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Associated RNAi Experiments
Homology
BLAST of EMLSAG00000001233 vs. L. salmonis peptides
Match: EMLSAP00000001233 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:1530876:1536965:-1 gene:EMLSAG00000001233 transcript:EMLSAT00000001233 description:"snap-LSalAtl2s11-processed-gene-15.18") HSP 1 Score: 246.899 bits (629), Expect = 3.172e-85 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query: 1 MEQNDIIKEYTSLSDTYKQCQPKSNVLYVDKHCAFMISVVTCKTINLLSVIVLYVTYRVRKIAAKKIAIRNISCLLLTKSEYLAQNWLRKRTGPPRSWKEIKPKHGLKAVSCICSLINKID 121
MEQNDIIKEYTSLSDTYKQCQPKSNVLYVDKHCAFMISVVTCKTINLLSVIVLYVTYRVRKIAAKKIAIRNISCLLLTKSEYLAQNWLRKRTGPPRSWKEIKPKHGLKAVSCICSLINKID
Sbjct: 1 MEQNDIIKEYTSLSDTYKQCQPKSNVLYVDKHCAFMISVVTCKTINLLSVIVLYVTYRVRKIAAKKIAIRNISCLLLTKSEYLAQNWLRKRTGPPRSWKEIKPKHGLKAVSCICSLINKID 121
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001233 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of EMLSAG00000001233 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EMLSAP00000001233 | 3.172e-85 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s11:153087... | [more] |
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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s11 | supercontig | LSalAtl2s11:1530876..1536965 - |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Logic name | ensemblgenomes |
| Description | snap-LSalAtl2s11-processed-gene-15.18 |
| Biotype | protein_coding |
| Evidence | IEA |
| Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s11:1530876..1536965- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000001233-683999 ID=EMLSAG00000001233-683999|Name=EMLSAG00000001233|organism=Lepeophtheirus salmonis|type=gene|length=6090bp|location=Sequence derived from alignment at LSalAtl2s11:1530876..1536965- (Lepeophtheirus salmonis)
ATGGAACAAAATGACATCATCAAAGTATATCAAGAGCAGTCAAGAGGCGG
GAAAAACCCTTGTCATCCATTTTAATTAATACTTCCTACATGCACAAGAA
AGAGAATTTTTGGTATACTTCTTTAATTGATTAATTCCATCTCCACCCGA
CTTTAATAATCATATTATTCAATTCTCCTACTTTCAAAAATAACGATCAT
TTTTTTTTTTTTTTGGAAAAATTGGACTTATTCCCTATATAAAGAATAAA
ACTTATTTAAAAGACAAAAAATGTTTCGCGTTATACGCCGTACAGCTATA
TTTTATTGGTAAATAATTATTGTATTGAAAAGCTAATTAAAACCTGAAAA
TTATTGTTTTTACATCTAAAATACTTTTTTTTATATAAATTGCTCTATTT
TTGACTTATATTAATTATTTATTGCTATTTTTTCAATTTAAAAAATATCA
AATTTTAAACTTAAATGGCTTTCAACAACCTTACGACCTTATTTACTATT
AATAACTTTATTCCAAAACTATATTAATACTTAATGCAACTTTTGAACAT
TGATAAATATACTTCTTAATTATGAACCAAAAAGAACATTATCAGACTAA
GTACTTCAAAATTTCGATAAACAAAAACAATTTAAGACCTAGACTAATAT
AAATATACACCATTCGTCTTATTTAAGTTTAGACTTAGAGAAATGCTCAA
AGTAAATTTTTGGTTTGAATTTTACAAAAGTGAGGTTGCATTATATTCTA
ATAATCATTTGCAATAGTTATTGTTCATAAGAATTGGCTGTAATCTTCAA
