EMLSAG00000001234, EMLSAG00000001234-684000 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001234
Unique NameEMLSAG00000001234-684000
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001234 vs. C. finmarchicus
Match: gi|592917296|gb|GAXK01041079.1| (TSA: Calanus finmarchicus comp7408767_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 1.855e+0
Identity = 11/41 (26.83%), Postives = 23/41 (56.10%), Query Frame = 0 
Query:   22 LNDDQLELLYSRFKIMKCIILHNFNLILVLLSNHTIIFKQS 62
            ++     +++ RF+I   I+LHN+  + VL  +  II++  
Sbjct:  365 MDSSNRGIIFRRFRIRSVILLHNYAPLFVLYGHVNIIYRNG 487
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BLAST of EMLSAG00000001234 vs. C. finmarchicus
Match: gi|592850987|gb|GAXK01106557.1| (TSA: Calanus finmarchicus comp118347_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 6.575e+0
Identity = 9/25 (36.00%), Postives = 20/25 (80.00%), Query Frame = 0 
Query:   32 SRFKIMKCIILHNFNLILVLLSNHT 56
            S FK++   +L++FN+++V+++ HT
Sbjct:  554 SYFKLVDVFLLYSFNIVIVIMAIHT 628
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BLAST of EMLSAG00000001234 vs. C. finmarchicus
Match: gi|592850986|gb|GAXK01106558.1| (TSA: Calanus finmarchicus comp118347_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 6.701e+0
Identity = 9/25 (36.00%), Postives = 20/25 (80.00%), Query Frame = 0 
Query:   32 SRFKIMKCIILHNFNLILVLLSNHT 56
            S FK++   +L++FN+++V+++ HT
Sbjct:  554 SYFKLVDVFLLYSFNIVIVIMAIHT 628
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BLAST of EMLSAG00000001234 vs. L. salmonis peptides
Match: EMLSAP00000001234 (pep:novel supercontig:LSalAtl2s:LSalAtl2s11:222608:224750:-1 gene:EMLSAG00000001234 transcript:EMLSAT00000001234 description:"snap-LSalAtl2s11-processed-gene-3.35")

HSP 1 Score: 126.716 bits (317), Expect = 1.044e-39
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 
Query:    1 MSKPQMKSLHVRMALLNEIGALNDDQLELLYSRFKIMKCIILHNFNLILVLLSNHTIIFKQSH 63
            MSKPQMKSLHVRMALLNEIGALNDDQLELLYSRFKIMKCIILHNFNLILVLLSNHTIIFKQSH
Sbjct:    1 MSKPQMKSLHVRMALLNEIGALNDDQLELLYSRFKIMKCIILHNFNLILVLLSNHTIIFKQSH 63
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001234 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001234 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592917296|gb|GAXK01041079.1|1.855e+026.83TSA: Calanus finmarchicus comp7408767_c0_seq1 tran... [more]
gi|592850987|gb|GAXK01106557.1|6.575e+036.00TSA: Calanus finmarchicus comp118347_c2_seq1 trans... [more]
gi|592850986|gb|GAXK01106558.1|6.701e+036.00TSA: Calanus finmarchicus comp118347_c2_seq2 trans... [more]
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BLAST of EMLSAG00000001234 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012341.044e-39100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s11:222608... [more]
