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Associated RNAi Experiments
Homology
BLAST of EMLSAG00000001192 vs. C. finmarchicus
Match: gi|592926552|gb|GAXK01031893.1| (TSA: Calanus finmarchicus comp20855_c10_seq2 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 4.972e+0 Identity = 12/35 (34.29%), Postives = 20/35 (57.14%), Query Frame = 0
Query: 48 HFSIKGNQELGIRLARIIKEKKLFGGKNATDLVLI 82
HF ++ N++ +ARI+K K F A +L+ I
Sbjct: 1532 HFPLRRNKDQKYPVARILKLKYTFPASQARNLIFI 1636
BLAST of EMLSAG00000001192 vs. C. finmarchicus
Match: gi|592926553|gb|GAXK01031892.1| (TSA: Calanus finmarchicus comp20855_c10_seq1 transcribed RNA sequence) HSP 1 Score: 27.7202 bits (60), Expect = 4.974e+0 Identity = 12/35 (34.29%), Postives = 20/35 (57.14%), Query Frame = 0
Query: 48 HFSIKGNQELGIRLARIIKEKKLFGGKNATDLVLI 82
HF ++ N++ +ARI+K K F A +L+ I
Sbjct: 1544 HFPLRRNKDQKYPVARILKLKYTFPASQARNLIFI 1648
BLAST of EMLSAG00000001192 vs. L. salmonis peptides
Match: EMLSAP00000001192 (pep:novel supercontig:LSalAtl2s:LSalAtl2s119:433027:440481:-1 gene:EMLSAG00000001192 transcript:EMLSAT00000001192 description:"maker-LSalAtl2s119-snap-gene-4.17") HSP 1 Score: 178.333 bits (451), Expect = 2.762e-59 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
Query: 1 MLQSDDLHTRWMAINEFLQKESEVNERMKYISFPFGLKDSNLYDDGTHFSIKGNQELGIRLARIIKEKKLFGGKNATDLVLIFPLR 86
MLQSDDLHTRWMAINEFLQKESEVNERMKYISFPFGLKDSNLYDDGTHFSIKGNQELGIRLARIIKEKKLFGGKNATDLVLIFPLR
Sbjct: 1 MLQSDDLHTRWMAINEFLQKESEVNERMKYISFPFGLKDSNLYDDGTHFSIKGNQELGIRLARIIKEKKLFGGKNATDLVLIFPLR 86
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001192 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
Match Name | E-value | Identity | Description | |
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BLAST of EMLSAG00000001192 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
Match Name | E-value | Identity | Description | |
EMLSAP00000001192 | 2.762e-59 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s119:43302... | [more] |
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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