AAACGACAAATTGGAAACCAAAAGAAATATTGTGTTGTAAATTTTTGAAC
AGTAAAAGACCCCAATTAGAAATTGTCATTTAGAGATCAGGACAGTTGTG
TATTGCATTAACAAGCAAATTAAATCCCAAAGAAAAGTTTCACGAAAGTC
TTGCAAGGTCCTAAACTAACAGTTAGAACAAAGTCCATGATTATCCTCAA
GGGCCAGTGAGATCTTTGGATTCCTCTATCAAGGATGCATGAGCTAACTT
ATTATAATATTACTTCTGTAAGGTTTGAGCAGCTGTCATAAAGAGGGTGA
AAGTCATCATTGTAGCTGAGGAAGGCAATTTTGAATAATGAAAAACTGAT
ATCAGTTATAATCAATTGAAAATAAACTTAGTTTTGTTGTAACTGTCCTC
ACAGTTTTGAATAAAGTTTGCGAAATAATCTTCAATCTAAACTTAAATAT
AACTGATGGAGTATTAAATATTTATGGATGCCATACAAATAAAAATCTAA
ACTTTAACAACAAAAAATGGAGTATAAATTAATTATATGATATGAAATAT
TTGATATTCAATTTCGGATAGAAAAACACAATATTAAAGATAAAAAACTT
AATGATACTGTTAATTCAGAATTGTTTACGGACCACAAAATAGACTTTTG
AGCAATATAGCTATTAATTCTTATAATAATGTGTATGCTGAGTATACCTG
TTTTTAAATATATCATGTAAAGGGTTTTTCATTAATAGCGCTCACACTTT
TTTTTCAAATAAAACAAAAACGGTTTGAGATATCGACAATTTCTTTGTTT
GTCGTTAAAGTACATTAAAGTTAATTTATGAATGAACTTCGATGTCGTTT
AAATGATCACCACGTGCACGTTTTACGAAGTCCAATCGTTGAACCCAGTT
TTTGACTACTTTTCCGCATAAATTGGCTGAAACTGCAGCAATTTCGTGTT
GAATATTTGTTCTGAGCTCTTCTAACGTCTTTAATGGTGTAGATTAGGAC
TTTCACGTGACCCAAAAAAAAAAACCTAGAGGCCTTAAATTGCAAGAGCG
AGGCGGTCAATTGATTGGCCCATTTCTGGAGATAAGACGCTCACCAAACT
TACTCTTCAATAAATCGATTGTTACATTTGCTGTGTGTGAAGTGGCACCG
TACCGTCTTGTTGAAACCACATATCGTCCAAGTCCATATCTTCCAATTCA
GGCCAAAAAAAATCGGTTATCATGGCACAGTAACGATTTCAATTCACAGT
AACGTGGTAATTGTCATCGTCGACAAAAAAGTACGACCCAATAACACCGC
CATCATGCAATCCACACCAAATAGTAATTTTTCGGGGATGTAATGGCGCC
ACATGAATCACGTGTGGGTTTTTTCCGGGCCAATAGCGCATATTTTACTT
GTTAACAAAGGCATTGAGCCTAAAATATGCCTCATCGCAGGAGATGATTT
TACGTTGAAAATCAGGATCCTTTTCGAATTTTCCTTCATCCCATTTTACG
AATTCCCGACGTTTGAAGTGGTCAAGTGGCTTCAGTTCTTGTGTCAACTT
GATTTTATACAGGTGTAGGCCAAGATTTTTTCGCAGAATTTGCCACAACG
ATATCACAGAGATGCCCAACGATTGAGAACGGCGCGTAAGACACAAATTT
GGGTCATCTTGAGTTGATGCACTTGCGTCAGCAACATTTTTTACACTTCG
TGTATTTCTTTGTCTCACTGGCACAGGAACATTATGTGACGCGTGTATGG
ACTCAAATTTTTTCACCAAACCTTGAATTGTTGATTTTGTAGATCCATTA
CGTTGACCATAAATTGGCGTTAACGCTCTTAAAGTTTGGATCAAAGACTC
ACCACTTTTGTAATAAATTTTAATAATTTGCATGCATTACTCGAGTGTGT
ACTGCTCCATGATGAAACAACAATTATTTCTTTGCACAGTTGTCAAAGAA
GTAATAACAAATATGATGTCGTTTTCGAAACCTATGAACGTAAAATGTGA
GCGCTCCTATTGAAAACCCCTTTATATATCAATTTTTAGCACAGTACCAA
ATATGTACAAATCTATAAAAAATCTGCATTATATAACTGAAGTAACAATA
AATATTTTTATTTTCATAAATTTGCTAATAAGTGCTCATAAGGTGAACAA
ACATTATTAATTTATGGTTTACTTAGCCCTTCTTTTTTTATTTCAATAAA
AAGATATTAAACTCTTAAAAATACGCAGATTATAATAGACATTAAAAGCT
ATAAAGTGTTGTTTTGTTATTCTTTTAAGTAATAAAGATCGAAATGGAGA
TAAAATTAAATAAATATTTGCAGTAAAGTTAAATTTATTCTACTTAATAT
GTACGTCTAAAAATATTTATGCCAAAAAGTTTAGTATATTTATGCTTATG
CTCATATTTTTACTGTTTTATTATTAAATGTTTAAGATAATGAGAAAAAT
CTGTAAAATTTTAGTTACATACATAAGTATAAATGTTTGTATTCTTTTCT
ATATTGATAAAAAATGATTCAAGCATATGTTAAAAAAACATTTATTTTCA
ATGTATTATATTTTTGTTCAATTTCTAACAAATTGTTATTTTATTAATTA
ATTTTTTGGAGAAGAGAGAGAGAGAGACAACGTAAAATTGTATTTTTGGA
