EMLSAG00000001257, EMLSAG00000001257-684023 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000001257
Unique Name	EMLSAG00000001257-684023
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

[Close]

BLAST of EMLSAG00000001257 vs. GO
Match: - (symbol:O57535 "Nucleoside diphosphate kinase" species:9031 "Gallus gallus" [GO:0001726 "ruffle" evidence=ISS] [GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISS] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0006183 "GTP biosynthetic process" evidence=IEA] [GO:0006228 "UTP biosynthetic process" evidence=IEA] [GO:0006241 "CTP biosynthetic process" evidence=IEA] [GO:0030027 "lamellipodium" evidence=ISS] [GO:0043066 "negative regulation of apoptotic process" evidence=ISS] [GO:0045618 "positive regulation of keratinocyte differentiation" evidence=ISS] [GO:0045682 "regulation of epidermis development" evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISS] HAMAP:MF_00451 InterPro:IPR001564 Pfam:PF00334 PRINTS:PR01243 SMART:SM00562 GO:GO:0005739 GO:GO:0005886 GO:GO:0005524 GO:GO:0043066 GO:GO:0046872 GO:GO:0030027 GO:GO:0001726 GO:GO:0045618 GO:GO:0050679 GO:GO:0004550 GO:GO:0006183 eggNOG:COG0105 HOGENOM:HOG000224564 KO:K00940 GO:GO:0006241 GO:GO:0006228 Gene3D:3.30.70.141 InterPro:IPR023005 SUPFAM:SSF54919 PROSITE:PS00469 HOVERGEN:HBG000423 OrthoDB:EOG7GJ6FG TreeFam:TF106373 GeneTree:ENSGT00700000104244 CTD:4831 OMA:CKAADWF EMBL:AF043542 RefSeq:NP_990378.1 UniGene:Gga.2020 ProteinModelPortal:O57535 SMR:O57535 BioGrid:676189 IntAct:O57535 STRING:9031.ENSGALP00000034078 PaxDb:O57535 PRIDE:O57535 Ensembl:ENSGALT00000034721 GeneID:395916 KEGG:gga:395916 InParanoid:O57535 NextBio:20815981 Uniprot:O57535)

HSP 1 Score: 39.2762 bits (90), Expect = 3.540e-4
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRNI HGSD++ES +KEI+LW    EL
Sbjct:  113 VGRNIIHGSDSVESAQKEISLWFKPAEL 140

[Close]

BLAST of EMLSAG00000001257 vs. GO
Match: - (symbol:NME2 "Nucleoside diphosphate kinase B" species:9823 "Sus scrofa" [GO:0001726 "ruffle" evidence=ISS] [GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA] [GO:0004673 "protein histidine kinase activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0006183 "GTP biosynthetic process" evidence=IEA] [GO:0006228 "UTP biosynthetic process" evidence=IEA] [GO:0006241 "CTP biosynthetic process" evidence=IEA] [GO:0007229 "integrin-mediated signaling pathway" evidence=ISS] [GO:0030027 "lamellipodium" evidence=ISS] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0071944 "cell periphery" evidence=ISS] [GO:0005925 "focal adhesion" evidence=ISS] HAMAP:MF_00451 InterPro:IPR001564 Pfam:PF00334 PRINTS:PR01243 SMART:SM00562 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872 GO:GO:0045944 GO:GO:0030027 GO:GO:0071944 GO:GO:0001726 GO:GO:0007229 GO:GO:0018106 GO:GO:0004673 GO:GO:0004550 GO:GO:0006183 eggNOG:COG0105 HOGENOM:HOG000224564 KO:K00940 GO:GO:0006241 GO:GO:0006228 Gene3D:3.30.70.141 InterPro:IPR023005 SUPFAM:SSF54919 PROSITE:PS00469 HOVERGEN:HBG000423 OrthoDB:EOG7GJ6FG TreeFam:TF106373 GeneTree:ENSGT00700000104244 CTD:4831 EMBL:DQ372081 RefSeq:NP_001038075.1 UniGene:Ssc.2257 ProteinModelPortal:Q2EN76 SMR:Q2EN76 PaxDb:Q2EN76 PRIDE:Q2EN76 Ensembl:ENSSSCT00000019150 GeneID:733683 KEGG:ssc:733683 OMA:CKAADWF Uniprot:Q2EN76)

HSP 1 Score: 39.2762 bits (90), Expect = 3.788e-4
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRNI HGSD+++S EKEI+LW    EL
Sbjct:  112 VGRNIIHGSDSVKSAEKEISLWFKPEEL 139

