EMLSAG00000001142, EMLSAG00000001142-683908 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001142
Unique NameEMLSAG00000001142-683908
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592910883|gb|GAXK01047492.1| (TSA: Calanus finmarchicus comp75623_c0_seq9 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.287e-1
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   57 LKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            LK LIP V  K  ++ L+II  +++YI+ L+ KL
Sbjct:  216 LKDLIPSVTAKDNVTHLDIILEAIRYIDSLQDKL 317
[Close]
BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592910882|gb|GAXK01047493.1| (TSA: Calanus finmarchicus comp75623_c0_seq10 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 1.364e-1
Identity = 15/34 (44.12%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   57 LKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            LK LIP V  K  ++ L+II  +++YI+ L+ KL
Sbjct:  216 LKDLIPSVTAKDNVTHLDIILEAIRYIDSLQDKL 317
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592757705|gb|GAXK01196708.1| (TSA: Calanus finmarchicus comp248031_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 1.678e-1
Identity = 15/38 (39.47%), Postives = 26/38 (68.42%), Query Frame = 0 
Query:   53 EFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            E   L+ LIP ++ K  +++L+II  +++YI+ LR KL
Sbjct:   89 ELLRLQKLIPTMSIKDNVTQLDIILEAIRYIDSLRDKL 202
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592757704|gb|GAXK01196709.1| (TSA: Calanus finmarchicus comp248031_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.967e-1
Identity = 15/38 (39.47%), Postives = 26/38 (68.42%), Query Frame = 0 
Query:   53 EFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            E   L+ LIP ++ K  +++L+II  +++YI+ LR KL
Sbjct:   89 ELLRLQKLIPTMSIKDNVTQLDIILEAIRYIDSLRDKL 202
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592763541|gb|GAXK01191027.1| (TSA: Calanus finmarchicus comp2172861_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 2.603e-1
Identity = 17/48 (35.42%), Postives = 30/48 (62.50%), Query Frame = 0 
Query:   43 KRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            +R R++ ++  F  LK  +PD+ NKS  SK+E +  ++ YI+ L+  L
Sbjct:    8 ERTRVRGVNDTFGKLKMYVPDMKNKS--SKVETLRGAIDYIKRLKDLL 145
[Close]
BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592898637|gb|GAXK01059738.1| (TSA: Calanus finmarchicus comp928222_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 3.122e-1
Identity = 17/48 (35.42%), Postives = 31/48 (64.58%), Query Frame = 0 
Query:   43 KRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            +R R++ ++  F  LK  +PD+ NKS  SK+E +  +++YI+ L+  L
Sbjct:  448 ERTRVRGVNNGFGKLKLHVPDLKNKS--SKVETLRGAIEYIKRLKDLL 585
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592910887|gb|GAXK01047488.1| (TSA: Calanus finmarchicus comp75623_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 3.593e-1
Identity = 14/34 (41.18%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   57 LKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            LK LIP +  K  ++ L+II  +++YI+ L+ KL
Sbjct:  234 LKDLIPSMTAKDNVTHLDIILEAIRYIDSLQDKL 335
[Close]
BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592910886|gb|GAXK01047489.1| (TSA: Calanus finmarchicus comp75623_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 3.876e-1
Identity = 14/34 (41.18%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   57 LKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            LK LIP +  K  ++ L+II  +++YI+ L+ KL
Sbjct:  234 LKDLIPSMTAKDNVTHLDIILEAIRYIDSLQDKL 335
[Close]
BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592910890|gb|GAXK01047485.1| (TSA: Calanus finmarchicus comp75623_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 4.409e-1
Identity = 14/34 (41.18%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   57 LKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            LK LIP +  K  ++ L+II  +++YI+ L+ KL
Sbjct:  326 LKDLIPSMTAKDNVTHLDIILEAIRYIDSLQDKL 427
[Close]
BLAST of EMLSAG00000001142 vs. C. finmarchicus
Match: gi|592910891|gb|GAXK01047484.1| (TSA: Calanus finmarchicus comp75623_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 4.623e-1
Identity = 14/34 (41.18%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   57 LKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            LK LIP +  K  ++ L+II  +++YI+ L+ KL
Sbjct:  326 LKDLIPSMTAKDNVTHLDIILEAIRYIDSLQDKL 427
[Close]
BLAST of EMLSAG00000001142 vs. L. salmonis peptides
Match: EMLSAP00000001142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s118:541400:541962:-1 gene:EMLSAG00000001142 transcript:EMLSAT00000001142 description:"maker-LSalAtl2s118-augustus-gene-5.21")

