EMLSAG00000001220, EMLSAG00000001220-683986 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001220
Unique NameEMLSAG00000001220-683986
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592947269|gb|GAXK01011284.1| (TSA: Calanus finmarchicus comp23656_c5_seq10 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 7.675e+0
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 0 
Query:   30 FHNISTKTHLCIRLSKSFADSQIP 53
            FH +S   +LC+RL +SF     P
Sbjct:  204 FHKLSQYRNLCLRLGQSFLHQDFP 275
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BLAST of EMLSAG00000001220 vs. C. finmarchicus
Match: gi|592947257|gb|GAXK01011296.1| (TSA: Calanus finmarchicus comp23656_c12_seq2 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.968e+0
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 0 
Query:   30 FHNISTKTHLCIRLSKSFADSQIP 53
            FH +S   +LC+RL +SF     P
Sbjct:  300 FHKLSQYRNLCLRLGQSFLHQDFP 371
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BLAST of EMLSAG00000001220 vs. L. salmonis peptides
Match: EMLSAP00000001220 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:343021:345433:-1 gene:EMLSAG00000001220 transcript:EMLSAT00000001220 description:"snap_masked-LSalAtl2s11-processed-gene-3.6")

HSP 1 Score: 133.265 bits (334), Expect = 3.048e-42
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 
Query:    1 MFPNAYLTFNPRKMRRSTTNERNHVNFQEFHNISTKTHLCIRLSKSFADSQIPRYKISSEFTIP 64
            MFPNAYLTFNPRKMRRSTTNERNHVNFQEFHNISTKTHLCIRLSKSFADSQIPRYKISSEFTIP
Sbjct:    1 MFPNAYLTFNPRKMRRSTTNERNHVNFQEFHNISTKTHLCIRLSKSFADSQIPRYKISSEFTIP 64
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001220 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001220 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592947269|gb|GAXK01011284.1|7.675e+041.67TSA: Calanus finmarchicus comp23656_c5_seq10 trans... [more]
gi|592947257|gb|GAXK01011296.1|8.968e+041.67TSA: Calanus finmarchicus comp23656_c12_seq2 trans... [more]

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BLAST of EMLSAG00000001220 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012203.048e-42100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s11:343021... [more]
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BLAST of EMLSAG00000001220 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001220 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001220 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001220 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s11supercontigLSalAtl2s11:343021..345433 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s11-processed-gene-3.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001220 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001220EMLSAT00000001220-697067Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s11:343021..345433-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001220-683986 ID=EMLSAG00000001220-683986|Name=EMLSAG00000001220|organism=Lepeophtheirus salmonis|type=gene|length=2413bp|location=Sequence derived from alignment at LSalAtl2s11:343021..345433- (Lepeophtheirus salmonis)
ATGTTTCCTAATGCATATTTAACGTTCAATCCTCGAAAAATGAGAAGATC
TACAACGAATGAGAGGAATCACGTCAATTTTCAAGGTAAGAACAAAATGA
TAAGATAATGATGACATAAAAAATAACAGAAATTATAATATCATAATAAT
GATAAAAGACAAAAAATCGTCAAATGAGATCAAGATTTCTAATTTCGAAA
TATTTCATCCATTAAATAAATAACGTAATTTCGAAATCATTTGTTTTTTT
ATAAGTAGTTGGCTAAAGAGGTCATTTCAGTGTTAAAGGATTTTGCGTTT
ATTTTTTTCCTGGTTATTATTTTATATTACTACTATGTCTTCATTTTTAA
GAATTTCATAATATATCAACAAAAACTCACTTGGTATGTACCAACATATC
ATTGGAAGAGGAAAGGCCTGTTTCAAAATAAAATCGGGAGAAACCGGTGT
TATAAGAGACTCTATGATATAAATATGAAGTTTAATATTGTATCTCTGAT
TTGCAAAACTTTTTGATTACAAATGTCCGTTTTCTAATTGGATAATTATG
ATTGATTCGTAGCAAAATTACTTAGTCAATCGTTGATAAAGGCCAGTTTA
TCTCTTATCAGACAATTATAATCAGAACCGCCTTAGACTAATGATAGACC
ACAAGGCTGAGAAGATTTGATGGCTCTAACAGGTTATACATTGCAAAAAT
ACACATTTTTAGCTCACTAGTGGGTTCTTAAACTTGGTAGACCCCTGCGC
TTCAGCCCAGGTTAGTTTTTTTTATTAAAACAGTCCTGAGGATAATGCAA
GAGCAATTCAGCTTCTCCTAGCTTACGAATTAGGAGCTTGTCACTCTAAC
AAATCCACTATACCTTTTTTTCTAGTCTGAAGTTAATTTTTTTTGTAATG
TACCTAAATACAAATTAAAATCTTCCCTAAAGTAGTGGAGCTTCCTGTAA
TTATATAATGGTACTTTGATAACTGTGTTAACCGGGGTTTGACATTTTTA
ACTTTGATTGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATA
CTTACAGTGTATTCGTTTAAGTAAGTCGTTTGCGGACTCTCAAATTCCTC
GTTACAAGATCGTAAAATATAAAGAAAAAAATAAATAAGGAATATGTCAA
AAGAGAGAAAATACTCACATAAATTTGTTACTTGTAAATTTTCCTGTCAA
AAAATATGAAATAATGGTTTTAAAATTTCATTAATGAAAGTTTTTTTTCT
TTTAAAAAAAATAAAATCAATTAACTTTTCCCATATCTTGAAAGATTTTC
ATTACTCTACAAGAATGAATAATGAGGCCTTTATCCCCAAGTGAATTACG
AATCGGAAATTAGTATTTTTGTATCAAATTTGGTTTCCAAGCATTTCCAA
TCTTAATGAATTAAGTATTTTTACGCTTATAAAAGGTTTGAGCCAATTTT
TGAGTTAGTAAAAATTGCTCCTTAATTTACCCTTTTAATAAAAAGGTTTC
TTTTGAGCATGAAACATATATTACTTTCGTTTGAAATGAGATCATTTTAC
TTTAAAACAGATGAAAAAACAATGATTTTATTAAATATCTGCAGAAAAAA
ATAACGAAAATGAGTTTTTTTCACCTTTACACTCCGTTTTTTTTCTTGAT
TGAATTGTCTCACTTTAGATGTAACCGTCTTTCTGAAGTTAACTATACAT
TATAGATGAAATAGTTTAATTTCATGCAGATTGAAGAACTTTTTTCGAAC
TCAAAAGTGAAGACGTCATACGCTGGTCTCTATTATTTTTTTGAATAAAT
TGATTTAAGACGAAAATATATTTTTATATTTTAGCTAAGTCCTCAGAATT
TACCATACCTTAG
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