EMLSAG00000001240, EMLSAG00000001240-684006 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001240
Unique NameEMLSAG00000001240-684006
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001240 vs. GO
Match: - (symbol:rad51ap1 "RAD51 associated protein 1" species:7955 "Danio rerio" [GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR026632 ZFIN:ZDB-GENE-050419-96 GO:GO:0005634 GO:GO:0006281 GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:BX323558 HOVERGEN:HBG079699 TreeFam:TF335955 PANTHER:PTHR15361:SF2 GeneTree:ENSGT00730000111239 EMBL:CR751235 Ensembl:ENSDART00000067386 InParanoid:Q1L8M2 OMA:REGNDED OrthoDB:EOG7Z3F6C PRO:PR:Q1L8M2 Uniprot:Q1L8M2)

HSP 1 Score: 64.6994 bits (156), Expect = 6.909e-10
Identity = 44/98 (44.90%), Postives = 54/98 (55.10%), Query Frame = 0 
Query:  426 TPPTISVNSSPAXPTPSSSKSNPTTNRIT-PVISTPKSASRLNTMKTIPKWTPPAMIGKSGNASNNSEQKPSPSLGIRVGLSRRFKAAKPLHTNVKLN 522
            T P+ SV  SPA P  S SK  P+T  I+ P + +  +  RL      PKW PP M+G+S  AS N   K SP  G+R+GLS R    KPLH NV  N
Sbjct:  259 TAPSPSVCRSPAAPV-SVSKKAPSTPPISKPTLCSSPAGGRL------PKWNPPGMVGRSPGASQNGSLK-SPGQGLRLGLS-RLARVKPLHPNVAAN 347
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BLAST of EMLSAG00000001240 vs. C. finmarchicus
Match: gi|592880986|gb|GAXK01076915.1| (TSA: Calanus finmarchicus comp99543_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 56.225 bits (134), Expect = 1.696e-7
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 0 
Query:  455 PVISTPKSASRLNTMKTIPKWTPPAMIGKSGNASNNSEQKPSPSLGIRVGLSRRFKAAKPLHTNVKL 521
            PV ++P  ++ +   K +P WTPPA IG  G  S+N     SPS+G+RVGLSR FK +KPLH+ VK 
Sbjct: 1180 PVPASPSPSTPIQ--KKMPGWTPPARIGTPG--SSNLSPGFSPSIGLRVGLSRNFK-SKPLHSGVKY 1365
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BLAST of EMLSAG00000001240 vs. L. salmonis peptides
Match: EMLSAP00000001240 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1202:104004:105776:1 gene:EMLSAG00000001240 transcript:EMLSAT00000001240 description:"maker-LSalAtl2s1202-augustus-gene-0.34")

HSP 1 Score: 1019.61 bits (2635), Expect = 0.000e+0
Identity = 523/523 (100.00%), Postives = 523/523 (100.00%), Query Frame = 0 
Query:    1 MLKEFDFLSPEKSGTSSKLSSKKKTTTNINYPLTSTQISSNDSLLDAEEGNPFEDHAKSSSKRSRLSLEEKVFQRQLEEVMEISRTSEFGTMNSTIPLSHQGAPLQVLDIVTHSPSDSCPKRSREDSGSNTNHDHFTVSVSNKENKIKISRSSKNKPIILDDDSDDDFPEGPVSLKAYKEKEKSKTSHTPVALESDQTKKASEKPESNKRKRDQVVPLQNNSPNKGKDSSSKKLKNKYLDDDFYSEDIPTNKPESEEEYSPEKKSKKSSKKSKKKDSKKSPKESKRKKKTKDDCNTKSIKSSSTQENDTKNSTSDMTTANCNNAKTIISSSTRQSDSKNSNTDLAPVNSTNSSTKTIKSSSTRESDSKNSTSESDCNSNVKVIKSSSKRESGSRNSTSNRTPVNPISKPLSSVPPKVKLRNDPPKTPPTISVNSSPAXPTPSSSKSNPTTNRITPVISTPKSASRLNTMKTIPKWTPPAMIGKSGNASNNSEQKPSPSLGIRVGLSRRFKAAKPLHTNVKLNP 523
            MLKEFDFLSPEKSGTSSKLSSKKKTTTNINYPLTSTQISSNDSLLDAEEGNPFEDHAKSSSKRSRLSLEEKVFQRQLEEVMEISRTSEFGTMNSTIPLSHQGAPLQVLDIVTHSPSDSCPKRSREDSGSNTNHDHFTVSVSNKENKIKISRSSKNKPIILDDDSDDDFPEGPVSLKAYKEKEKSKTSHTPVALESDQTKKASEKPESNKRKRDQVVPLQNNSPNKGKDSSSKKLKNKYLDDDFYSEDIPTNKPESEEEYSPEKKSKKSSKKSKKKDSKKSPKESKRKKKTKDDCNTKSIKSSSTQENDTKNSTSDMTTANCNNAKTIISSSTRQSDSKNSNTDLAPVNSTNSSTKTIKSSSTRESDSKNSTSESDCNSNVKVIKSSSKRESGSRNSTSNRTPVNPISKPLSSVPPKVKLRNDPPKTPPTISVNSSPAXPTPSSSKSNPTTNRITPVISTPKSASRLNTMKTIPKWTPPAMIGKSGNASNNSEQKPSPSLGIRVGLSRRFKAAKPLHTNVKLNP
Sbjct:    1 MLKEFDFLSPEKSGTSSKLSSKKKTTTNINYPLTSTQISSNDSLLDAEEGNPFEDHAKSSSKRSRLSLEEKVFQRQLEEVMEISRTSEFGTMNSTIPLSHQGAPLQVLDIVTHSPSDSCPKRSREDSGSNTNHDHFTVSVSNKENKIKISRSSKNKPIILDDDSDDDFPEGPVSLKAYKEKEKSKTSHTPVALESDQTKKASEKPESNKRKRDQVVPLQNNSPNKGKDSSSKKLKNKYLDDDFYSEDIPTNKPESEEEYSPEKKSKKSSKKSKKKDSKKSPKESKRKKKTKDDCNTKSIKSSSTQENDTKNSTSDMTTANCNNAKTIISSSTRQSDSKNSNTDLAPVNSTNSSTKTIKSSSTRESDSKNSTSESDCNSNVKVIKSSSKRESGSRNSTSNRTPVNPISKPLSSVPPKVKLRNDPPKTPPTISVNSSPAXPTPSSSKSNPTTNRITPVISTPKSASRLNTMKTIPKWTPPAMIGKSGNASNNSEQKPSPSLGIRVGLSRRFKAAKPLHTNVKLNP 523
