EMLSAG00000001085, EMLSAG00000001085-683851 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001085
Unique NameEMLSAG00000001085-683851
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001085 vs. C. finmarchicus
Match: gi|592751221|gb|GAXK01203192.1| (TSA: Calanus finmarchicus comp1729363_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 3.161e-4
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 0 
Query:  132 ESYQKELSLLRQKLSDSQIANRNLETYIEYLKKSYVSVFGSV 173
            E  + E+  L+++L+  Q  N+ LETYI +LK+SY SVFG +
Sbjct: 1661 EKLKMEVDNLKRQLTQGQDTNQTLETYIAFLKQSYTSVFGPI 1786
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BLAST of EMLSAG00000001085 vs. C. finmarchicus
Match: gi|592925422|gb|GAXK01032993.1| (TSA: Calanus finmarchicus comp314116_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 3.912e+0
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 0 
Query:   67 KLREAGKKIEDILEQNSLLTQRLKE 91
            K RE   KIEDI+E+N ++ Q+L E
Sbjct:  127 KFRENQNKIEDIVEENKVIAQKLDE 201
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BLAST of EMLSAG00000001085 vs. L. salmonis peptides
Match: EMLSAP00000001085 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:772129:772662:1 gene:EMLSAG00000001085 transcript:EMLSAT00000001085 description:"augustus_masked-LSalAtl2s117-processed-gene-7.4")

HSP 1 Score: 354.369 bits (908), Expect = 1.200e-125
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0 
Query:    1 MASSFKKVHHQPKRKKKRTKNGVSDLSSKETTILAEETDSKVLKTAIMQLRNENECLKSALSXREXKLREAGKKIEDILEQNSLLTQRLKEIIFNGNVQTSNSTTTGGPPPNMGSTTTLELKAFNNGNHPKESYQKELSLLRQKLSDSQIANRNLETYIEYLKKSYVSVFGSVVTST 177
            MASSFKKVHHQPKRKKKRTKNGVSDLSSKETTILAEETDSKVLKTAIMQLRNENECLKSALSXREXKLREAGKKIEDILEQNSLLTQRLKEIIFNGNVQTSNSTTTGGPPPNMGSTTTLELKAFNNGNHPKESYQKELSLLRQKLSDSQIANRNLETYIEYLKKSYVSVFGSVVTST
Sbjct:    1 MASSFKKVHHQPKRKKKRTKNGVSDLSSKETTILAEETDSKVLKTAIMQLRNENECLKSALSXREXKLREAGKKIEDILEQNSLLTQRLKEIIFNGNVQTSNSTTTGGPPPNMGSTTTLELKAFNNGNHPKESYQKELSLLRQKLSDSQIANRNLETYIEYLKKSYVSVFGSVVTST 177
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001085 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001085 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592751221|gb|GAXK01203192.1|3.161e-445.24TSA: Calanus finmarchicus comp1729363_c0_seq1 tran... [more]
gi|592925422|gb|GAXK01032993.1|3.912e+052.00TSA: Calanus finmarchicus comp314116_c1_seq1 trans... [more]
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BLAST of EMLSAG00000001085 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010851.200e-125100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s117:77212... [more]
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BLAST of EMLSAG00000001085 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001085 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001085 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001085 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s117supercontigLSalAtl2s117:772129..772662 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s117-processed-gene-7.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001085 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001085EMLSAT00000001085-696932Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s117:772129..772662+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001085-683851 ID=EMLSAG00000001085-683851|Name=EMLSAG00000001085|organism=Lepeophtheirus salmonis|type=gene|length=534bp|location=Sequence derived from alignment at LSalAtl2s117:772129..772662+ (Lepeophtheirus salmonis)
ATGGCCTCATCTTTCAAAAAAGTACATCATCAGCCTAAACGGAAGAAAAA
ACGTACAAAAAATGGAGTATCCGACCTGAGCAGCAAGGAAACAACCATTC
TTGCTGAAGAAACGGATTCAAAGGTTCTAAAAACAGCCATAATGCAGCTT
CGAAACGAAAATGAATGTCTTAAATCCGCKCTCTCTGNAAGAGAGTGKAA
GCTTCGAGAAGCAGGTAAAAAGATCGAAGATATCCTGGAGCAGAACTCTC
TTCTCACTCAAAGATTAAAAGAGATCATATTCAATGGGAACGTGCAGACA
TCAAACTCGACAACAACAGGTGGACCACCACCAAATATGGGTAGTACAAC
TACCTTGGAGTTGAAAGCGTTTAATAATGGGAATCATCCCAAAGAATCAT
ATCAAAAAGAACTCTCTCTCCTTCGACAAAAATTATCAGACAGTCAAATT
GCTAATCGAAACCTGGAAACGTATATTGAGTATTTGAAAAAATCATATGT
GTCTGTATTTGGATCTGTAGTTACGAGTACCTAA
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