LSalAtl2s119 | supercontig | LSalAtl2s119:433027..440481 - |
Analyses
This gene is derived from or has results from the following analyses
Properties
Property Name | Value |
Logic name | ensemblgenomes |
Description | maker-LSalAtl2s119-snap-gene-4.17 |
Biotype | protein_coding |
Evidence | IEA |
Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s119:433027..440481- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000001192-683958 ID=EMLSAG00000001192-683958|Name=EMLSAG00000001192|organism=Lepeophtheirus salmonis|type=gene|length=7455bp|location=Sequence derived from alignment at LSalAtl2s119:433027..440481- (Lepeophtheirus salmonis) ATGCTTCAAAGTGATGATTTGCATACAAGATGGATGGCTATTAATGAATT
CTTACAAAAGGAATCAGAAGTTAATGAAAGGATGAAATACATTTCTTTTC
CCTTCGGATTGAAGGACTCAAATCTATATGATGATGGTAATGTTGTTATT
TTAAAAATAAATCCTCATATCTATTTTGTGATGTATGTATTTACTTTAAT
ATGTCATATAAACAACTGGGTTGTCCACATTTGTTGATTTGGATGGGCTT
TAGCTACCCTAGGGGCGTCCGCAGGATTATATATACATATATTTTTTTTT
AAATAAAAAAATTATTTAAAACTTAAATTTTTGAATTTTATTTAAGTCCT
CATCTATTCACAGAAAATTATTTTTTTTGGAAATTTTTTTGAGAAATCTA
TAGGCATTGTCCAAAAAAAAAATTTTTTGTGGAAAAAAAATTATAAAAAT
TCAAATATTAAATTTTTTAGAAAATTTACAGCTATTCACAAAAAATATAG
TTTTTAGAAAAAAATTTCTAAAATCCATAGCTATGGCGAAAAAAAATTGA
AAAATTAATAGCTGTTCCCAAAAATTAAAAAATTTGTAAAAAATTTCAAA
TATGAAATCTTTTGAAATTTTTTACAAATATTCATTATTTTGTAGGAAAA
TTTCAAAAATACACAGCTATTCAGAGAAAATTAATTTTTTTTTTTTGAAA
AAAAGAATTAATTTAATGTTCTAGTAAAAAGCAAATAATCCTTAATATGA
GGGGGGTTGCTCTATATATAGGGATGAGATGGGACCTATATTAACTATTA
AATACAGATATAGCCCTTAAAATGCCCATAATATTCAGTTGTCAATATAT
CCCCTACGTGATTAAAAGGCTGTTTGGTGTAAAATGTGAATATATTCGTG
CTGACTTTGCCAACAAATTATTCAAATTCAAATCGAGATACAACTTTAAC
ACAAACTACAGGGTGCGGTTTCACAATTAAGATTTTTTTAAACCGGTTTT
TCTTGGGCACCCTTAGTCATACAGCTTTAAAAACCAGTTTATCTGATTTA
GCAGACAATTTGTATAAGTTCTGTTTACAAGGTGTTGACAATGTCCTCCG
ACTACGACCGTCGTGCAGGGTTAATTGTCGCCCTCCGTGCAGGCCTTACG
CCCAAAGAGATAATCGACTTTCTCAAGTTATCCTCTGCCACCGTGTACAA
AGTCGCATATGAGTTTTGTAGGTTGCAGCCGGCAGCTGGTATCTCTACCA
GCAAGACGGCGCACCAGCTCATACCAGCCATCTGGTAAAAAATTGGTTTT
CGGATGTTCTGGTCTAAGGAAATGTGACCCCTAGCTCCCTGGACTGCAAT
TCTTTGGACTATTTCGTGTGAGGCGTCTTAGAGAGGGAGTTCAACAATTT
