EMLSAG00000001141, EMLSAG00000001141-683907 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001141
Unique NameEMLSAG00000001141-683907
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592910888|gb|GAXK01047487.1| (TSA: Calanus finmarchicus comp75623_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 40.4318 bits (93), Expect = 1.898e-4
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 0
Query:   15 DLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRT 59
            DL +LK LIP M T+  +V+H+++I EA RYI+ L   L  +I T
Sbjct:  296 DLVRLKDLIPSM-TAKDNVTHLDIILEAIRYIDSLQDKLADKIDT 427          
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592910890|gb|GAXK01047485.1| (TSA: Calanus finmarchicus comp75623_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 40.4318 bits (93), Expect = 1.956e-4
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 0
Query:   15 DLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRT 59
            DL +LK LIP M T+  +V+H+++I EA RYI+ L   L  +I T
Sbjct:  314 DLVRLKDLIPSM-TAKDNVTHLDIILEAIRYIDSLQDKLADKIDT 445          
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592780422|gb|GAXK01174146.1| (TSA: Calanus finmarchicus comp230339_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 3.266e-4
Identity = 18/56 (32.14%), Postives = 31/56 (55.36%), Query Frame = 0
Query:   16 LSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKLKXXAG 71
            L +LK++IP M    + +  V+++EE  RYI  L   L+ +++ +G P  L    G
Sbjct:  131 LWRLKEMIPNM-AQQQQIDEVDILEETTRYILSLEQKLLKKVQEYGLPDSLNKLKG 295          
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592910883|gb|GAXK01047492.1| (TSA: Calanus finmarchicus comp75623_c0_seq9 transcribed RNA sequence)

HSP 1 Score: 38.5058 bits (88), Expect = 6.428e-4
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 0
Query:   15 DLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQI 57
            DL +LK LIP + T+  +V+H+++I EA RYI+ L   LV +I
Sbjct:  204 DLMRLKDLIPSV-TAKDNVTHLDIILEAIRYIDSLQDKLVDKI 329          
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592910882|gb|GAXK01047493.1| (TSA: Calanus finmarchicus comp75623_c0_seq10 transcribed RNA sequence)

HSP 1 Score: 38.5058 bits (88), Expect = 6.973e-4
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 0
Query:   15 DLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRT 59
            DL +LK LIP + T+  +V+H+++I EA RYI+ L   L  +I T
Sbjct:  204 DLMRLKDLIPSV-TAKDNVTHLDIILEAIRYIDSLQDKLADKIDT 335          
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592910885|gb|GAXK01047490.1| (TSA: Calanus finmarchicus comp75623_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 8.395e-3
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 0
Query:   18 KLKQLIPGMNTSGKD-VSHVEVIEEANRYIEKLHSHLVCQI 57
            +LK LIP M  + KD V+H+++I EA RYI+ L   LV +I
Sbjct:  215 RLKDLIPSM--AAKDNVTHLDIILEAIRYIDSLQDKLVDKI 331          
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592806333|gb|GAXK01148235.1| (TSA: Calanus finmarchicus comp1027492_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 8.493e-3
Identity = 18/53 (33.96%), Postives = 30/53 (56.60%), Query Frame = 0
Query:    5 ELKFQSAFDKDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQI 57
            E K Q    +++ KLK L+P +      VS V++IEE   YI++LH  +  ++
Sbjct:  589 ERKKQKEGHEEMEKLKTLVPTLRVRDGRVSQVDIIEETISYIDQLHRRIAERL 747          
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592910884|gb|GAXK01047491.1| (TSA: Calanus finmarchicus comp75623_c0_seq8 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 1.005e-2
Identity = 20/43 (46.51%), Postives = 28/43 (65.12%), Query Frame = 0
Query:   18 KLKQLIPGMNTSGKD-VSHVEVIEEANRYIEKLHSHLVCQIRT 59
            +LK LIP M  + KD V+H+++I EA RYI+ L   L  +I T
Sbjct:  215 RLKDLIPSM--AAKDNVTHLDIILEAIRYIDSLQDKLADKIDT 337          
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592907828|gb|GAXK01050547.1| (TSA: Calanus finmarchicus comp30721_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 1.726e-2
Identity = 16/39 (41.03%), Postives = 27/39 (69.23%), Query Frame = 0
Query:   15 DLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHL 53
            D+ KLK+++P +  SGK +S +++I EA +YI+ L   L
Sbjct:  104 DMEKLKKMLPDLQQSGK-LSQLDIILEAIQYIKTLQYEL 217          
BLAST of EMLSAG00000001141 vs. C. finmarchicus
Match: gi|592873678|gb|GAXK01083884.1| (TSA: Calanus finmarchicus comp176481_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 5.159e-1
Identity = 15/42 (35.71%), Postives = 26/42 (61.90%), Query Frame = 0
Query:   14 KDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVC 55
            K+L+ L+  +P M    K  S ++++ EA +YIE+L   +VC
Sbjct:  254 KELTSLRTTLPHM----KKASDLDLVLEAIKYIEQLQQKVVC 367          
BLAST of EMLSAG00000001141 vs. L. salmonis peptides
Match: EMLSAP00000001141 (pep:novel supercontig:LSalAtl2s:LSalAtl2s118:431419:431791:-1 gene:EMLSAG00000001141 transcript:EMLSAT00000001141 description:"maker-LSalAtl2s118-augustus-gene-4.18")

