EMLSAG00000001133, EMLSAG00000001133-683899 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001133
Unique NameEMLSAG00000001133-683899
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001133 vs. C. finmarchicus
Match: gi|592763038|gb|GAXK01191455.1| (TSA: Calanus finmarchicus comp40341_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 1.638e-2
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 0 
Query:   38 NLALADSKNVVFPALSSPRINT 59
            +L LADSK VV PALS PRI T
Sbjct:   78 SLVLADSKKVVLPALSRPRIRT 143
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BLAST of EMLSAG00000001133 vs. C. finmarchicus
Match: gi|592891117|gb|GAXK01067258.1| (TSA: Calanus finmarchicus comp4340950_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 6.930e+0
Identity = 15/40 (37.50%), Postives = 21/40 (52.50%), Query Frame = 0 
Query:   10 HMQGCQKLPNIVKAEVTASTDFFLRSRENLALADSKNVVF 49
              Q C  LP + K     S +FFL   ENL+L  +K+ +F
Sbjct:  406 FWQSCDFLPQLTKILSLTSLNFFL---ENLSLFINKSRIF 516
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BLAST of EMLSAG00000001133 vs. C. finmarchicus
Match: gi|592891118|gb|GAXK01067257.1| (TSA: Calanus finmarchicus comp4340950_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 6.954e+0
Identity = 15/40 (37.50%), Postives = 21/40 (52.50%), Query Frame = 0 
Query:   10 HMQGCQKLPNIVKAEVTASTDFFLRSRENLALADSKNVVF 49
              Q C  LP + K     S +FFL   ENL+L  +K+ +F
Sbjct:  406 FWQSCDFLPQLTKILSLTSLNFFL---ENLSLFINKSRIF 516
[Close]
BLAST of EMLSAG00000001133 vs. C. finmarchicus
Match: gi|592853625|gb|GAXK01103919.1| (TSA: Calanus finmarchicus comp1170790_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.009e+0
Identity = 11/11 (100.00%), Postives = 11/11 (100.00%), Query Frame = 0 
Query:   46 NVVFPALSSPR 56
            NVVFPALSSPR
Sbjct:  488 NVVFPALSSPR 520
[Close]
BLAST of EMLSAG00000001133 vs. L. salmonis peptides
Match: EMLSAP00000001133 (pep:novel supercontig:LSalAtl2s:LSalAtl2s118:334151:339036:-1 gene:EMLSAG00000001133 transcript:EMLSAT00000001133 description:"snap_masked-LSalAtl2s118-processed-gene-3.22")

HSP 1 Score: 122.865 bits (307), Expect = 2.575e-38
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MLVLQIGKNHMQGCQKLPNIVKAEVTASTDFFLRSRENLALADSKNVVFPALSSPRINT 59
            MLVLQIGKNHMQGCQKLPNIVKAEVTASTDFFLRSRENLALADSKNVVFPALSSPRINT
Sbjct:    1 MLVLQIGKNHMQGCQKLPNIVKAEVTASTDFFLRSRENLALADSKNVVFPALSSPRINT 59
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001133 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001133 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592763038|gb|GAXK01191455.1|1.638e-272.73TSA: Calanus finmarchicus comp40341_c0_seq1 transc... [more]
gi|592891117|gb|GAXK01067258.1|6.930e+037.50TSA: Calanus finmarchicus comp4340950_c0_seq2 tran... [more]
gi|592891118|gb|GAXK01067257.1|6.954e+037.50TSA: Calanus finmarchicus comp4340950_c0_seq1 tran... [more]
gi|592853625|gb|GAXK01103919.1|8.009e+0100.00TSA: Calanus finmarchicus comp1170790_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001133 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011332.575e-38100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s118:33415... [more]
