EMLSAG00000001137, EMLSAG00000001137-683903 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001137
Unique NameEMLSAG00000001137-683903
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001137 vs. C. finmarchicus
Match: gi|592866516|gb|GAXK01091046.1| (TSA: Calanus finmarchicus comp456889_c2_seq9 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 7.722e-1
Identity = 13/40 (32.50%), Postives = 20/40 (50.00%), Query Frame = 0 
Query:   10 EAPRSIFQNMLLYFKYHLMSKAPLIYVPIVHFEPRKLLHS 49
            +  R   Q M    +YH +  +  I VP +H +  K+LHS
Sbjct:  168 KNTRKYSQTMKCRVQYHHLQTSGRILVPAIHLQVNKVLHS 287
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BLAST of EMLSAG00000001137 vs. C. finmarchicus
Match: gi|592866517|gb|GAXK01091045.1| (TSA: Calanus finmarchicus comp456889_c2_seq8 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 8.565e-1
Identity = 13/40 (32.50%), Postives = 20/40 (50.00%), Query Frame = 0 
Query:   10 EAPRSIFQNMLLYFKYHLMSKAPLIYVPIVHFEPRKLLHS 49
            +  R   Q M    +YH +  +  I VP +H +  K+LHS
Sbjct:  168 KNTRKYSQTMKCRVQYHHLQTSGRILVPAIHLQVNKVLHS 287
[Close]
BLAST of EMLSAG00000001137 vs. C. finmarchicus
Match: gi|592866518|gb|GAXK01091044.1| (TSA: Calanus finmarchicus comp456889_c2_seq7 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 9.077e-1
Identity = 13/40 (32.50%), Postives = 20/40 (50.00%), Query Frame = 0 
Query:   10 EAPRSIFQNMLLYFKYHLMSKAPLIYVPIVHFEPRKLLHS 49
            +  R   Q M    +YH +  +  I VP +H +  K+LHS
Sbjct:  168 KNTRKYSQTMKCRVQYHHLQTSGRILVPAIHLQVNKVLHS 287
[Close]
BLAST of EMLSAG00000001137 vs. L. salmonis peptides
Match: EMLSAP00000001137 (pep:novel supercontig:LSalAtl2s:LSalAtl2s118:391062:391757:-1 gene:EMLSAG00000001137 transcript:EMLSAT00000001137 description:"maker-LSalAtl2s118-augustus-gene-4.17")

HSP 1 Score: 99.3673 bits (246), Expect = 2.742e-29
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 
Query:    1 MVWXFICLMEAPRSIFQNMLLYFKYHLMSKAPLIYVPIVHFEPRKLLHS 49
            MVWXFICLMEAPRSIFQNMLLYFKYHLMSKAPLIYVPIVHFEPRKLLHS
Sbjct:    1 MVWXFICLMEAPRSIFQNMLLYFKYHLMSKAPLIYVPIVHFEPRKLLHS 49
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001137 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001137 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592866516|gb|GAXK01091046.1|7.722e-132.50TSA: Calanus finmarchicus comp456889_c2_seq9 trans... [more]
gi|592866517|gb|GAXK01091045.1|8.565e-132.50TSA: Calanus finmarchicus comp456889_c2_seq8 trans... [more]
gi|592866518|gb|GAXK01091044.1|9.077e-132.50TSA: Calanus finmarchicus comp456889_c2_seq7 trans... [more]
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BLAST of EMLSAG00000001137 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011372.742e-29100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s118:39106... [more]
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BLAST of EMLSAG00000001137 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001137 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001137 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001137 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s118supercontigLSalAtl2s118:391062..391757 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s118-augustus-gene-4.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001137 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001137EMLSAT00000001137-696984Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s118:391062..391757-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001137-683903 ID=EMLSAG00000001137-683903|Name=EMLSAG00000001137|organism=Lepeophtheirus salmonis|type=gene|length=696bp|location=Sequence derived from alignment at LSalAtl2s118:391062..391757- (Lepeophtheirus salmonis)
AAATCAACCTGGATTGTCGATGGTGTGGNAGTTCATTTGCCTCATGGAGG
CACCTCGGTCGATATTCCAAAATATGCTTCTGTATTTCAAATATCATTTA
ATGTCAAAGGCTCCACTCATATATGTTCCGATTGTTCACTTCGAGCCAAG
GAAGCTGCTGCATTCATAGCACATATTCGTAAAGTTGAGAAAAAAGGTCC
TAAGAGCAATTATGATTGTATAGGTATGAATTAAACCGGGATTTATTAAT
TAAATGACTATTATTATTTATTAATAAATGGCTAATTATTTATAGGTACG
GATCATTATCTCACCGAATCTCCTCTTCTTTCTCCCTTTCAGCTTCCATC
TGTTGATATCGAAGTAATAATAATGATATTTATTCATTAATTAATTATAA
GCTTTGTGTCTAACTTGCTTGTTGTACACAGGATGTAGATACTTTAGTTG
TCGAATTGGGCCCTGATGACATTTATGGAGAGGATTTTGGTAAGATGGAT
GTCTTTGATTCATCTACTACTATAGTTTCCATGGAATCTGAAGGAGTTTC
CAAACTAAGGAGGATTTTYCCCAAACCAATTAAGGATCAAACTAGTTTTT
CTTCTGATGTAATTGTCTTATAGATTAATTAATTATTACATGTCAAGGAT
ATAATTAATCGCTTTCTAATTTTAGGATACCCTTGANNAGAAATGA
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