HSP 1 Score: 182.956 bits (463), Expect = 8.201e-61
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query:    1 MSRKELKFQSAFDKDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKLKXXAGRXXANDSNDDISRAIKSFARKNP 94
            MSRKELKFQSAFDKDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKLKXXAGRXXANDSNDDISRAIKSFARKNP
Sbjct:    1 MSRKELKFQSAFDKDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQIRTHGFPXKLKXXAGRXXANDSNDDISRAIKSFARKNP 94          
BLAST of EMLSAG00000001141 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold619_size123246-processed-gene-0.28 (protein:Tk05506 transcript:snap_masked-scaffold619_size123246-processed-gene-0.28-mRNA-1 annotation:"transcription factor partial")

HSP 1 Score: 45.8246 bits (107), Expect = 2.239e-7
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 0
Query:    5 ELKFQSAFDKDLSKLKQLIPGMNTSGKDVSHVEVIEEANRYIEKLHSHLVCQI 57
            ELK    F K+  +LK L+P + T  +D+S VE++EE  RYI+ LH  L  +I
Sbjct:   95 ELKKSKKFQKEYGRLKHLVPAL-TEREDLSKVEIVEETIRYIDALHHQLASRI 146          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001141 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001141 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 21
Match NameE-valueIdentityDescription
gi|592910888|gb|GAXK01047487.1|1.898e-446.67TSA: Calanus finmarchicus comp75623_c0_seq4 transc... [more]
gi|592910890|gb|GAXK01047485.1|1.956e-446.67TSA: Calanus finmarchicus comp75623_c0_seq2 transc... [more]
gi|592780422|gb|GAXK01174146.1|3.266e-432.14TSA: Calanus finmarchicus comp230339_c0_seq1 trans... [more]
gi|592910883|gb|GAXK01047492.1|6.428e-446.51TSA: Calanus finmarchicus comp75623_c0_seq9 transc... [more]
gi|592910882|gb|GAXK01047493.1|6.973e-444.44TSA: Calanus finmarchicus comp75623_c0_seq10 trans... [more]
gi|592910885|gb|GAXK01047490.1|8.395e-348.78TSA: Calanus finmarchicus comp75623_c0_seq7 transc... [more]
gi|592806333|gb|GAXK01148235.1|8.493e-333.96TSA: Calanus finmarchicus comp1027492_c1_seq1 tran... [more]
gi|592910884|gb|GAXK01047491.1|1.005e-246.51TSA: Calanus finmarchicus comp75623_c0_seq8 transc... [more]
gi|592907828|gb|GAXK01050547.1|1.726e-241.03TSA: Calanus finmarchicus comp30721_c0_seq1 transc... [more]
gi|592873678|gb|GAXK01083884.1|5.159e-135.71TSA: Calanus finmarchicus comp176481_c0_seq1 trans... [more]

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BLAST of EMLSAG00000001141 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011418.201e-61100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s118:43141... [more]
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BLAST of EMLSAG00000001141 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001141 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001141 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001141 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
snap_masked-scaffold619_size123246-processed-gene-0.282.239e-743.40protein:Tk05506 transcript:snap_masked-scaffold619... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s118supercontigLSalAtl2s118:431419..431791 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s118-augustus-gene-4.18
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001141 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001141EMLSAT00000001141-696988Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s118:431419..431791-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001141-683907 ID=EMLSAG00000001141-683907|Name=EMLSAG00000001141|organism=Lepeophtheirus salmonis|type=gene|length=373bp|location=Sequence derived from alignment at LSalAtl2s118:431419..431791- (Lepeophtheirus salmonis)
ATGAGTCGTAAAGAGTTAAAGTTTCAAAGTGCTTTTGACAAGGATTTATC TAAATTAAAACAGTTGATTCCAGGAATGAACACTTCAGGAAAAGACGTTT CACACGTAAGATTTACTTTTTTTCCAATATATGATATTGTTATATGCCGC ACTAAAAAGGATTATAACGCTTGATTTCCATTCATAATTATAGGTGGAGG TGATAGAAGAGGCGAATCGATACATTGAAAAGCTTCACTCCCATTTGGTA TGCCAAATCCGTACTCACGGATTTCCTGAWAAACTCAAGRCACAMGCAGG AAGARCCKCCGCCAATGACTCTAATGATGATATATCGAGGGCCATTAAAA GCTTCGCAAGGAAGAACCCCTAA
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