EMLSAG00000001142, EMLSAG00000001142-683908 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001142
Unique NameEMLSAG00000001142-683908
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592831544|gb|GAXK01126000.1| (TSA: Calanus finmarchicus comp604092_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 1.491e-4
Identity = 19/48 (39.58%), Postives = 32/48 (66.67%), Query Frame = 0 
Query:   43 KRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            +R R++QID  F+ L+  IP  A +  IS+++I+ ++V YI+ L T L
Sbjct:  184 ERNRVKQIDVGFEKLRVTIPTAAAQKKISRVKILSSAVDYIQHLHTLL 327
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592831545|gb|GAXK01125999.1| (TSA: Calanus finmarchicus comp604092_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 2.115e-4
Identity = 19/48 (39.58%), Postives = 32/48 (66.67%), Query Frame = 0 
Query:   43 KRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            +R R++QID  F+ L+  IP  A +  IS+++I+ ++V YI+ L T L
Sbjct:  184 ERNRVKQIDVGFEKLRVTIPTAAAQKKISRVKILSSAVDYIQHLHTLL 327
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592811828|gb|GAXK01142740.1| (TSA: Calanus finmarchicus comp1826372_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 4.796e-4
Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 0 
Query:   43 KRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLK-PSD 94
            +R R+Q ++  F+TL+  IP  A    +SK+ I++ +++YI+ LR+ L  PSD
Sbjct:  139 ERSRVQTVNSGFETLRKHIPTAAALKKMSKVNILNEAMEYIQYLRSVLHNPSD 297
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592751069|gb|GAXK01203344.1| (TSA: Calanus finmarchicus comp2480523_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.5058 bits (88), Expect = 2.901e-3
Identity = 17/49 (34.69%), Postives = 30/49 (61.22%), Query Frame = 0 
Query:   43 KRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLK 91
            +R R+Q ++R F+ L+  IP  A    +SK+ I++ +V YI+ L   L+
Sbjct:  427 ERTRVQTVNRGFEVLRQNIPSAAPVKKMSKIHILNHAVGYIQYLHQLLQ 573
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592758387|gb|GAXK01196026.1| (TSA: Calanus finmarchicus comp474161_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 2.961e-3
Identity = 16/48 (33.33%), Postives = 33/48 (68.75%), Query Frame = 0 
Query:   47 IQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSD 94
            +++I+ +   L+ L+P +A K  +++L+II  +++YI+ LR KL+  D
Sbjct:  140 VEEIELDILRLQQLVPTMAAKDNVTQLDIILEAIRYIDSLRDKLEEKD 283
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592758388|gb|GAXK01196025.1| (TSA: Calanus finmarchicus comp474161_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 3.395e-3
Identity = 16/48 (33.33%), Postives = 33/48 (68.75%), Query Frame = 0 
Query:   47 IQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSD 94
            +++++ E   L+ L+P +A K  +++L+II  +++YI+ LR KL+  D
Sbjct:  173 VEEMELEILRLQKLVPTMAAKDNVTQLDIILEAIRYIDSLRDKLEEKD 316
[Close]
BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592753617|gb|GAXK01200796.1| (TSA: Calanus finmarchicus comp293978_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 3.014e-2
Identity = 18/52 (34.62%), Postives = 30/52 (57.69%), Query Frame = 0 
Query:   43 KRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSD 94
            +RRR Q I+  F +L+  IP+V   + +SK++ +  +  YI+ L   LK  D
Sbjct:  913 ERRRTQSINAAFSSLRDCIPNVPCDTKLSKIKTLRLATSYIDYLINVLKSDD 1068
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592910884|gb|GAXK01047491.1| (TSA: Calanus finmarchicus comp75623_c0_seq8 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 9.578e-2
Identity = 15/34 (44.12%), Postives = 24/34 (70.59%), Query Frame = 0 
Query:   57 LKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            LK LIP +A K  ++ L+II  +++YI+ L+ KL
Sbjct:  218 LKDLIPSMAAKDNVTHLDIILEAIRYIDSLQDKL 319
[Close]
BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592910885|gb|GAXK01047490.1| (TSA: Calanus finmarchicus comp75623_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 9.578e-2
Identity = 15/34 (44.12%), Postives = 24/34 (70.59%), Query Frame = 0 
Query:   57 LKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            LK LIP +A K  ++ L+II  +++YI+ L+ KL
Sbjct:  218 LKDLIPSMAAKDNVTHLDIILEAIRYIDSLQDKL 319
[Close]
BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592821196|gb|GAXK01133372.1| (TSA: Calanus finmarchicus comp1332830_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 1.022e-1
Identity = 15/44 (34.09%), Postives = 28/44 (63.64%), Query Frame = 0 
Query:   43 KRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEEL 86
            +RRR+Q I+  F+ L+  IP + ++  +SKL+ +  ++ YI  L
Sbjct:  339 ERRRMQSINDSFEGLRQHIPTLPHEKKLSKLDTLRLTIGYISYL 470
[Close]
BLAST of EMLSAG00000001142 vs. L. salmonis peptides
Match: EMLSAP00000001142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s118:541400:541962:-1 gene:EMLSAG00000001142 transcript:EMLSAT00000001142 description:"maker-LSalAtl2s118-augustus-gene-5.21")