HSP 1 Score: 284.648 bits (727), Expect = 2.724e-99
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MTCDPRSDDENALSKREEKFNKRKSGIFDLNDFEELDEEDSGKRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSDQEKLNHSSSSTTLSTTDIESIDSFSSSLRSTYSNSSSCSGKVLPPSVNRI 144
            MTCDPRSDDENALSKREEKFNKRKSGIFDLNDFEELDEEDSGKRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSDQEKLNHSSSSTTLSTTDIESIDSFSSSLRSTYSNSSSCSGKVLPPSVNRI
Sbjct:    1 MTCDPRSDDENALSKREEKFNKRKSGIFDLNDFEELDEEDSGKRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSDQEKLNHSSSSTTLSTTDIESIDSFSSSLRSTYSNSSSCSGKVLPPSVNRI 144
[Close]
BLAST of EMLSAG00000001142 vs. L. salmonis peptides
Match: EMLSAP00000001681 (pep:novel supercontig:LSalAtl2s:LSalAtl2s128:838618:857555:-1 gene:EMLSAG00000001681 transcript:EMLSAT00000001681 description:"maker-LSalAtl2s128-snap-gene-8.19")

HSP 1 Score: 45.4394 bits (106), Expect = 7.472e-7
Identity = 22/75 (29.33%), Postives = 42/75 (56.00%), Query Frame = 0 
Query:   16 REEKFNKRKSGIFDLNDFEELDEEDSGKRRRIQQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKL 90
            +++ +   +  I  L     L      K+ R    + E++ L+S++P VA+K G+SK EI++ ++KYI+ L  +L
Sbjct:   53 KQKDYKTPRRAIPRLPSLATLQGRRVAKKYRKYARNMEYRRLRSIVPAVAHKRGVSKGEILEEAIKYIDSLHEQL 127
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BLAST of EMLSAG00000001142 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1041_size68021-snap-gene-0.12 (protein:Tk05343 transcript:maker-scaffold1041_size68021-snap-gene-0.12-mRNA-1 annotation:"transcription factor 23")

HSP 1 Score: 53.9138 bits (128), Expect = 1.024e-9
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 0 
Query:   50 IDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLK---PSDQEKLNH-----SSSSTTLSTTDIESIDSFSSSL 122
            ++RE + L+SLIP+++++  +S+L+IIDASV YIE L+ +LK   P +  +L+      SS  T  S +DIE+ DS  SSL
Sbjct:  132 LERELRMLQSLIPEISSQHQLSELQIIDASVSYIEHLQNQLKQHIPGNWFELSSPRSETSSDWTASSDSDIEN-DSGGSSL 211
[Close]
BLAST of EMLSAG00000001142 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1041_size68021-snap-gene-0.10 (protein:Tk05340 transcript:maker-scaffold1041_size68021-snap-gene-0.10-mRNA-1 annotation:"transcription factor partial")

