EMLSAG00000001103, EMLSAG00000001103-683869 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001103
Unique NameEMLSAG00000001103-683869
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592847464|gb|GAXK01110080.1| (TSA: Calanus finmarchicus comp562917_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 8.990e-7
Identity = 20/54 (37.04%), Postives = 33/54 (61.11%), Query Frame = 0
Query:   33 MAMSMLDP--CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLM 84
            +  +M  P  C+ +I  CC  T+    +P RCFE+NGC G++W  R+ CS+ ++
Sbjct:  154 LPFTMTSPTKCQLSIVRCCD-THQSVVLPFRCFEVNGCPGIYWHARETCSNSVV 312          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592916791|gb|GAXK01041584.1| (TSA: Calanus finmarchicus comp324105_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 47.3654 bits (111), Expect = 9.101e-7
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLM-NAVST 89
            CE +I  CC S  +   +P+RCFE+NGC GL+W G + C   L+ +A+S+
Sbjct:  156 CELSIVRCCDSDFAVKALPLRCFEVNGCPGLYWHGVETCQEKLVADAISS 305          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592937201|gb|GAXK01021352.1| (TSA: Calanus finmarchicus comp1606121_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 2.081e-5
Identity = 19/61 (31.15%), Postives = 35/61 (57.38%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDN 101
            C+ +I  CC S   +  +P RCFE+NGC G++W  ++  S+ L+ +  + I +   ++  N
Sbjct:  359 CQLSIVRCCDSPQQK-VLPYRCFEVNGCPGIYWHSKQTRSNSLVASAISAISTTKIKVDSN 538          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592912871|gb|GAXK01045504.1| (TSA: Calanus finmarchicus comp417877_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 3.339e-5
Identity = 20/45 (44.44%), Postives = 29/45 (64.44%), Query Frame = 0
Query:   41 CEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMN 85
            CE+A+++CC  +   + +P+RCFELN C GL  +G   CS  L N
Sbjct:  275 CERAVFNCCDQSGRGNRLPIRCFELNRCPGLFMVG---CSPRLYN 400          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592845238|gb|GAXK01112306.1| (TSA: Calanus finmarchicus comp569232_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 4.987e-2
Identity = 19/44 (43.18%), Postives = 24/44 (54.55%), Query Frame = 0
Query:   30 ARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHW 73
            +R    S    CE AI  CC  +NS S  P RCFELN C  +++
Sbjct:  127 SRSFLQSTTSNCELAILRCC--SNSSSQAPPRCFELNRCGRINF 252          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592928292|gb|GAXK01030208.1| (TSA: Calanus finmarchicus comp210975_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.007e-1
Identity = 23/92 (25.00%), Postives = 41/92 (44.57%), Query Frame = 0
Query:   20 SAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPIT 111
            S   ++   +     M ML   E +I  CC S  +R     RCFE+NG  G++++ +  C    M+     I+    + ++N+R +    I 
Sbjct:   57 SKDAYVRDTKEIENKMKMLSMFELSILRCCSS--NRDQKVQRCFEVNGFGGVNFL-KNPCKYLDMD----EIIENNAESIENNRMIDEQRIE 311          

HSP 2 Score: 28.1054 bits (61), Expect = 7.684e+0
Identity = 17/52 (32.69%), Postives = 22/52 (42.31%), Query Frame = 0
Query:   25 IGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGR 76
            I   R  +    +L   E  I  CC S         RCFE NG  G+H++ R
Sbjct:  291 IDEQRIEKEQKKLLSKFELTILRCCSSLLDTKVG--RCFEGNGFGGIHFLRR 440          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592928293|gb|GAXK01030207.1| (TSA: Calanus finmarchicus comp210975_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.614e-1
Identity = 22/86 (25.58%), Postives = 40/86 (46.51%), Query Frame = 0
Query:   20 SAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRAL 105
            S   ++   +     M ML   E +I  CC S  +R     RCFE+NG  G++++ +  C    M+     I+    + ++N+R +
Sbjct:  123 SKDAYVRDTKEIENKMKMLSMFELSILRCCSS--NRDQKVQRCFEVNGFGGVNFL-KNPCKYLDMD----EIIENNAESIENNRII 359          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592928291|gb|GAXK01030209.1| (TSA: Calanus finmarchicus comp210975_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 9.705e-1
Identity = 22/77 (28.57%), Postives = 37/77 (48.05%), Query Frame = 0
Query:   34 AMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPI 110
             M ML   E +I  CC S  +R     RCFE+NG  G++++ +  C    M+     I+    + ++N+R +    I
Sbjct:   56 KMKMLSMFELSILRCCSS--NRDQKVQRCFEVNGFGGVNFL-KNPCKYLDMD----EIIENNAESIENNRMIDEQRI 265          