GGCTTCTCTGAGAGCCTCCATTATTGAGGCTATGAACAATATGAAAAAAG
ATCACCTGATCAAGATGTACATTAGGTTCCGGGTAAGGTTGGAGGCAGTG
GTTTAGGCTGAGGGMGGTCGGATTGAATGATTAGGTTTATGGAGGGTCCC
CACGTTTTTATATAAATGGATTTGTTAATATCTCTACTAATTTAAGAAAT
AAAAAGTTTTATGTCCTGGTATCGAAAATTCTTTATTGTAAAACCACACC
CGGTATATAATTGTTATTCTTAGAAAAAAATAATCAGGCAAGTGTTTTAC
ATGTAAAATGTTCCTAAAGTTCAGTTTTTAATTTATCCCATACGTGATTT
ATGACGGTTTTTTTTTATAGGAAAATGCATTTGTAATTTCCTTTATTTTG
TTGACCCTGCCCGAAAACATACTACATGGACAATACCTTGAACTGGGATA
TTTACTTTCAATATTTGGGTGACTATATCTTCGCTAATATTGAAGCTACA
AGATTCAAATTATGCTATTATCATTAGTAGTAGATTGTATGTTTTTAATT
ACTATTTATGTCTGTTATAAATACCAAATTTATAAAATGCATTTACATTT
TGAAGGCAAAGTATCTTCAATTCACAATGCTAAACTTTTTGCTATCTGGT
TTTGATTTTAAAACAAAGTTAACATTTTAAGGATATATTACTATTAACTA
TTTTATTAGATTAAGATATGATACAGTTTACTCAAAATATTTTTGTAACT
TGTTCATGCAGCTATTGAAATGCAATATTGTTTTAATTATATTCGTTAAA
AGTTAATTATTTGGATTGCACACCACTGTCAGTATAAAATAGTCACAAGT
TATCTGAAGGAATGCAACTGTACCGAGTGGTGCATTAAAATCTGAATACT
GAATTTTAAACTTTAACAAGATATAATTTATTAATTAACTATAGAATTTC
AACAAAATTAATACTATAAATATATGTGTATCTGAGCTCTCTTAATCATT
AATATAGCAGCCCTTAACGGCAATGATGGCTTCCATGTGGCAGCGGAAGG
CTGGGCATCTGTTGCAGAGGMATTCATCTGTCATGGCATCCCAGTACTGG
CTGACAGTAGTTTCGAATGCCTTTGGGGTTGGATGACGGACACTGCAGGC
ATTCCCCTCTACATGTATCCAAAACGGAGTTGCATCAGGGCTGTGGGTGG
GCCAAAAGTGTGAAAAAAGAGTTTAAGCGCTTTGATTGAGCGAATAAAAA
TTCGTTGATCACGTTCAAGTGTCATTTTCTCGACCCCTCAAACTAGTTTT
AATACCCCTACACACACACTAATGGAGATTCGGCTATATTAATTTACAAA
TTATGAATGTTTTTTATTTTTATGTTTCAGGTACTCATTTTTCCATTAAG
GGTAATCAAGAACTTGGAATCCGTTTAGCCAGAATTATAAAAGAGAAAAA
ACTTTTTGGGGGAAAGAATGCTACTGATTTAGTCATTAGTGAAGGACACT
GACTGCTCACTTCATCTTGATCAATGAGAGATTTTATATAATATATTATT
AGTTTCATTTTTGAATAATTGCTTAAATTTTTGGATTGTTTGTGATATAT
AATATTTTTTTTGCTTATTTTGATATTTATGATAAGATTAGATTTTTTAC
TACTACATAAAATAAAATATTAATAGTTTTTTAGGATAAACATTTCCATT
TTTTACTTTCACTGCATAAATAATCCAAATTTTCCGACTGACATATTTTT
TCTGACACAAATAATCTATGGAGAGGGTATCACATCCATTGGCGACAACC
TGGAAGGAAGGGCACTTATTATTTTATAATGTGCAAGTATTTGTTATACG
TGAGTTATACGTAAGCCCCTATCCCCAGCCGACTAGATTACTATTTAATT
AGAATCTAAATTGTTTTTATTTATATATTTTCTATATAATTATTAATAAA
GCAAAGTATTTCTGTCTGTGAAGAACTCATCTATGAGTGTGTACTTAATA
TTTTAGAGCTGCGTGATCTAATAAATAAAAATGTAGCAACGAGCGTGTAT