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BLAST of EMLSAG00000001133 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001133 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001133 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001133 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s118supercontigLSalAtl2s118:334151..339036 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s118-processed-gene-3.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001133 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001133EMLSAT00000001133-696980Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s118:334151..339036-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001133-683899 ID=EMLSAG00000001133-683899|Name=EMLSAG00000001133|organism=Lepeophtheirus salmonis|type=gene|length=4886bp|location=Sequence derived from alignment at LSalAtl2s118:334151..339036- (Lepeophtheirus salmonis)
ATGTTGGTCCTTCAAATCGGTAAAAATCATATGCAAGGCTGCCAAAAACT
ACCAAACATTGTTAAGGCAGAAGTCACGGCCTCGGTGACTAGATTTGTAA
AAAAGTAAAAACAACAAAGTATGAACTTTTAATTTAAACAAAAAGTCTAA
TTTTTTATTAAAACAAAAAGTGTCCATTTTTTTAGTAAAACAAGAAGAAA
TAATTGCTCTTGAAAAAAAAAATCTGACCTAGTCAATCCCCTAAGAACAA
TCCTAGTCACATCCCATTAAATACTTTGCATTTTATCTTTGTTTCAGGAA
TTGTTTGTTGAAAAAATGACCCTGGTCTGAGTATCAGCCTCCTAAAAAAA
CATATATCGGCTCAAATTTATATAAAAAGTAATTRTTACATTATGTCGAA
TCTTATTAAACCGAAAGCTGCAAAACTTGTCAGCTTAAGTACATTTCTTA
GCTACCTGGTATATTTTTTTACTTAGCAAGATTACATTTTTTTATTATGA
TGAAATTTGCATAGCTAACAGAATTTACCTTGCTAATACAATGAAAAATG
TGAATTCATGGAGGCTACATAGTTATTTATGGAGTAATATTCAACGCTTC
TAAAAAGGTGTTACATCATTAACATAAAAATTTAAAATGTATTTTGTCAT
AGGCTATCGATTTTCAACTTATTTTCCCCTTATCAGTGTTCTGAACATAG
ATTGATTGAATAAGAATTACCTCTTCTTCCACTTTATGAGACATTTATTT
TCATAATCCTCGAAAGTGCTAATTTCCGAATATCTCGAAAAAGTCCCTCT
CCTCCTACTCAAATAATATATTCCATATAATTGGATATAGGATTTCTGTA
AGAGTGTGAGGAGAAGGCGGTATTACTGAATTAAGACCATTGTTAATATC
AGCTGCCTCTTATATCATTTTTTTAGGGGGGGGGGTGAATTAATTACTAC
TATAAACGGGGAGAATATTGTAATTATATCTAAGTTCTTATATATTTATT
CTATTATACATTTTTAAATCAATTGACACCAAAGATAGGCAAGAATCCTT
CTTTTAGAGGGAGATGTTAACACACACACGACTGATTAAATAATTAACGA
AAAAAAGAAGAAAGAGCACACGCATCAACTGACTTTCCTTCTCAAATCTC
TAAATTTTCTTTTTTCTTTACAGAAATCTCATATTTACTTATAATATAAT
TTGCTTATTGATAAAATGGTTTGGATAGTTGAATTTCAGCTATCTGCTCT
TRCTGTCTCCAATTTCGATATAGAAAGAGAAAATATGGGAAGCGGGCAAG
CTAATATAATGCGAGCGATTTTTTTTTTTTGGGGGGGGGAGCATTTTGTA
CTTATTTTTGTTTTAAAAGGCCTGTCAACTCTGAAAATTGAATAAGGGGC
ATATGTATTTAAACTACGTGGCTCTTCTTCACTTAATACTACTCATCTTC
CCATATGGACTGACATGGATTGTTCCTCTCAATGTAATTATAACAAGGTT
AGTCAGCAACGATTTTCAGTTATCACTAACGGATATAATGGATGACATCA
TTGGACCCCAAATATAAGAAAATAACGATGGAGAATAACCTAAATATAGC
GTGTATAAATGAGGAATCAATAGAAGAAATAAATTTGAATTACTCCATTT
TATACTTTGTATGTATTACATTTAGTCAAACAAATGTACCCAATGACGTC
ATTAGAAAGAGTTTATTAATAAATCTGCAGTATTTGTCACACGAATGTAT
TGTAGCCTAACCTTACTCTAATAGTATTGGTTCCCTTCCAAAAAATAAGA
GGTCGTAWGGGTGWATATGACTCCTAAACAGTAACTTTTGATCAGCTCTC
TTATCAAAAAATATTCACAAAACTAGATAAGATGAAGTTAATTCAATTTA
TGACCATGAAAAATTTGTGAGCATTCCAAATATTTCCGTAATCTACTCAA
