EMLSAG00000001088, EMLSAG00000001088-683854 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001088
Unique NameEMLSAG00000001088-683854
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001088 vs. C. finmarchicus
Match: gi|592893469|gb|GAXK01064906.1| (TSA: Calanus finmarchicus comp988157_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 8.599e-1
Identity = 18/49 (36.73%), Postives = 23/49 (46.94%), Query Frame = 0 
Query:   43 DPNLEAYAESKGLVSSSLWISSRRGLISGVFGFSDRSSDTRSALLRHSF 91
            DP +    E  G V++  WI     LIS  F +S +  DTR   L HS 
Sbjct: 1138 DPLVHNLDEHLGYVTNIEWIPGTDKLISSSFDYSLKIWDTRKGELLHSL 1284
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BLAST of EMLSAG00000001088 vs. C. finmarchicus
Match: gi|592842411|gb|GAXK01115133.1| (TSA: Calanus finmarchicus comp736561_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.650e+0
Identity = 20/54 (37.04%), Postives = 28/54 (51.85%), Query Frame = 0 
Query:   42 PDPNLEAYAESKGLVSSSLWISSRRGLISGVFGF----SDRSSDTRSALLRHSF 91
            P P  +  ++S GL S +LW S R  +ISG F       +++S T SAL   S 
Sbjct:  732 PSPLEDVKSQSTGLSSRTLWPSQR--IISGHFNL*QIRMEKTSSTTSALHNQSM 887
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BLAST of EMLSAG00000001088 vs. L. salmonis peptides
Match: EMLSAP00000001088 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:776184:777517:1 gene:EMLSAG00000001088 transcript:EMLSAT00000001088 description:"maker-LSalAtl2s117-snap-gene-7.39")

HSP 1 Score: 229.565 bits (584), Expect = 1.873e-78
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MEARIVAWLRGVGDRGEGLLVLLIGGGELDTKPLKYLLISIPDPNLEAYAESKGLVSSSLWISSRRGLISGVFGFSDRSSDTRSALLRHSFISRLRFSVMKGGRMGLPHTRITEINV 117
            MEARIVAWLRGVGDRGEGLLVLLIGGGELDTKPLKYLLISIPDPNLEAYAESKGLVSSSLWISSRRGLISGVFGFSDRSSDTRSALLRHSFISRLRFSVMKGGRMGLPHTRITEINV
Sbjct:    1 MEARIVAWLRGVGDRGEGLLVLLIGGGELDTKPLKYLLISIPDPNLEAYAESKGLVSSSLWISSRRGLISGVFGFSDRSSDTRSALLRHSFISRLRFSVMKGGRMGLPHTRITEINV 117
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001088 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001088 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592893469|gb|GAXK01064906.1|8.599e-136.73TSA: Calanus finmarchicus comp988157_c0_seq1 trans... [more]
gi|592842411|gb|GAXK01115133.1|4.650e+037.04TSA: Calanus finmarchicus comp736561_c0_seq1 trans... [more]
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BLAST of EMLSAG00000001088 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010881.873e-78100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s117:77618... [more]
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BLAST of EMLSAG00000001088 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001088 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001088 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001088 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s117supercontigLSalAtl2s117:776184..777517 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s117-snap-gene-7.39
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001088 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001088EMLSAT00000001088-696935Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s117:776184..777517+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001088-683854 ID=EMLSAG00000001088-683854|Name=EMLSAG00000001088|organism=Lepeophtheirus salmonis|type=gene|length=1334bp|location=Sequence derived from alignment at LSalAtl2s117:776184..777517+ (Lepeophtheirus salmonis)
ATGGAGGCACGAATAGTGGCGTGGTTAAGAGGAGTAGGAGACAGGGGGGA
AGGTTTATTAGTACTATTAATTGGAGGTGGAGAGTTGGACACAAAGCCAC
TTAAATATCTTTTAATCTCCATTCCTGATCCAAATCTGGAGGCGTATGCT
GAGAGCAAAGGGCTAGTTTCTTCTTCGCTTTGGATATCGTCGAGACGAGG
GTTGATCTCAGGGGTTTTTGGTTTTTCAGATAGAAGCTCAGATACACGAA
GTGCCTTATTACGCCACTCTTTCATTTCCCGCCTCCGATTCTCGGTCATG
AAAGGAGGTAGAATGGGTCTACCACACACTCGGATTACTGAGATGTAATC
TTCAGGGACAAGGACTGCAGACATCGTTTCTGGAAAGGTATTAACAGGAT
ATAATTTACAAACAATTTTGAAACGCGTACGTTAGAGTATTTATTTATTA
ATGGAACGGAATATTTGATTAATTGACAGATTCTATATTGAGTTTGAAAG
AATAGGTAACAGTCTCACGCAAGAATACAAACAAGGAACAAGTGGCAATG
GAGCAGGGGTGACAAATGAAATCCCTCCATAAAATCAATCCGTCCATAAC
CACGTACTTCACATCACTACCCTCCTTTATAGTCCTTTCTAATCAATAGT
TATCACTCTATTTCAATTATTCATATATCATTATTCATTAATATTCTCTC
ATGCATGCAAAATGTAGACAGCTAGCGATCCCATCCATTACATATATGTG
GCCTGTCAACACACAAAAAAACCAAAACTAGAAGGATTCTTCTTAAAATT
GAATGTGCGTTCTATATTTTGTATTCTCCGATTAATCATCGTCAATTTCT
ATCAACAAGGATTATTCATATTAATCCTTTGGGTGTGCCACAAATGACAC
TTAAGAGTAGCCAAAATTAATCGTCGTAATAAAAAAATGATTTTGTATGA
AAGGGGTTGTATTGGGGCCAATATAAGTTTATTTAATCAAATAAAGATTC
TAAAGCTCTTTGGTATCTTAACTCATCCCGCAAATTTGAATAAATAGACT
ATTACATTAAATTTTAGGTACTTGGACTTAATTTCGAAGGATTAAGTGTC
GAAGGGACAACTTGTTTTTAAGACTTTTATAGGAATACATTTGCAGATAC
TTTCAAATTGAACTTACAACAAAAATGATAGTAACTCGATCATTCTTAAA
ATAAGTTTTTATTCCTAAAAAACATAAACATCCACATTCCACATAAATAT
TCATAACCATTTGAAAGTAGTTTTTTTAAGTATAACAAAAATATATAAAA
TAAATTTCTACATATATTTTCTAGAAATGTATAA
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