 CKVFYVYN--------------YPMTCGEELVFSQESLSC-VPKEKRP 78
            CKVF++ N              Y   CGE   F Q++L+C  P++  P
Sbjct:  281 CKVFHICNPVYDNDGVVERMDKYSFVCGEGTQFDQQTLTCNFPEDAFP 424
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BLAST of EMLSAG00000001081 vs. L. salmonis peptides
Match: EMLSAP00000001081 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:715360:716166:1 gene:EMLSAG00000001081 transcript:EMLSAT00000001081 description:"maker-LSalAtl2s117-augustus-gene-7.26")

HSP 1 Score: 168.703 bits (426), Expect = 1.301e-55
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 
Query:    1 MYRFMVLLLVVGLVYSEAKPWIQGVDLSLPREVDPENPIQAHPDDCKVFYVYNYPMTCGEELVFSQESLSCVPKEKRPECA 81
            MYRFMVLLLVVGLVYSEAKPWIQGVDLSLPREVDPENPIQAHPDDCKVFYVYNYPMTCGEELVFSQESLSCVPKEKRPECA
Sbjct:    1 MYRFMVLLLVVGLVYSEAKPWIQGVDLSLPREVDPENPIQAHPDDCKVFYVYNYPMTCGEELVFSQESLSCVPKEKRPECA 81
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BLAST of EMLSAG00000001081 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold556_size137522-snap-gene-0.33 (protein:Tk02036 transcript:maker-scaffold556_size137522-snap-gene-0.33-mRNA-1 annotation:"PREDICTED: hemocytin-like")

HSP 1 Score: 109.768 bits (273), Expect = 1.513e-33
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0 
Query:    2 YRFMVLLLVVGLVYSE--AKPWIQGVDLSLPREVDPENPIQAHPDDCKVFYVYNYPMTCGEELVFSQESLSCVPK---EKRPECA 81
            +  +  +L + L+ ++  AKPWIQGV+L LPREVDPE+PI AHPDDC VFY+YNYPMTCGEELVF+ ++L+C P      RPECA
Sbjct:   10 FLTLTFILALSLITTQIQAKPWIQGVELDLPREVDPESPIVAHPDDCHVFYMYNYPMTCGEELVFNPDTLACEPAANVSSRPECA 94
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001081 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001081 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592795501|gb|GAXK01159067.1|9.608e+038.89TSA: Calanus finmarchicus comp4241634_c0_seq1 tran... [more]
gi|592944389|gb|GAXK01014164.1|9.670e+031.25TSA: Calanus finmarchicus comp9895_c7_seq2 transcr... [more]

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BLAST of EMLSAG00000001081 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010811.301e-55100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s117:71536... [more]
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BLAST of EMLSAG00000001081 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001081 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001081 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001081 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold556_size137522-snap-gene-0.331.513e-3360.00protein:Tk02036 transcript:maker-scaffold556_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s117supercontigLSalAtl2s117:715360..716166 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s117-augustus-gene-7.26
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001081 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001081EMLSAT00000001081-696928Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s117:715360..716166+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001081-683847 ID=EMLSAG00000001081-683847|Name=EMLSAG00000001081|organism=Lepeophtheirus salmonis|type=gene|length=807bp|location=Sequence derived from alignment at LSalAtl2s117:715360..716166+ (Lepeophtheirus salmonis)
TTTGAAGAAGAAAATACTATTTTTATTATTGAAGACGATCATCATATTGT
TTTTAAGTATAAAAGTTCTTGTTAGCTTCACTAAAGGATTTCAGTTAGGA
TTGATGATAACATGTATCGGTTCATGGTTTTACTATTGGTCGTAGGGTTG
GTATACTCAGAGGCCAAGCCCTGGATACAAGGAGTTGGTAAGTGAAGTAT
GTACATAATAATCATGTATGTACTATTTCCACACATCTTTTTGTCAATCA
TTAATTAATTAACGTTTATTAGATCTTTCGCTTCCAAGAGAAGTGGATCC
AGAGAATCCTATTCAAGCTCATCCCGACGACTGCAAAGTATTTTACGTAT
ACAATTATCCCATGACTTGCGGAGAGGAGTTGGTCTTTTCACAAGAGTCT
CTAAGCTGTGTTCCCAAAGAAAAGCGGCCAGAGTGTGCTTAGATATTAAA
TTCCATAAATAGCCATGAAATATATAAATTGTTATCTACTTAACATAATG
AATTTGAACTCTTCTGAACTGTATATTAATGTAAACAAACAAATAAAAAA
GAAGCTATATTGGTCACATTCATGGATGATAACTGCTCAATATGGTCTTA
CAAATGGTTGAATATACATATTTATTATTAAAGAAAAGAGTAACTGAATA
ATTTGATATTAAACAGTCTTATCAATTAATGTAAATATTAGTGATGGGAC
GATTGATCGGAATCGGCATTGGTAAAATTTGTGATTCTGATTCTTATTTA
TTGCTGGTACTTATCTATTTAATACTTTTCTAAGTTACGAAAAAAAATAG
CACCCCC
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