EMLSAG00000001193, EMLSAG00000001193-683959 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001193
Unique NameEMLSAG00000001193-683959
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001193 vs. C. finmarchicus
Match: gi|592806358|gb|GAXK01148210.1| (TSA: Calanus finmarchicus comp1026787_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 8.139e-2
Identity = 21/65 (32.31%), Postives = 29/65 (44.62%), Query Frame = 0 
Query:    1 MSKKVRILCYGDSLTAGFY--FGGRYFEPYGESLVNALGEDDFEVDYCGRCGATTQDMLNDLDKD 63
            M + VR+L +GDSLTAG+   +G RY  PY   +    G     +    R  A  Q  +     D
Sbjct:  149 MGQLVRVLTFGDSLTAGYTGSYGARY-HPYAGFIQTNRGLGVLTMQVKNRFMAINQKFITASTSD 340
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BLAST of EMLSAG00000001193 vs. C. finmarchicus
Match: gi|592806359|gb|GAXK01148209.1| (TSA: Calanus finmarchicus comp1026787_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 5.019e-1
Identity = 15/28 (53.57%), Postives = 19/28 (67.86%), Query Frame = 0 
Query:    1 MSKKVRILCYGDSLTAGFYFGGRYFEPY 28
            M + VR+L +GDSLTAG+   G Y  PY
Sbjct:   59 MGQLVRVLTFGDSLTAGYT--GNYGAPY 136
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BLAST of EMLSAG00000001193 vs. C. finmarchicus
Match: gi|592809856|gb|GAXK01144712.1| (TSA: Calanus finmarchicus comp59054_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 7.685e+0
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 0 
Query:   37 GEDDFEVDYCGRCGATTQDMLNDLDKDITDKHSWN 71
            G+ D++VD+C   G   + +L+D+     +K SWN
Sbjct:  289 GDVDWDVDHCCLQGQPVKSLLDDVSILS*NKSSWN 393
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BLAST of EMLSAG00000001193 vs. L. salmonis peptides
Match: EMLSAP00000001193 (pep:novel supercontig:LSalAtl2s:LSalAtl2s119:440567:443553:-1 gene:EMLSAG00000001193 transcript:EMLSAT00000001193 description:"maker-LSalAtl2s119-snap-gene-4.18")

HSP 1 Score: 161.77 bits (408), Expect = 6.107e-53
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 
Query:    1 MSKKVRILCYGDSLTAGFYFGGRYFEPYGESLVNALGEDDFEVDYCGRCGATTQDMLNDLDKDITDKHSWNTSGYYM 77
            MSKKVRILCYGDSLTAGFYFGGRYFEPYGESLVNALGEDDFEVDYCGRCGATTQDMLNDLDKDITDKHSWNTSGYYM
Sbjct:    1 MSKKVRILCYGDSLTAGFYFGGRYFEPYGESLVNALGEDDFEVDYCGRCGATTQDMLNDLDKDITDKHSWNTSGYYM 77
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BLAST of EMLSAG00000001193 vs. nr
Match: gi|1129181259|gb|OLP88637.1| (Sperm-associated antigen 6 [Symbiodinium microadriaticum])

HSP 1 Score: 64.3142 bits (155), Expect = 2.821e-10
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0 
Query:    6 RILCYGDSLTAGFYFGGRYFEPYGESLVNALGEDDF--EVDYCGRCGATTQDMLNDLD 61
            RILCYGDSLTAGF+ GG  F+PYG ++  AL       +V  CG  GAT+++ML   D
Sbjct:  956 RILCYGDSLTAGFFAGGHKFDPYGRAMSEALAAAGVSCQVTVCGHSGATSREMLEASD 1013
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BLAST of EMLSAG00000001193 vs. nr
Match: gi|1129191412|gb|OLP96421.1| (Zinc transporter ZIP12 [Symbiodinium microadriaticum])

HSP 1 Score: 63.929 bits (154), Expect = 3.364e-10