ACCTATAGCACAGCGTATCCAATAAAAAAAGAAAAGTGTAGTACATATAG
TATTGAGTAACTAATTGTGAGTGTGCTCATGAAAAACGGAGAGTAACATT
TAAAGATTATTGGAGAGTGATAATTGGTTTTTAACCTGTAAGGAATTCCC
AAATGGTGGGGCATGGCGGAGTTTCTAAGTCGAGAATGACTGGTGAGACA
GAAGAACCACTGCTTCAAAATTTCACAAATTTCAACCAACTTCCCCAAAT
TTTCTACCTAATTTCAAATCACAACAAAAACAACCAATATATGACAATAG
TTAGTCATGTTTGGGTATAAGTGACAACATTGTTGGGTCAGAAATGTCAA
CAGCGGGTTCTTGCAAACTTACTCGTGGTCACGTCTCTCCTTGGTGTAAC
AGGTGAGAAACAGAACACCCATTATTAAGTAATTACTCATACGTGTATAT
ATTCTTATATTTATTTTATTTAGTGGGTGTAGGTTGTGATGATATTATAT
GCTAAGGATTAAGATTTGTGAATGCACAGATAAAAGCGAGAGAAGTTCGA
GAATGCCTGCAATGCAACAGCTCTTCCAAGGTTGGTGCGAATTAGCGAGA
ATGCTGGAGGCGTCAGCGACGTTCTCCAGAACGAAGCCATCATCAACCTC
AACAGGCTGGMGGACGAGNTTCAGCACTATTTTCCTGACTTGAAAGGCAA
CAACCCAATGATGAAGTTAACGAGGGTTCCCTTCAGCTTTCGAGTTGACA
ACTTCGGAGAGGAAGGAGGAGACATCGAAGACCAGTTTCTTGACCTGGTG
CATGATTCTGCAGAAAAGGATGTTTTTTGCAGAGAAAAGCCTGAAGGCAT
TCTGGTCCACTATATATGGTTCGTATCCTCGTGTTGCTGTGATGGTGCTC
ACACTACTGGTTGCATTTCCCCCAAGTCGGCGTTTTCGAGCATGGAGCAC
TCGTCGAGACAAAACTAATGGAAAAGTTTCATTAATGCGATAATTGTTAT
TAAAAAAATATAAGATATGCATACAAAAATTAAGGGACGTAAAAGAGCAC
AACTAGCAATACCAGGTACTGCCACTCGTATATTATAAAACAAAAATACA
AAATGAATTTCAGTTCCAATAGCATAATTGGCTAAATACAACTTAATGTG
AGGAATATTTTTTTGTTTTGTGTTGGGAGGTACATTTAATCTGTTCATTC
TCAGAAAAGTTTATATTCGTCCTTCATTCGTACAATTTTGAACTGTGGAA
AAAACACAAAGAAAAAAATATTGTGTGGACGTTGAAAGCAATCCAGTAAT
TTTGGAGCTTGTTAACATAAATGTAAAGTATTATATTTTCCCATAAAAGA
TCCCTTGTTACTGTTAGGCATTTCCTTAAAATGCCATATCCAATTTTCAT
ATTTAGAATTTATACACAATAGGAAACCTGGTTAAACTTAAATAGATCAC
CTACACTAATCAGTTGCTATTTTAATTTCATTTGCCTGACCGTTAATCAC
AAGTTTGGTTGTATTTTTATTCTGGAGCGTCTTACAATCAAAAACTTGGT
CTTAATGACTATGACTTGGGAGATTAAATTCATAAGATATAGTTGCTGAA
GTGATATTAATTCCTGTGATAAGAGAACATTCCTGTAAATATTAATCATT
ACAATTACTGGAAGGGAAAATTTGTTGTAGCCTCAACTTTAAACTGATTC
TGGCTCCTCTTTTTTTTTTTTGGTATCAGCTTTCATAATATATTGCTGAT
GGAAATCATAATCAGTAAAAATAAAGTTCATAAAATTAATTATATAAATT
ATGTTTTTTCATCTATTTTTATTATTTATAAAAACATGGTTTAAATCAGC
CAACCCTGGTATAAAAGTTCTCCTATGATGACTAATGTTTTCAAGTTTTT
TTAATTCCAAAAACACGCAAATATAGTTGATTCATATATTAATTTCATAT
AACAATATTTAAATAGAAGATTATTTGTTGTTGAAATAGATACACAATTG
CAAAAAAGAAAATCTTATAAATACAATAAAGATAATTTACTGAAAAGCAT