ACTAACAGGCACGTTTCACATMTTTGTTTTAAGGCTTTATTCTACAAATA
GATAATATCAAATACAGGCAACGATTCGAAACAATTGACCCTTAAAAATT
TCAATCATGTGCTACATACTCTATTATAATAAAAAAAAAAGAGTAGATTT
AATAGAGGATTTATATCCCTGAGAAGTCAGGGATATCTATAAGGAGAATA
AAAAAATAAAATAGTTTCCTTTATACATTAGCATTTTTTTAGGTTGATAA
AGTTGTTGATAGCAAATACATATAAAAATAGGCTCAAAAGATGTACATTG
TCTGAGTAAACTATTGTATATGAAGTAAGGATGTATGTAGTGTTGGTTTT
AAGATAATTTAATCCGTTAACAAGATTTTGAGAGAGAAAATATATATCTA
AAGGGAAATTTGTTAATCTAGTTGCTTTGGTAGTAGTTATCCCTAGAGTT
GAGTAGTTTGTAATGAAAAAAAGAACGCGAAGAGAAAGCGAGATCGAAAA
ATATGGTACACTTGGACCATAGATATCTCTAGCTATCTGGACTACATGCA
GATGATTAAAAATGCGCCCGACTCAAAGACACGGCTTATTTTTTAAATTA
ATTTCATTGTTTTCAGTAGTCAAATATACTATTGTCTATTCTTAAAGCTT
ATGGATTCCGATCGTCACTGTTAAGTTTAAGGTGATGGGATGGAAGTGAT
GTACCCTTCTCATCGAATAAAACTATTGATATTTGAACAAAAAAGTATTA
GTATATGGTAAAAATTCCTATGAAATAACTAGGTTTTTACAATTAATTTT
GTTTTGGATCGATTAGAGATGACAAAAGTAGGATAACTAATAGAGAAAAA
TAAATAATCCTTGCAAATGTAGTAAATAGCTTATTTTTTATATATAAATA
TCAAATTATAATAATATAATTTAATATTTTTATCATATAATCAGATCGGA
CGTATAATAAAGCTAGATTTTTGATAACCAAAACAGATTTAAATCCTTTT
TTATTTTTATCAGTCCCATTTTAAATCCAAATACAATTAATGTAGTTGAC
CATTTGCATTAATCTTAATGGAAAAGGGGTTTTTATTTCTATAATATTTA
TGTTCTATACTCCTAAAACCGTGGGGTCCGCAGGATTATATATAAATATA
ATTCTTTTTTTGCAGGTTAGGGGGACTTTGTTTCTGGATTTTTTCTGAAA
AAAATTTAAAATTCATAGCTATTTAGAAAAAATTCATTTAAAATCTACAG
CTGTTCTGAGAAAATTTAAAAAAAAAAATCAAATATTAAATTTAAAAATC
CATAACTGTTCAAAGAAAATTAATTTTTTTGGAAAAAACATTGAAAAAGG
AAATTTCAAATATTAAATTTTTTGAAAAAATATCAAAAATACAGAGTTAT
TTAAAAAAAATTCAAAACTGAAATTTCAAATATTAAATTTTCTCGAAAAA
AAAATCAAAAATTAACATTTTTGCTCTGCTGCATAATTTCCCCGAATGTC
CTTTTTTTTTTTAATAAAGGAAATTTTTCAAAAAAAAAATTACCCATTTT
CGCGTAAAATTTTTTCATACTGACCATAAAATTCTAGTAAAAAGCAAATG
CTCCTTAGTTTGGTGGGGAGTGCTACAGTACCTCCAGCCCACCCCCGACG
CCCCTGTAAAATGACCGGCATCTACAATGCTGAAGTCAAGTAAAAACATT
ATATTAAACAGCTTCTTATAATAATAGAAAATATTTTATAAAAATCCTTT
GCAATCATAATTAACACGACTTTTAATTAGACACGTAACTAAAAATGAAC
TTCAACTCCTAAAAGAATGGCAAACTATACATATATTTACAAATGGTATT
GTATTTTACATAATCAGAACGTACGTTCATAAGTAAAATTATTTACGTTT
GATATAATAGTTTAAATAGTTGTTAACCCTTATGTTGACTCGCAAATATG
ATGGCTATGATTAAAAAATTGTAGAATAATGCATATCTAAGGCCCCTTAA
ATTATTAAAAAACAATTTAACAATATTTTACTGATATATAAAATACTAAA
GAATATATAAAATGCATACAATTTTTTACTCGGCGTCATATGAGAGACGG
TACAAGGGCTTAAAAATCCCCTTTTTTTAAACTCAAATCACCTGAGAGGC
CAGTGTCATATTTTTTTTTTATTTATTAAAAGACGTAAATTGGCCCCATT
ATGGCCTTTCAAATAAAATTTATCAATTTCTCATTCCTTTATTGTGATGA
TTAATTTTGGCTACTTAAAGTGTGATTTGAGGCACTTCCAAAGTACTAAA
CAGAATAAGTTATTGATATAAATTGACGATAATTTGTCGAAGAATACAAT
TGTACTTCACCCAACTTTGAACAAACTTATTCTAACTTGCTTTTTTTGAG
GGGCCACATATACAAATAAGAACATTTATTTAAAAATTCATAAAATTAAG
TAAATATTCTAATATAGGCTCAGTTTTATTGACCTACCGGGAAGGTCTTG
TTTATTTGCAAGTACCAGTAATGGAACTCCTTTCAAATTTTCATTAGAAA
TCATACTATCAAAGGAAACTTTGGACTCAGAAATTCTCTCTCGATCATTG
GAATCTATCGTATAAATGATTGCATGGCATTCAGCGTAGTATTTGTCCCA
GAGGGACTGAAGCTCACTCTGACCTCCTAAATCCCAAAAATTCAATCTGC
AATGTAAATAAAATATGTTATAACAGTAATTACAATTATATTTTATCGAG
AAGGGAATTTGTTACCTAACGCTGTTCACTTCAATTCTTCCAATGTTGAG
ACCCACAGTGGTCGTTATTTTAGCTGGATTTATTTTGAAGACGGATTTCT
TCTTGCGATCCAGAGAGAATTTGGCCTTAGCAGACTCCAAAAACGTTGTT
TTCCCCGCGTTGTCTAGCCCCAGAATCAATACATAA
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