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 0 
Query:    6 RILCYGDSLTAGFYFGGRYFEPYGESLVNALGEDDF--EVDYCGRCGATTQDMLNDLDKDITDK 67
            R+LCYGDSLTAGFY GG++F+PYG +L N +        V  CG  G + ++ML  ++  + D+
Sbjct:   22 RVLCYGDSLTAGFYSGGQWFQPYGRALANEMAAYGVTSHVAVCGLTGKSAEEMLLGVNASLVDQ 85
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BLAST of EMLSAG00000001193 vs. nr
Match: gi|551661549|ref|XP_005833541.1| (hypothetical protein GUITHDRAFT_107765 [Guillardia theta CCMP2712] >gi|428177682|gb|EKX46561.1| hypothetical protein GUITHDRAFT_107765 [Guillardia theta CCMP2712])

HSP 1 Score: 56.9954 bits (136), Expect = 4.887e-8
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 0 
Query:    1 MSKKVRILCYGDSLTAGFYFGGRYFEPYGESLVNALGEDDFEVDYCGRCGATTQDMLNDLDKD 63
            + ++ RILC+GDSLTAG+Y  G  F PY   L   LG    EVDY G  G TT+ M +  D D
Sbjct:   25 IEQRKRILCFGDSLTAGYYAQGNRFHPYANLLKKLLG---VEVDYIGLSGWTTRQMCDSKDSD 84
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001193 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001193 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592806358|gb|GAXK01148210.1|8.139e-232.31TSA: Calanus finmarchicus comp1026787_c0_seq2 tran... [more]
gi|592806359|gb|GAXK01148209.1|5.019e-153.57TSA: Calanus finmarchicus comp1026787_c0_seq1 tran... [more]
gi|592809856|gb|GAXK01144712.1|7.685e+034.29TSA: Calanus finmarchicus comp59054_c1_seq1 transc... [more]
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BLAST of EMLSAG00000001193 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000011936.107e-53100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s119:44056... [more]
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BLAST of EMLSAG00000001193 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001193 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001193 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|1129181259|gb|OLP88637.1|2.821e-1051.72Sperm-associated antigen 6 [Symbiodinium microadri... [more]
gi|1129191412|gb|OLP96421.1|3.364e-1043.75Zinc transporter ZIP12 [Symbiodinium microadriatic... [more]
gi|551661549|ref|XP_005833541.1|4.887e-847.62hypothetical protein GUITHDRAFT_107765 [Guillardia... [more]
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BLAST of EMLSAG00000001193 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s119supercontigLSalAtl2s119:440567..443553 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s119-snap-gene-4.18
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001193 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001193EMLSAT00000001193-697040Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s119:440567..443553-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001193-683959 ID=EMLSAG00000001193-683959|Name=EMLSAG00000001193|organism=Lepeophtheirus salmonis|type=gene|length=2987bp|location=Sequence derived from alignment at LSalAtl2s119:440567..443553- (Lepeophtheirus salmonis)
GAATTAAACATAGCAATGTCAAAAAAAGTACGTATTCTTTGTTATGGAGA
TAGTCTTACAGCGGGCTTTTATTTTGGAGGAAGATATTTTGAGCCCTACG