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BLAST of EMLSAG00000001234 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001234 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001234 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001234 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s11supercontigLSalAtl2s11:222608..224750 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s11-processed-gene-3.35
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001234 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001234EMLSAT00000001234-697081Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s11:222608..224750-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001234-684000 ID=EMLSAG00000001234-684000|Name=EMLSAG00000001234|organism=Lepeophtheirus salmonis|type=gene|length=2143bp|location=Sequence derived from alignment at LSalAtl2s11:222608..224750- (Lepeophtheirus salmonis)
ATGAGTAAGCCTCAAATGAAGTCATTGCATGTATGTAAATGACTTATTTT
CTGCATCTTTAAATTTAGGTTATTTATTTTATTTTGTTTGAAACTGTTTA
AGTCTCGTAATTAAATATGTTCATTATAATCTTTTTTTTCTTCAAAGCCG
TTTTTTTTTTGCAAGAGACATAAAAAAATACTAATTTTGTCAACGTCTAA
GGACTCTCAAGCCATTTAATTTAAAAAAAAAACTTTTGTATTGAAATGGG
ATATTTTAAAGCTTCTTGTAGCAACACTAATATAATACTATGATTCAAAA
GTGACCTTTTTGGCATTTGACTTATCAGTAAAAAAATTTGTGCATCAATT
TGTATAAAATGTCTTGGGTGTAAACTATGTTTTATAATTTGGAGTTGCCC
TGTTATATTAGAAATAATGTTCCTCGTTTTTTTTTTTGTTCAACACGGCA
TTTTAATGGCGAATTTGACATAAAAACTCCATTTTTCAAACTAAAATGGC
ATATTCCCTGCAAACAATGTCCTAAGAAGTCTCAAATATCCCCATATTCA
GCTTTTAGACTATCTCCAGTAAAAAATGTTTTTTCTATAGGAAAATATTA
ACTTGAAAATGGGGACAGTCATAGATATACTTGTATAACTAATATAATGT
TAATAATTTCAATCTCAATAAATATATTTTTATCTTTATAGGTAAGAATG
GCTCTTTTAAATGAGATAGGAGCACTAAACGACGATCAGTTAGAACTTTT
ATATTCTCGTTTCAAAATAATGGTAAGCAATCAGATAAATTTTTATGGGT
GTTGTAGTACATCATATCTCTTTGGCATTTGGTTATCAGTGAAACAACAA
CAACAATGATGTGTACTCTAATAATAGGTAGTCCCTACTTATTTGACTTG
TTCTATTGGTTTCATTGCTCATAAATATTAAACAAATAATAAAACACTTA
AAAATAAGAATTTAAAAAAAAAAAAGGATTAGTATATATTATTCTGTTGA
TAGAAAATACCTTCAAAGTTAATTTTACCAACTATACTTATGTCTTTGTG
GAATTCCATAAATTACTCAGATAAAGAACCCACATAAAACCACAAGTTCT
TTTTAAGGCTCCATAACTCAATAGTGAGCAATGCATTCATCCATCAATTT
ATCAAATAATGAATAAACAAATTATACTACCTACGCATTGGGGTTTCTCA
CTTACAGGGAGAGTTTCATTCGACAAGATTCCGGAAAATTATGTGATGAA
ATAGTTAATAATAAATACTGGGGAATGAAGTAGTGCCTTTTATATTTTAG
TAGAAAACATAGCCCATTAATTTATGAAAGATCCCAAATGAATTCAAGTT
CCTCGCAAATTATAGTTAAATCTTCATTCCCTGGTTTTTTATTTGTTTTT
CTACTTGGCATTATACACTGTCGATGTTCCTCATTTAAACTGTAGGATAA
GTTGTTAAAAACTTTATTACATATATCTAGATAAATTATGCCAAGCTTTT
GAAAGGGAGTTTATTTATGTTTACTTGCTAGTGTTAAAAAACCCAGCAAA
AACTACTAATTATATGCCAGTGTTCATTTGCTGTGCAAAAAACGACTAAC
TATATGCTAACAATTGAATGCAAAACATTAAGAAAATAATAGTAAAAATA
AAAGCCAACTAATGGGTAAATAACACTGACATATTGTTATAAAAACGCTA
TTCAAATATGCTAACACATATCCAACATTTATTTACTCTCTACTTACTTA
TATCTTGCACTGAATTTCCCTCGCAATAACTTTTTTCTCTAGAATTCAAC
GTAGGGATAAATGGAATCTCCTGATCCTAGAAGATAAACCACATACTACT
TTAGAGGCACCACAATAATGCACATATTAATTGATATAATATTTTAAACC
AATAATAATGATACCTCATCCAAATCCAATCGAGGATCAAACGCCTTTGA
GCCCTTGTATCCTTGACCTTCCTCTTTACATATGTACTCATACACATATT
TGGAATTTACATCTCTAATACAAATATCCAACATAATATATTAAATATTT
TCTTCCCTACAGAAATGCATCATTTTGCACAATTTCAATTTGATTTTGGT
TCTTTTATCAAATCATACTATTATTTTTAAACAATCTCATTGA
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