EMLSAG00000001141, EMLSAG00000001141-683907 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001141
Unique NameEMLSAG00000001141-683907
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592780420|gb|GAXK01174148.1| (TSA: Calanus finmarchicus comp230339_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 46.9802 bits (110), Expect = 5.850e-7
Identity = 23/66 (34.85%), Postives = 35/66 (53.03%), Query Frame = 0 
Query:   16 LSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKLKXXAGRXXANDSNDD 81
            L +LK++IP +   G  V  V+++EE  RYI  L   L+ ++R HG P KL     +   +D   D
Sbjct:  131 LWRLKEMIPSLAQQGA-VDEVDILEETTRYILSLEQKLLEKVREHGLPEKLVKMKDKHIVSDDQSD 325
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BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592780419|gb|GAXK01174149.1| (TSA: Calanus finmarchicus comp230339_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 7.751e-7
Identity = 23/65 (35.38%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   16 LSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKLKXXAGRXXANDSND 80
            L +LK++IP +   G  V  V+++EE  RYI  L   L+ ++R HG P KL         +D  D
Sbjct:  131 LWRLKEMIPSLAQQGA-VDEVDILEETTRYILSLEQKLLEKVREHGLPEKLVKMKDNPAVSDDED 322
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BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592780418|gb|GAXK01174150.1| (TSA: Calanus finmarchicus comp230339_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 46.2098 bits (108), Expect = 8.012e-7
Identity = 21/51 (41.18%), Postives = 31/51 (60.78%), Query Frame = 0 
Query:   16 LSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKL 66
            L +LK++IP +   G  V  V+++EE  RYI  L   L+ ++R HG P KL
Sbjct:  193 LRRLKEMIPSLAQQGA-VDEVDILEETTRYILSLEQKLLEKVREHGLPEKL 342
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BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592780421|gb|GAXK01174147.1| (TSA: Calanus finmarchicus comp230339_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 1.036e-6
Identity = 23/65 (35.38%), Postives = 34/65 (52.31%), Query Frame = 0 
Query:   16 LSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKLKXXAGRXXANDSND 80
            L +LK++IP +   G  V  V+++EE  RYI  L   L+ ++R HG P KL         +D  D
Sbjct:  193 LRRLKEMIPSLAQQGA-VDEVDILEETTRYILSLEQKLLEKVREHGLPEKLVKMKDNPAVSDDED 384
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BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592780417|gb|GAXK01174151.1| (TSA: Calanus finmarchicus comp230339_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 45.4394 bits (106), Expect = 1.144e-6
Identity = 21/51 (41.18%), Postives = 31/51 (60.78%), Query Frame = 0 
Query:   16 LSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKL 66
            L +LK++IP +   G  V  V+++EE  RYI  L   L+ ++R HG P KL
Sbjct:  193 LRRLKEMIPSLAQQGA-VDEVDILEETTRYILSLEQKLLEKVREHGLPEKL 342
[Close]
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592780416|gb|GAXK01174152.1| (TSA: Calanus finmarchicus comp230339_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 1.523e-6
Identity = 21/51 (41.18%), Postives = 31/51 (60.78%), Query Frame = 0 
Query:   16 LSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKL 66
            L +LK++IP +   G  V  V+++EE  RYI  L   L+ ++R HG P KL
Sbjct:  131 LWRLKEMIPSLAQQGA-VDEVDILEETTRYILSLEQKLLEKVREHGLPEKL 280
[Close]
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592910886|gb|GAXK01047489.1| (TSA: Calanus finmarchicus comp75623_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 40.4318 bits (93), Expect = 1.305e-4
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0 
Query:   15 DLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQI 57
            DL +LK LIP M T+  +V+H+++I EA RYI+ L   LV +I
Sbjct:  222 DLMRLKDLIPSM-TAKDNVTHLDIILEAIRYIDSLQDKLVDKI 347
[Close]
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592910889|gb|GAXK01047486.1| (TSA: Calanus finmarchicus comp75623_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 1.427e-4
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0 
Query:   15 DLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQI 57
            DL +LK LIP M T+  +V+H+++I EA RYI+ L   LV +I
Sbjct:  296 DLVRLKDLIPSM-TAKDNVTHLDIILEAIRYIDSLQDKLVDKI 421
[Close]
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592910891|gb|GAXK01047484.1| (TSA: Calanus finmarchicus comp75623_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 1.431e-4
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0 
Query:   15 DLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQI 57
            DL +LK LIP M T+  +V+H+++I EA RYI+ L   LV +I
Sbjct:  314 DLVRLKDLIPSM-TAKDNVTHLDIILEAIRYIDSLQDKLVDKI 439
[Close]
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592910887|gb|GAXK01047488.1| (TSA: Calanus finmarchicus comp75623_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 40.4318 bits (93), Expect = 1.584e-4
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 0 
Query:   15 DLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRT 59
            DL +LK LIP M T+  +V+H+++I EA RYI+ L   L  +I T
Sbjct:  222 DLMRLKDLIPSM-TAKDNVTHLDIILEAIRYIDSLQDKLADKIDT 353
[Close]
BLAST of EMLSAG00000001141 vs. L. salmonis peptides
Match: EMLSAP00000001141 (pep:novel supercontig:LSalAtl2s:LSalAtl2s118:431419:431791:-1 gene:EMLSAG00000001141 transcript:EMLSAT00000001141 description:"maker-LSalAtl2s118-augustus-gene-4.18")