HSP 1 Score: 284.648 bits (727), Expect = 2.724e-99
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MTCDPRSDDENALSKREEKFNKRKSGIFDLNDFEELDEEDSGKRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSDQEKLNHSSSSTTLSTTDIESIDSFSSSLRSTYSNSSSCSGKVLPPSVNRI 144
            MTCDPRSDDENALSKREEKFNKRKSGIFDLNDFEELDEEDSGKRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSDQEKLNHSSSSTTLSTTDIESIDSFSSSLRSTYSNSSSCSGKVLPPSVNRI
Sbjct:    1 MTCDPRSDDENALSKREEKFNKRKSGIFDLNDFEELDEEDSGKRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSDQEKLNHSSSSTTLSTTDIESIDSFSSSLRSTYSNSSSCSGKVLPPSVNRI 144
[Close]
BLAST of EMLSAG00000001142 vs. L. salmonis peptides
Match: EMLSAP00000001681 (pep:novel supercontig:LSalAtl2s:LSalAtl2s128:838618:857555:-1 gene:EMLSAG00000001681 transcript:EMLSAT00000001681 description:"maker-LSalAtl2s128-snap-gene-8.19")

HSP 1 Score: 45.4394 bits (106), Expect = 7.472e-7
Identity = 22/75 (29.33%), Postives = 42/75 (56.00%), Query Frame = 0 
Query:   16 REEKFNKRKSGIFDLNDFEELDEEDSGKRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            +++ +   +  I  L     L      K+ R    + E++ L+S++P VA+K G+SK EI++ ++KYI+ L  +L
Sbjct:   53 KQKDYKTPRRAIPRLPSLATLQGRRVAKKYRKYARNMEYRRLRSIVPAVAHKRGVSKGEILEEAIKYIDSLHEQL 127
[Close]
BLAST of EMLSAG00000001142 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1041_size68021-snap-gene-0.12 (protein:Tk05343 transcript:maker-scaffold1041_size68021-snap-gene-0.12-mRNA-1 annotation:"transcription factor 23")

HSP 1 Score: 53.9138 bits (128), Expect = 1.024e-9
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 0 
Query:   50 IDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLK---PSDQEKLNH-----SSSSTTLSTTDIESIDSFSSSL 122
            ++RE + L+SLIP+++++  +S+L+IIDASV YIE L+ +LK   P +  +L+      SS  T  S +DIE+ DS  SSL
Sbjct:  132 LERELRMLQSLIPEISSQHQLSELQIIDASVSYIEHLQNQLKQHIPGNWFELSSPRSETSSDWTASSDSDIEN-DSGGSSL 211
[Close]
BLAST of EMLSAG00000001142 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1041_size68021-snap-gene-0.10 (protein:Tk05340 transcript:maker-scaffold1041_size68021-snap-gene-0.10-mRNA-1 annotation:"transcription factor partial")