HSP 2 Score: 27.7202 bits (60), Expect = 8.606e+0
Identity = 17/52 (32.69%), Postives = 22/52 (42.31%), Query Frame = 0
Query:   25 IGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGR 76
            I   R  +    +L   E  I  CC S         RCFE NG  G+H++ R
Sbjct:  248 IDEQRIEKEQKKLLSKFELTILRCCSSLLDTKVG--RCFEGNGFGGIHFLRR 397          
BLAST of EMLSAG00000001103 vs. C. finmarchicus
Match: gi|592949488|gb|GAXK01009065.1| (TSA: Calanus finmarchicus comp1413685_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.719e+0
Identity = 15/42 (35.71%), Postives = 23/42 (54.76%), Query Frame = 0
Query:   37 MLDPCEKAIWSCCQSTNSRSFV--PVRCFELNGCYGLHWMGR 76
            +L+PC+   WS C S+ SR  +  P  C+++N C    W G 
Sbjct:  618 ILEPCKP*KWSFCSSSQSRKIILSPNWCWKMNCCRSEVWHGN 743          
BLAST of EMLSAG00000001103 vs. L. salmonis peptides
Match: EMLSAP00000001103 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1185:182975:183411:-1 gene:EMLSAG00000001103 transcript:EMLSAT00000001103 description:"augustus_masked-LSalAtl2s1185-processed-gene-1.0")

HSP 1 Score: 232.261 bits (591), Expect = 1.248e-79
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
Query:    1 MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR 115
            MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR
Sbjct:    1 MFRKSPALLICLCTLLLLGSAQGFIGRVRARRMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDRALSXXPITVIKR 115          
BLAST of EMLSAG00000001103 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1034_size68570-snap-gene-0.13 (protein:Tk10483 transcript:maker-scaffold1034_size68570-snap-gene-0.13-mRNA-1 annotation:"hypothetical protein YQE_08514 partial")

HSP 1 Score: 77.7962 bits (190), Expect = 5.038e-20
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 0
Query:    8 LLICLCTLLLLGSAQGFIGRVRAR------RMAMSMLDPCEKAIWSCCQSTNSRSFVPVRCFELNGCYGLHWMGRKACSSGLMNAVSTHIVSLTTQIMDNDR 103
            LL+    L L+G+ QG  G+  A       + AM+ LD CE+AIW+CCQST S + +P +CF  NGC GL W G + CS+ ++N ++  I S   ++ ++ +
Sbjct:   18 LLVLAFGLALMGAPQGTRGQQGALTQQQLFQTAMANLDSCERAIWNCCQSTRSNNQLPEQCFARNGCPGLFWHGSRVCSARMLNGIALRIQSTMVEVANSQQ 119          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001103 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001103 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 19
Match NameE-valueIdentityDescription
gi|592847464|gb|GAXK01110080.1|8.990e-737.04TSA: Calanus finmarchicus comp562917_c1_seq1 trans... [more]
gi|592916791|gb|GAXK01041584.1|9.101e-744.00TSA: Calanus finmarchicus comp324105_c0_seq1 trans... [more]
gi|592937201|gb|GAXK01021352.1|2.081e-531.15TSA: Calanus finmarchicus comp1606121_c0_seq1 tran... [more]
gi|592912871|gb|GAXK01045504.1|3.339e-544.44TSA: Calanus finmarchicus comp417877_c0_seq1 trans... [more]
gi|592845238|gb|GAXK01112306.1|4.987e-243.18TSA: Calanus finmarchicus comp569232_c0_seq1 trans... [more]
gi|592928292|gb|GAXK01030208.1|3.007e-125.00TSA: Calanus finmarchicus comp210975_c2_seq1 trans... [more]
gi|592928293|gb|GAXK01030207.1|3.614e-125.58TSA: Calanus finmarchicus comp210975_c0_seq1 trans... [more]
gi|592928291|gb|GAXK01030209.1|9.705e-128.57TSA: Calanus finmarchicus comp210975_c2_seq2 trans... [more]
gi|592949488|gb|GAXK01009065.1|1.719e+035.71TSA: Calanus finmarchicus comp1413685_c0_seq1 tran... [more]

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BLAST of EMLSAG00000001103 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011031.248e-79100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1185:1829... [more]
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BLAST of EMLSAG00000001103 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001103 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001103 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001103 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold1034_size68570-snap-gene-0.135.038e-2038.24protein:Tk10483 transcript:maker-scaffold1034_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1185supercontigLSalAtl2s1185:182975..183411 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1185-processed-gene-1.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001103 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001103EMLSAT00000001103-696950Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1185:182975..183411-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001103-683869 ID=EMLSAG00000001103-683869|Name=EMLSAG00000001103|organism=Lepeophtheirus salmonis|type=gene|length=437bp|location=Sequence derived from alignment at LSalAtl2s1185:182975..183411- (Lepeophtheirus salmonis)
ATGTTTCGCAAGTCTCCAGCCCTTCTCATATGTTTATGCACTCTTCTTCT CCTTGGAAGTGCACAAGGATTCATTGGTAGAGTACGTGCACGTCGAATGG CCATGTCTATGTTGGATCCCTGCGAGAAAGCTATTTGGAGGTACATGGAT ATATAATATAATAAATTATTAAACTGTACTCCAGAAACAGGGGATTTCAT TAATTTAAATGTTTTATGTACAATTTCAGCTGCTGTCAATCCACTAATTC AAGGTCCTTTGTTCCTGTTCGATGTTTTGAGCTGAATGGTTGTTACGGAC TTCATTGGATGGGACGCAAAGCCTGCTCCTCTGGTTTAATGAATGCTGTA AGTACGCACATCGTCTCACTTACAACACAAATCATGGATAATGACAGAGC ACTCAGTNNNNNTCCTATCACAGTAATAAAACGATAA
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