EMLSAG00000001103, EMLSAG00000001103-683869 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592847464|gb|GAXK01110080.1| (TSA: Calanus finmarchicus comp562917_c1_seq1 transcribed RNA sequence) HSP 1 Score: 46.595 bits (109), Expect = 8.990e-7 Identity = 20/54 (37.04%), Postives = 33/54 (61.11%), Query Frame = 0 Query: 33 MAMSMLDP--CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLM 84 + +M P C+ +I CC T+ +P RCFE+NGC G++W R+ CS+ ++ Sbjct: 154 LPFTMTSPTKCQLSIVRCCD-THQSVVLPFRCFEVNGCPGIYWHARETCSNSVV 312
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592916791|gb|GAXK01041584.1| (TSA: Calanus finmarchicus comp324105_c0_seq1 transcribed RNA sequence) HSP 1 Score: 47.3654 bits (111), Expect = 9.101e-7 Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLM-NAVST 89 CE +I CC S + +P+RCFE+NGC GL+W G + C L+ +A+S+ Sbjct: 156 CELSIVRCCDSDFAVKALPLRCFEVNGCPGLYWHGVETCQEKLVADAISS 305
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592937201|gb|GAXK01021352.1| (TSA: Calanus finmarchicus comp1606121_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.8986 bits (102), Expect = 2.081e-5 Identity = 19/61 (31.15%), Postives = 35/61 (57.38%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDN 101 C+ +I CC S + +P RCFE+NGC G++W ++ S+ L+ + + I + ++ N Sbjct: 359 CQLSIVRCCDSPQQK-VLPYRCFEVNGCPGIYWHSKQTRSNSLVASAISAISTTKIKVDSN 538
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592912871|gb|GAXK01045504.1| (TSA: Calanus finmarchicus comp417877_c0_seq1 transcribed RNA sequence) HSP 1 Score: 43.1282 bits (100), Expect = 3.339e-5 Identity = 20/45 (44.44%), Postives = 29/45 (64.44%), Query Frame = 0 Query: 41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMN 85 CE+A+++CC + + +P+RCFELN C GL +G CS L N Sbjct: 275 CERAVFNCCDQSGRGNRLPIRCFELNRCPGLFMVG---CSPRLYN 400
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592845238|gb|GAXK01112306.1| (TSA: Calanus finmarchicus comp569232_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 4.987e-2 Identity = 19/44 (43.18%), Postives = 24/44 (54.55%), Query Frame = 0 Query: 30 ARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHW 73 +R S CE AI CC +NS S P RCFELN C +++ Sbjct: 127 SRSFLQSTTSNCELAILRCC--SNSSSQAPPRCFELNRCGRINF 252
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592928292|gb|GAXK01030208.1| (TSA: Calanus finmarchicus comp210975_c2_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 3.007e-1 Identity = 23/92 (25.00%), Postives = 41/92 (44.57%), Query Frame = 0 Query: 20 SAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPIT 111 S ++ + M ML E +I CC S +R RCFE+NG G++++ + C M+ I+ + ++N+R + I Sbjct: 57 SKDAYVRDTKEIENKMKMLSMFELSILRCCSS--NRDQKVQRCFEVNGFGGVNFL-KNPCKYLDMD----EIIENNAESIENNRMIDEQRIE 311 HSP 2 Score: 28.1054 bits (61), Expect = 7.684e+0 Identity = 17/52 (32.69%), Postives = 22/52 (42.31%), Query Frame = 0 Query: 25 IGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGR 76 I R + +L E I CC S RCFE NG G+H++ R Sbjct: 291 IDEQRIEKEQKKLLSKFELTILRCCSSLLDTKVG--RCFEGNGFGGIHFLRR 440
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592928293|gb|GAXK01030207.1| (TSA: Calanus finmarchicus comp210975_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 3.614e-1 Identity = 22/86 (25.58%), Postives = 40/86 (46.51%), Query Frame = 0 Query: 20 SAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRAL 105 S ++ + M ML E +I CC S +R RCFE+NG G++++ + C M+ I+ + ++N+R + Sbjct: 123 SKDAYVRDTKEIENKMKMLSMFELSILRCCSS--NRDQKVQRCFEVNGFGGVNFL-KNPCKYLDMD----EIIENNAESIENNRII 359
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592928291|gb|GAXK01030209.1| (TSA: Calanus finmarchicus comp210975_c2_seq2 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 9.705e-1 Identity = 22/77 (28.57%), Postives = 37/77 (48.05%), Query Frame = 0 Query: 34 AMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPI 110 M ML E +I CC S +R RCFE+NG G++++ + C M+ I+ + ++N+R + I Sbjct: 56 KMKMLSMFELSILRCCSS--NRDQKVQRCFEVNGFGGVNFL-KNPCKYLDMD----EIIENNAESIENNRMIDEQRI 265 HSP 2 Score: 27.7202 bits (60), Expect = 8.606e+0 Identity = 17/52 (32.69%), Postives = 22/52 (42.31%), Query Frame = 0 Query: 25 IGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGR 76 I R + +L E I CC S RCFE NG G+H++ R Sbjct: 248 IDEQRIEKEQKKLLSKFELTILRCCSSLLDTKVG--RCFEGNGFGGIHFLRR 397
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592949488|gb|GAXK01009065.1| (TSA: Calanus finmarchicus comp1413685_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 1.719e+0 Identity = 15/42 (35.71%), Postives = 23/42 (54.76%), Query Frame = 0 Query: 37 MLDPCEKAIWSCCQSTNSRSFV--PVRCFELNGCYGLHWMGR 76 +L+PC+ WS C S+ SR + P C+++N C W G Sbjct: 618 ILEPCKP*KWSFCSSSQSRKIILSPNWCWKMNCCRSEVWHGN 743
BLAST of EMLSAG00000001103 vs. L. salmonis peptides
Match: EMLSAP00000001103 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1185:182975:183411:-1 gene:EMLSAG00000001103 transcript:EMLSAT00000001103 description:"augustus_masked-LSalAtl2s1185-processed-gene-1.0") HSP 1 Score: 232.261 bits (591), Expect = 1.248e-79 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 Query: 1 MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR 115 MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR Sbjct: 1 MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR 115
BLAST of EMLSAG00000001103 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1034_size68570-snap-gene-0.13 (protein:Tk10483 transcript:maker-scaffold1034_size68570-snap-gene-0.13-mRNA-1 annotation:"hypothetical protein YQE_08514 partial") HSP 1 Score: 77.7962 bits (190), Expect = 5.038e-20 Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 0 Query: 8 LLICLCTLLLLGSAQGFIGRVRAR------RMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDR 103 LL+ L L+G+ QG G+ A + AM+ LD CE+AIW+CCQST S + +P +CF NGC GL W G + CS+ ++N ++ I S ++ ++ + Sbjct: 18 LLVLAFGLALMGAPQGTRGQQGALTQQQLFQTAMANLDSCERAIWNCCQSTRSNNQLPEQCFARNGCPGLFWHGSRVCSARMLNGIALRIQSTMVEVANSQQ 119 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001103 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 19
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BLAST of EMLSAG00000001103 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000001103 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001103 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001103 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001103 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1185:182975..183411- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001103-683869 ID=EMLSAG00000001103-683869|Name=EMLSAG00000001103|organism=Lepeophtheirus salmonis|type=gene|length=437bp|location=Sequence derived from alignment at LSalAtl2s1185:182975..183411- (Lepeophtheirus salmonis)back to top Add to Basket
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