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001240 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-6.909e-1044.90symbol:rad51ap1 "RAD51 associated protein 1" speci... [more]
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BLAST of EMLSAG00000001240 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592880986|gb|GAXK01076915.1|1.696e-749.25TSA: Calanus finmarchicus comp99543_c0_seq1 transc... [more]
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BLAST of EMLSAG00000001240 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012400.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1202:1040... [more]
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BLAST of EMLSAG00000001240 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001240 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001240 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001240 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1202supercontigLSalAtl2s1202:104004..105776 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1202-augustus-gene-0.34
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001240 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001240EMLSAT00000001240-697087Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1202:104004..105776+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001240-684006 ID=EMLSAG00000001240-684006|Name=EMLSAG00000001240|organism=Lepeophtheirus salmonis|type=gene|length=1773bp|location=Sequence derived from alignment at LSalAtl2s1202:104004..105776+ (Lepeophtheirus salmonis)
CAACTATTTTATAGCCAATTGGTGTTTTATTAGTAGAACGTATATGGCCG
ACGTTCCTCATATTTCATGCAAATGACGTAAGAATAATAAATAAAAGATC
CGATTTTTACGCGGGATGTTGAAAGAGTTTGACTTTTTGAGCCCAGAGAA
ATCTGGGACATCTTCCAAACTATCATCCAAGAAGAAGACGACTACTAATA
TTAATTATCCCCTTACCTCTACTCAAATCAGTAGCAATGATTCTCTTCTT
GACGCGGAGGAAGGAAATCCATTTGAAGATCATGCAAAGAGTTCGTCTAA
GAGATCCCGACTTTCATTGGAAGAAAAAGTTTTTCAACGTCAATTGGAGG
AAGTCATGGAGATTAGTCGAACCTCTGAATTTGGCACAATGAATTCCACG
ATTCCTTTATCGCATCAAGGTTCTGAAAAGTTTAAATTTATTGTTTTATC
ATTAATTGTCTATTATTTCCATGACTTAATAATATATGCATAAACATGTT
TACAGGGGCTCCTCTCCAAGTTTTGGACATTGTAACTCATTCTCCTAGTG
ATTCATGTCCAAAAAGGTCGAGAGAAGACTCGGGCTCTAATACAAATCAT
GATCATTTTACCGTTTCAGTTTCGAATAAAGAAAATAAAATAAAAATATC
TCGTTCTTCAAAGAATAAGCCAATTATCCTGGATGACGATAGCGATGATG
ATTTTCCTGAAGGACCAGTGAGTCTTAAGGCTTACAAAGAAAAGGAAAAA
AGCAAGACATCTCATACCCCAGTTGCATTAGAATCCGATCAAACCAAAAA
GGCTTCTGAAAAACCTGAATCCAATAAAAGGAAAAGGGATCAAGTTGTCC
CTCTTCAAAATAATTCTCCGAATAAAGGAAAGGATTCCTCCTCTAAAAAG
CTGAAGAATAAGTATTTAGATGATGACTTTTATTCTGAAGATATCCCAAC
AAATAAACCAGAATCTGAGGAAGAATATTCGCCTGAAAAAAAATCGAAAA
AAAGTTCAAAGAAAAGTAAGAAAAAGGACTCCAAAAAGTCACCTAAAGAA
TCAAAAAGGAAGAAAAAGACTAAAGATGATTGTAATACAAAATCAATTAA
ATCATCTTCCACTCAAGAGAATGATACAAAAAATTCTACTTCGGATATGA
CTACTGCCAATTGTAATAATGCAAAAACGATTATATCATCCTCCACTCGA
CAGAGTGATTCAAAAAACTCTAATACAGATCTTGCTCCTGTAAATTCAAC
TAATTCTAGTACAAAAACGATTAAATCATCCTCTACTCGAGAAAGTGATT
CAAAAAACTCTACTTCGGAATCGGATTGCAATTCTAATGTAAAAGTGATT
AAATCATCTTCAAAACGAGAGAGTGGTTCAAGGAACTCTACTTCGAATCG
GACTCCTGTTAATCCTATTTCTAAACCATTATCTAGTGTTCCTCCTAAAG
TTAAATTACGAAATGACCCTCCGAAGACACCACCAACTATATCTGTGAAT
TCGAGCCCTGCTWYCCCCACACCTTCATCCTCTAAATCTAATCCGACTAC
TAATAGAATMACTCCTGTTATATCAACTCCTAAATCTGCATCGCGCCTCA
ATACAATGAAAACAATTCCAAAGTGGACACCACCTGCTATGATTGGTAAG
AGCGGCAATGCATCCAACAACTCAGAGCAAAAGCCATCGCCAAGTTTGGG
TATACGTGTTGGGTTATCTCGTAGATTTAAAGCTGCTAAGCCATTACATA
CAAATGTGAAATTAAATCCTTAA
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