HSP 1 Score: 48.1358 bits (113), Expect = 1.004e-7
Identity = 23/59 (38.98%), Postives = 39/59 (66.10%), Query Frame = 0 
Query:   48 QQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSDQEKLNHSSSSTT 106
            + ++ EF TLK+LIP ++ +  + +L+IIDA V YI+ LR +L P  +    H+S++ T
Sbjct:   46 RNLETEFNTLKTLIPGLSERPNLEELDIIDACVSYIQSLRNQLYPRSR----HTSAART 100
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001142 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592831544|gb|GAXK01126000.1|1.491e-439.58TSA: Calanus finmarchicus comp604092_c0_seq2 trans... [more]
gi|592831545|gb|GAXK01125999.1|2.115e-439.58TSA: Calanus finmarchicus comp604092_c0_seq1 trans... [more]
gi|592811828|gb|GAXK01142740.1|4.796e-437.74TSA: Calanus finmarchicus comp1826372_c0_seq1 tran... [more]
gi|592751069|gb|GAXK01203344.1|2.901e-334.69TSA: Calanus finmarchicus comp2480523_c0_seq1 tran... [more]
gi|592758387|gb|GAXK01196026.1|2.961e-333.33TSA: Calanus finmarchicus comp474161_c0_seq2 trans... [more]
gi|592758388|gb|GAXK01196025.1|3.395e-333.33TSA: Calanus finmarchicus comp474161_c0_seq1 trans... [more]
gi|592753617|gb|GAXK01200796.1|3.014e-234.62TSA: Calanus finmarchicus comp293978_c0_seq1 trans... [more]
gi|592910884|gb|GAXK01047491.1|9.578e-244.12TSA: Calanus finmarchicus comp75623_c0_seq8 transc... [more]
gi|592910885|gb|GAXK01047490.1|9.578e-244.12TSA: Calanus finmarchicus comp75623_c0_seq7 transc... [more]
gi|592821196|gb|GAXK01133372.1|1.022e-134.09TSA: Calanus finmarchicus comp1332830_c0_seq1 tran... [more]

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BLAST of EMLSAG00000001142 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000011422.724e-99100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s118:54140... [more]
EMLSAP000000016817.472e-729.33pep:novel supercontig:LSalAtl2s:LSalAtl2s128:83861... [more]
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BLAST of EMLSAG00000001142 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001142 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001142 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001142 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold1041_size68021-snap-gene-0.121.024e-943.21protein:Tk05343 transcript:maker-scaffold1041_size... [more]
maker-scaffold1041_size68021-snap-gene-0.101.004e-738.98protein:Tk05340 transcript:maker-scaffold1041_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s118supercontigLSalAtl2s118:541400..541962 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s118-augustus-gene-5.21
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001142 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001142EMLSAT00000001142-696989Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s118:541400..541962-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001142-683908 ID=EMLSAG00000001142-683908|Name=EMLSAG00000001142|organism=Lepeophtheirus salmonis|type=gene|length=563bp|location=Sequence derived from alignment at LSalAtl2s118:541400..541962- (Lepeophtheirus salmonis)
ATGACTTGCGATCCACGATCTGACGATGAAAATGCCTTGTCCAAAAGAGA
AGAGAAGTTCAACAAACGGAAATCCGGGATTTTTGATTTGAATGACTTTG
AAGAGTTGGATGAAGAAGATTCTGGGAAACGTAGGAGGATACAGCAAATT
GATAGAGAGTTTAAAACTCTCAAATCCCTCATACCAGATGTTGCAAATAA
ATCTGGCATTAGTAAAGTAAGATCCTGAATTCTTGTATTTTATATTTGAT
TTAATGTAAAATGTATCAATAAAATGTATATTTGTGAAAAATTAGATTCA
ACTTATTATAATATATTCATATTATTATTTCTTAAATATTTCAGTTAGAA
ATAATTGATGCATCCGTCAAGTACATTGAGGAATTAAGGACGAAACTCAA
GCCTTCAGACCAAGAAAAGTTAAATCATTCTTCGTCGTCGACAACATTGT
CTACAACAGATATTGAATCCATAGACAGTTTTTCATCATCTCTTCGTAGT
ACTTATAGCAACAGCAGTAGCTGTAGTGGTAAAGTGCTGCCACCCTCAGT
TAATCGCATTTAA
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