AGACTTTTTGGACTCAAATGAAGAAATATACTGCCTTGATGCAAGCATTG
CAAATATAAAGGGTACTTCATCTTAACTTTTTGCAAGCAAAAAAAAAAAG
AAAAAAGAAAAGATGTAAAACGCTACTGTAACTTAATTTCTTAAGGGATT
TTATTAAATTTTATACAAACATTAAAATTATAACACATGAATTTGACATT
AAAAAATCGAAGTTAGCTCGTACCATACGTCACAACGCCCCTGGAAACAT
CCTACTAATTTCTTAACCGTCCTACTGGGTAAAGTCTAAAATAACCTTCT
TATCCCAGCTCTCAGGAATCTTGATGGGTTGTGGGGACCTTTATTGGAAG
CCTGCGCAACATTAACCCCAGAAAAAGTAGTATAAATGGCTTAAATCAGG
KAAGTWAGYAAGCCAATAACTCGGTGTGATGCACATCACGTTATCGGAAT
CAAGTAAATTGAGTGTCCTTTTGCTTGTGTGATAGGGTGTTCCGTTTTGT
TGCCAGATCCAAAGTTGGTCTTTCATGATATTGCTGATCAAGGGGAAGAT
TTTGGTGCATAGAAAACAAATGTAGATTTTGGTGTTGACCTTCAGGGACA
GCTGGAAAATGAAATGCGGCATAACGTGACCCTCGTTGCTAATAACGACA
AAAACCATAACTTGTAATGGGTACATGGCCTTGATGATCTTGCGGACGTT
TATTTAGACTTTTTGCCAACTATCTATTGTTCCTCTAGTTATGCTTCTGG
GTTTTATATACATTTTTCTCATCGGAGAACAAAGACTAGATCTTTCACGG
GAGGCTTCTATTTTAGCTTGATCAAAACCTTAATTCGGTTGACCATTTCC
TCCCTGTTTGACGAGGTTAGAAGATCCCAATTGCGGCGTGAATAGCTGTC
CTAATTGATGGCACGATGAACAGTTGAACAGGACACTATGTAAATGCTTT
AGCGATCACATACATCAATTGGCCTGTATTTTTCTCATTTTTTTTTTCTT
CGCATAGCAGCACTTAGGTCGGTTTTGGTCACTTCAGCCAAAAACACGTT
GTCTATTTCATATATTAAATTGCAAAAAATACATAAAAGTGCAGAACGTT
TTTTTCCTGATCAAAAGAAAATGGGAATATGCTGTCGTAAGGAACCATTA
TGGGAAACTGTGATACCAAGAGTGATATTCGTAACGTACCGCTCTCCATT
AGTGTGTGTGTGTGGGTATTAAAACTAGTTTGAGGGGGATAGTAGTGGGC
CATAGAAAATTGTGCACATTTAAAAGATGTACCCTTTATAAACATCTCTT
GTCACGTCCTTGCAATATTTTGATGATGCTTCTGTCACACTTTTTACGGC
TCTTTCGACAACTTGAGAATGGAATGGATATTTTTCTTCATTATTGATAT
TTTTGTCAATTTTTTCATCGGATAAATATTTTGTAATGTTCAGTCACCTT
TACTTTGGTCCAGTCAATAATTTCCTAATATTGTCTATACTAAAAAGGTA
ATTTATATATTTTAAATACTTTAGGGTACGATTTTGAAGTACGTTACTGT
AGAAATATATCGAAATATGAATTAATTTCAATCATTCAACCTTAATTAAT
TATTGAATTAGTAAGTGTTCAGATTTCAATGGACCACTCGGTATTGCGGG
TTGGATACTTAAAGCCACATAGCATAGTTTTACACTGAATAAATTTATAA
CCTATTGTAGTTCGCATAATGTCGACATCCACAGCTGAAAACAAAGTAGA
GTTTAAATTTTTAGTGTAAGTGAGGCATGTAATACTCTAGAATAGACTAA
AATATTTATAATATTATATGAGTAAGATAATGCTATGATGAGTAGTAGAA
AAATAAGTATTTTTTGTTTTTGGGATAATGACGTTACCTATCTTAATTTA
CAAATTATGAATGTTTTTTATTTTTATGTTTCAGGTACTCATTTTTCCAT
TAAGG back to top
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