GAGAAAGCCTTGTTAATGCGCTGGGTGAAGATGATTTTGAAGTGGACTAT
TGTGGTCGTTGTGGGGCTACAACTCAGGATATGCTGAATGATTTGGATAA
GGATATCACTGATAAACATAGGTAATTACTTATTATTTTATTATACGCTG
GTTGTGTAGGATATATTATGTGACATAATTTATGTCATATGTGGTGAGTT
AACATAAAAAAAATTTTTTGAACATAAAACTAGAAAAGAAAGAAATTTCC
AGTTTATTTTTCTTTTACATAATTTATTAATATACACCAACAGTCCCGTT
GTATTTCTGTCTCTATGGTCCCGTAATCAGAGCTATATCAAGCCAAGATA
CTTAGGAACAATGTTCTAATTATTTTGTATCAAGGGAGTGGGGACTGCAT
GTTTTAAAAGGTGCTACGGCTGTGACTACAATTTTCTTTGATGGCTAGTC
TTGAGATAACATTTTTATTGGTTTATTTGTTTTTAGTGACCTTTTTTATT
AAAACTAAAAATTTGAAATTATTTATATAATATTTTGTTCTGTACAAGTT
GCAATTTCTTCGTCTTAAAATGCATTATTTAATTACAACATGAGTCATTC
TAATTAGTTACTATTAATTTATACTATCATTTGATTTTGATTTATTAAAA
TAAACAGGGTTACTAGGTATTAATGAGTAAAATAACTTTGGGCATTTGAA
CTTCAAAATGAGCCATATAATACTTATGTTTTAGTAATTTTATTAAAATA
GTCCAAAATTATAACATTAATATATAGATCATCCAGGGAATATTCCATTA
TTGTATTATTCTCATCTCAAGTATTGTAAATTATTCATCTCATTTTTTGG
TTGCAACTAGTACAATTTATTTATACAAGTTGGAACTAGTACAAAATCAC
AACTTTTTACAGAACATACGTATCACATGTATGTAAATAGAAAAGACAAT
TTATTTCACATATATATTTATAAAAATGTGCTCCCTTAAAAGTAAACGAC
TNCCTAATCATGATAATTTCGAATATTATAAAAATTCTTCAGTTTTACTA
GAATAAAGTTTAAATTATGTTTATGCTTTAGTTAGAGATTGACACAAACA
TAGTGTTTTGGGGGAACAGTTGAAGAACTGGGCCTCAATATTTAATAAAC
ATATTTTTTCGGTCAATTATAGTTTTCTAATTCAAATTACTGGGATAGGT
AGAACCTCCCAAGGATTAATCAGATTAATTTGCAGGTAGAAATTGACTTA
CAAAAATTTAGATTCAATTTTGATAAAAATCATTCTAGCTTTTTTTTTTT
TGTGTTAATGTGCAACATATGTGTATATATTGTATAAAATTACCATTACA
GACCGTCATGGAAAGGGATGGGACTACGTAAAATGTTAAAGTATAATGGG
TCCTATGATCTAGTCATTTTACTCTTAGGATCGAACGATTTGTATTGTAA
GTACTATTAAAATTAAACATTGTATGATTTTTATCATAATATAATTTAAT
TTTTGACTCCATATATTAAATTATTTTTAACTCATCATATTATGTAGCTT
AAATTAAAATAAATTGGGTAAAATCAATAAAACTTAAATTTACTTTAACT
TCATTTTTTAATATTATTAAATGCACAAATTAAAATAAATTTGAAAAATT
TGATCTATTTACTTTTAGTCTAATTTTAAATATTTTCACTCCTCTTCTTC
CCCATAAAATTTTAATCTTTAAAATATACAATTATTTTAATAAATGTAGC
CTGTCAATGCAATAGTAAGCTAGAATTATTTTCCTCAAAATTGAGTACAT
ATTAGATTTATATTCTTCGATAAATTATCGTCAACCTCTATCAACTAATT
AATCTGCTCAATCCTTTGAAGGCACCGCATATTGCACTGAAAGTAGCAAA
AATTAATTGTCACACTAATTATTTTTAAGGTCATATTGGACCTAATTAAC
CCTAATAATTCATATGAAGAATTTAAACTATAGTTAACTTTCTTAGGTAT
CTACAATCATTCCAGAAATTTGAATAGTATGTCTATAATTGACTAGAATA
ATTTGTATAAAATATTGGGCTGAATATATATATTCAGGGCGAGGAATAAG
TTCTTGAAGATATGTTTTAGTTTATAAATTCAATATAAATTTATTAATTA
GCATCAACTATAAATTAATTTAAAAAAAAAACTTTTGTTCGAAATAGCTC
CGTTTACACGGATTACATGGCGGAGACGAAGATACACTTGAGTAGAGGCA
AAAATTTACCCATTCCTCTATGAGGGTACGCTTCATAATATCTTTGGTGG
GACGATGCTTGATACAAGCCCTCGCCAGAAAAATAGATGACATAGAAAAG
TCCATGGTATTCAGGTCAGGGATGCTAGGGGGTCACATATTCTTTTTCCA
ACAGTCCAACACACTTATCGTAGTGTGAAAGATTGCCCCGTCTTAGTTGA
AGAATTTGGGCGCGTTTAAGGTGTTTAAGGTTTACGTGCTCCCTCTGCCC
ATGGGTTTCATTGTCTCCACCGACGTAATCTGGACTAAGGCTATTTCGAA
TAAAAGTTTAAAAAAAATTAATTTAGGTATATTACAGTTTGATAATTTCA
ACAAAGATTTATACTAATTAATAAATTTATATTCAATTTATAAACTAAAA
CATAGCTTCCCGTACTTATTCATCACCCTGTATGATGTAAAATATAAAAT
GTGGAATTTTTTCTTTTCTTGATTTTCGTTCAATATTGTTTTTGTGCTAA
AGAAACTCAAATGTCACCTTTGGTGTAAATTATTAATACTTTTCCACCAA
ATATCTATATTTTGAAAATTCGAAAAATTTATTACTAATATTATATATTT
CAATTTCAGTTGGAATACATCAGGATATTACATGTAA
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