HSP 1 Score: 182.956 bits (463), Expect = 8.201e-61
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 
Query:    1 MSRKELKFQSAFDKDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKLKXXAGRXXANDSNDDISRAIKSFARKNP 94
            MSRKELKFQSAFDKDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKLKXXAGRXXANDSNDDISRAIKSFARKNP
Sbjct:    1 MSRKELKFQSAFDKDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKLKXXAGRXXANDSNDDISRAIKSFARKNP 94
[Close]
BLAST of EMLSAG00000001141 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold619_size123246-processed-gene-0.28 (protein:Tk05506 transcript:snap_masked-scaffold619_size123246-processed-gene-0.28-mRNA-1 annotation:"transcription factor partial")

HSP 1 Score: 45.8246 bits (107), Expect = 2.239e-7
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 0 
Query:    5 ELKFQSAFDKDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQI 57
            ELK    F K+  +LK L+P + T  +D+S VE++EE  RYI+ LH  L  +I
Sbjct:   95 ELKKSKKFQKEYGRLKHLVPAL-TEREDLSKVEIVEETIRYIDALHHQLASRI 146
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001141 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001141 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 21
Match NameE-valueIdentityDescription
gi|592780420|gb|GAXK01174148.1|5.850e-734.85TSA: Calanus finmarchicus comp230339_c0_seq3 trans... [more]
gi|592780419|gb|GAXK01174149.1|7.751e-735.38TSA: Calanus finmarchicus comp230339_c0_seq4 trans... [more]
gi|592780418|gb|GAXK01174150.1|8.012e-741.18TSA: Calanus finmarchicus comp230339_c0_seq5 trans... [more]
gi|592780421|gb|GAXK01174147.1|1.036e-635.38TSA: Calanus finmarchicus comp230339_c0_seq2 trans... [more]
gi|592780417|gb|GAXK01174151.1|1.144e-641.18TSA: Calanus finmarchicus comp230339_c0_seq6 trans... [more]
gi|592780416|gb|GAXK01174152.1|1.523e-641.18TSA: Calanus finmarchicus comp230339_c0_seq7 trans... [more]
gi|592910886|gb|GAXK01047489.1|1.305e-448.84TSA: Calanus finmarchicus comp75623_c0_seq6 transc... [more]
gi|592910889|gb|GAXK01047486.1|1.427e-448.84TSA: Calanus finmarchicus comp75623_c0_seq3 transc... [more]
gi|592910891|gb|GAXK01047484.1|1.431e-448.84TSA: Calanus finmarchicus comp75623_c0_seq1 transc... [more]
gi|592910887|gb|GAXK01047488.1|1.584e-446.67TSA: Calanus finmarchicus comp75623_c0_seq5 transc... [more]

Pages

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BLAST of EMLSAG00000001141 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011418.201e-61100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s118:43141... [more]
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BLAST of EMLSAG00000001141 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001141 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001141 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001141 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
snap_masked-scaffold619_size123246-processed-gene-0.282.239e-743.40protein:Tk05506 transcript:snap_masked-scaffold619... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s118supercontigLSalAtl2s118:431419..431791 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s118-augustus-gene-4.18
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001141 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001141EMLSAT00000001141-696988Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s118:431419..431791-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001141-683907 ID=EMLSAG00000001141-683907|Name=EMLSAG00000001141|organism=Lepeophtheirus salmonis|type=gene|length=373bp|location=Sequence derived from alignment at LSalAtl2s118:431419..431791- (Lepeophtheirus salmonis)
ATGAGTCGTAAAGAGTTAAAGTTTCAAAGTGCTTTTGACAAGGATTTATC
TAAATTAAAACAGTTGATTCCAGGAATGAACACTTCAGGAAAAGACGTTT
CACACGTAAGATTTACTTTTTTTCCAATATATGATATTGTTATATGCCGC
ACTAAAAAGGATTATAACGCTTGATTTCCATTCATAATTATAGGTGGAGG
TGATAGAAGAGGCGAATCGATACATTGAAAAGCTTCACTCCCATTTGGTA
TGCCAAATCCGTACTCACGGATTTCCTGAWAAACTCAAGRCACAMGCAGG
AAGARCCKCCGCCAATGACTCTAATGATGATATATCGAGGGCCATTAAAA
GCTTCGCAAGGAAGAACCCCTAA
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