CAAATATATTAGCGATAACAAATTCTGAGTTTGAATAATTAGAAATCATA
AAATATACAGAAAAATATCATCATATTTTTTTTGAAACAGCAAAGCCTTT
ATATAAAAATATTACATATCTATAAAAATAAATACATAAAAGGAAATTTG
CGTTTGTATAAAAACATCCTTCAACCTTATAGTTAAAATTACTTTCCTTC
TAAAGACGTAAATACCAAAAACAATTAAACCATTACAAACACTTAATTAT
AAAGCTTCTCATATTCGTATATAGATAATATAACATTTTTAAAACTTAAT
GTACTTGACGAAAAGAAAAACAACCCCAACAATTCAAATAACTAAAAAAT
GATAATACAACTCAATCCATATTTTCTATATTTGACTTCTTATGTCGCGG
ATAATATAACTAAAAGTTCTTTCATACCGAAGTGATTTCGATAGAAAAAA
CTTCATGAATTCGGCGGCATACTTGAACAAATGAGTTTTGTGGTAATGGA
ATCCTTGGGGTTAAAGCAGTGTATCTAACTAAAGCTAATATGAAGATAGT
CCTAAGATTTATCCATCAATCTCCTATTTTCTATGAGCTGTAGAGCTATA
AACGATTTAAAGTTACTGATAGCTGCACTAATTGTTTTTTTCCTTGCCTG
AAATCTGCTTCCTGTCAGATGGAATAACAAATAACACAATCGCTTCTAAA
TATATTGATCCAATATTTAGATACCAAGAAATATGAAGAAGATATTAAAA
AAAAAATTTCAATAAGAGTTGTAACCTAAAATAAAACTTTTAATAAATAA
AAGAAAAATAAACATAAGAAAAAATTTAAAAAATCTTAAAATGGAGCATA
GGAGTTTCAAATAGGTATTCGATACAAATTTCTAATATTATAAATTGTAC
ATCTAGTATTTCTCAAAGAAGTACTTTTTTGCACATGTGCAATTTATGTG
CCGATGATTCCTTGTCGCTTCCAAAAAATTTAAAGTTGATGGAATATAAT
AGAAAATAAAATTGTTTTGTAAAGGACATTCTAAAAAATATTATTCATAT
CTTATAGGAATATACTTCATTATCTGATACCTACAAACAATGTCAACCAA
AAAGTATTAGATTATCAATTTAATAATAAGCTGGAAAAAATTATTTTTTC
ATATGCACCAAATGAAAAAGCAGACGCTATTATAACTAGGGGCATTTCAT
TACCAACAAACTATCAGTCATTCCTATTTAAATGGTCTTAATATCTATTT
TATATTCATAGTTTTAACAAATAATAGGTAATGTTTTATATGTTGATAAG
CATTGTGCATTTATGATTTCAGTCGTAACTTGTAAAACTATTAACTTATT
AAGTGTTATTGTTTTATATGTAACATATCGTGTACGGAAGATTGCTGCAA
AGAAAATTGCCATAAGGAACATCTCATGTCTTTTACTAACAAAATCAGAA
TACCTCGCCCAAAACTGGCTTCGTAAAAGGACAGGGCCACCAAGGAGGTT
ATAAAGTACTCCTTTTACTTTACAAAGCATTTTAGGACCTACTGAGTACT
TCAAAATAAACACARAGTTCATGGGTTCGAAAATTCAAAAGTACATTAAC
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCATCTTGTCAACCTATAATAAGACATATAATAA
TTTATATATGAAAAATATACAGGGGTCAGAATGTATTTAACAGCATTTGG
AGGGAGCTGAAATACTTTGTGAAGTGTTGGCGGTTTTTTAAAGCAAGAGK
GTGGTAAAGCCTACCGTAGTCTTAATCACCCATGGACCTAGGGTTTATTG
GGATGTATTTGGAATCAGCCTAAATGCTTTGTGAAGTGGCTTYAGTGGGK
TTAAACCACTTTTGTGCCCCTACCATCTTGAAATCAAGTTTTGGGACGAG
ATATTCTAATTTTGTTATTAAAAAGCGGGAAATTTTCCATATAGCAATTT
TTATAGAACTGCAACATCCATAGTATATMCCAGCCGGGCCAATAAAAAAA
TTAACACTGGTTCTTCTTATTGTTAATAAAATAAACTATTTGTTATACCT
TCATCAATAAATTAGAAATTATATTTCCTTTTCTTTATTTGTATGCATGT
AAAAGCTTAATTAAGTTTAATCATGATTATATCTAAATATAGTCATATAA
ATTAATACATTATGTATAGTAGTTTTAGAACAATGCTAATTAATAGAAAA
ACCTTTATTAAGGTATTATTGGACTTTCTGATAGCCAAGTTCAAAAGAAC
TAACTAAATGTAAAAGTAATAACTATACCTTTACCTAAATAAATATGGTT
TTTATGCCAAATAGATAATTTTTTACTAATCCAGCCATCATAAGTGTTGC
AAAGTTACTCAAAAATTAATTGTGAGCCATATTATGATCTTTATTGTTCT
TATTAACCTTTCAGTTGGAAAGAAATAAAGCCAAAACATGGATTAAAGGC
TGTTAGTTGTATATGTTCACTTATAAACAAGATTGACTGA back to top
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