HSP 1 Score: 48.1358 bits (113), Expect = 1.004e-7
Identity = 23/59 (38.98%), Postives = 39/59 (66.10%), Query Frame = 0 
Query:   48 QQIDREFKTLKSLIPDVANKSGISKLEIIDASVKYIEELRTKLKPSDQEKLNHSSSSTT 106
            + ++ EF TLK+LIP ++ +  + +L+IIDA V YI+ LR +L P  +    H+S++ T
Sbjct:   46 RNLETEFNTLKTLIPGLSERPNLEELDIIDACVSYIQSLRNQLYPRSR----HTSAART 100
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001142 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001142 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592910883|gb|GAXK01047492.1|1.287e-144.12TSA: Calanus finmarchicus comp75623_c0_seq9 transc... [more]
gi|592910882|gb|GAXK01047493.1|1.364e-144.12TSA: Calanus finmarchicus comp75623_c0_seq10 trans... [more]
gi|592757705|gb|GAXK01196708.1|1.678e-139.47TSA: Calanus finmarchicus comp248031_c0_seq1 trans... [more]
gi|592757704|gb|GAXK01196709.1|1.967e-139.47TSA: Calanus finmarchicus comp248031_c0_seq2 trans... [more]
gi|592763541|gb|GAXK01191027.1|2.603e-135.42TSA: Calanus finmarchicus comp2172861_c0_seq1 tran... [more]
gi|592898637|gb|GAXK01059738.1|3.122e-135.42TSA: Calanus finmarchicus comp928222_c0_seq3 trans... [more]
gi|592910887|gb|GAXK01047488.1|3.593e-141.18TSA: Calanus finmarchicus comp75623_c0_seq5 transc... [more]
gi|592910886|gb|GAXK01047489.1|3.876e-141.18TSA: Calanus finmarchicus comp75623_c0_seq6 transc... [more]
gi|592910890|gb|GAXK01047485.1|4.409e-141.18TSA: Calanus finmarchicus comp75623_c0_seq2 transc... [more]
gi|592910891|gb|GAXK01047484.1|4.623e-141.18TSA: Calanus finmarchicus comp75623_c0_seq1 transc... [more]

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BLAST of EMLSAG00000001142 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000011422.724e-99100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s118:54140... [more]
EMLSAP000000016817.472e-729.33pep:novel supercontig:LSalAtl2s:LSalAtl2s128:83861... [more]
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BLAST of EMLSAG00000001142 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001142 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001142 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001142 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold1041_size68021-snap-gene-0.121.024e-943.21protein:Tk05343 transcript:maker-scaffold1041_size... [more]
maker-scaffold1041_size68021-snap-gene-0.101.004e-738.98protein:Tk05340 transcript:maker-scaffold1041_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s118supercontigLSalAtl2s118:541400..541962 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s118-augustus-gene-5.21
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001142 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001142EMLSAT00000001142-696989Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s118:541400..541962-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001142-683908 ID=EMLSAG00000001142-683908|Name=EMLSAG00000001142|organism=Lepeophtheirus salmonis|type=gene|length=563bp|location=Sequence derived from alignment at LSalAtl2s118:541400..541962- (Lepeophtheirus salmonis)
ATGACTTGCGATCCACGATCTGACGATGAAAATGCCTTGTCCAAAAGAGA
AGAGAAGTTCAACAAACGGAAATCCGGGATTTTTGATTTGAATGACTTTG
AAGAGTTGGATGAAGAAGATTCTGGGAAACGTAGGAGGATACAGCAAATT
GATAGAGAGTTTAAAACTCTCAAATCCCTCATACCAGATGTTGCAAATAA
ATCTGGCATTAGTAAAGTAAGATCCTGAATTCTTGTATTTTATATTTGAT
TTAATGTAAAATGTATCAATAAAATGTATATTTGTGAAAAATTAGATTCA
ACTTATTATAATATATTCATATTATTATTTCTTAAATATTTCAGTTAGAA
ATAATTGATGCATCCGTCAAGTACATTGAGGAATTAAGGACGAAACTCAA
GCCTTCAGACCAAGAAAAGTTAAATCATTCTTCGTCGTCGACAACATTGT
CTACAACAGATATTGAATCCATAGACAGTTTTTCATCATCTCTTCGTAGT
ACTTATAGCAACAGCAGTAGCTGTAGTGGTAAAGTGCTGCCACCCTCAGT
TAATCGCATTTAA
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