[Close]

BLAST of EMLSAG00000001257 vs. GO
Match: - (symbol:Nme1 "NME/NM23 nucleoside diphosphate kinase 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=ISO] [GO:0002762 "negative regulation of myeloid leukocyte differentiation" evidence=ISO] [GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0004536 "deoxyribonuclease activity" evidence=ISO] [GO:0004550 "nucleoside diphosphate kinase activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005525 "GTP binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005813 "centrosome" evidence=ISO] [GO:0005829 "cytosol" evidence=ISO] [GO:0005882 "intermediate filament" evidence=ISO] [GO:0006165 "nucleoside diphosphate phosphorylation" evidence=ISO] [GO:0006183 "GTP biosynthetic process" evidence=IEA] [GO:0006228 "UTP biosynthetic process" evidence=IEA] [GO:0006241 "CTP biosynthetic process" evidence=IEA] [GO:0006308 "DNA catabolic process" evidence=ISO] [GO:0006897 "endocytosis" evidence=IEA] [GO:0007399 "nervous system development" evidence=IEA] [GO:0007595 "lactation" evidence=IMP] [GO:0009117 "nucleotide metabolic process" evidence=IEA] [GO:0010629 "negative regulation of gene expression" evidence=ISO] [GO:0010976 "positive regulation of neuron projection development" evidence=ISO] [GO:0016020 "membrane" evidence=ISO] [GO:0016301 "kinase activity" evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA] [GO:0019215 "intermediate filament binding" evidence=ISO] [GO:0019899 "enzyme binding" evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA] [GO:0030879 "mammary gland development" evidence=IMP] [GO:0032587 "ruffle membrane" evidence=ISO] [GO:0042802 "identical protein binding" evidence=ISO] [GO:0043015 "gamma-tubulin binding" evidence=ISO] [GO:0043024 "ribosomal small subunit binding" evidence=ISO] [GO:0043388 "positive regulation of DNA binding" evidence=ISO] [GO:0044822 "poly(A) RNA binding" evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm" evidence=ISO] [GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISO] [GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=ISO] HAMAP:MF_00451 InterPro:IPR001564 Pfam:PF00334 PRINTS:PR01243 SMART:SM00562 MGI:MGI:97355 GO:GO:0005829 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0021766 GO:GO:0016020 GO:GO:0005813 GO:GO:0071333 GO:GO:0046872 GO:GO:0035690 GO:GO:0010976 GO:GO:0006897 GO:GO:0071398 GO:GO:0003697 GO:GO:0000977 GO:GO:0033574 GO:GO:0010629 GO:GO:0051591 GO:GO:0007595 GO:GO:0014075 GO:GO:0004550 GO:GO:0006183 GO:GO:0002762 eggNOG:COG0105 HOGENOM:HOG000224564 KO:K00940 GO:GO:0006241 GO:GO:0006228 Gene3D:3.30.70.141 InterPro:IPR023005 SUPFAM:SSF54919 PROSITE:PS00469 OMA:ARQMMGK HOVERGEN:HBG000423 OrthoDB:EOG7GJ6FG TreeFam:TF106373 CTD:4830 EMBL:M35970 EMBL:M65037 EMBL:U85511 EMBL:AF033377 EMBL:BC005629 PIR:A46557 RefSeq:NP_032730.1 UniGene:Mm.439702 ProteinModelPortal:P15532 SMR:P15532 BioGrid:201788 IntAct:P15532 MINT:MINT-1868955 PhosphoSite:P15532 REPRODUCTION-2DPAGE:P15532 SWISS-2DPAGE:P15532 PaxDb:P15532 PRIDE:P15532 Ensembl:ENSMUST00000135884 GeneID:18102 KEGG:mmu:18102 UCSC:uc007kxu.1 InParanoid:P15532 ChiTaRS:NME1 NextBio:293271 PRO:PR:P15532 ArrayExpress:P15532 Bgee:P15532 Genevestigator:P15532 Uniprot:P15532)

HSP 1 Score: 39.2762 bits (90), Expect = 3.991e-4
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRNI HGSD+++S EKEI+LW    EL
Sbjct:  112 VGRNIIHGSDSVKSAEKEISLWFQPEEL 139

[Close]

BLAST of EMLSAG00000001257 vs. GO
Match: - (symbol:NME2 "Nucleoside diphosphate kinase B" species:9615 "Canis lupus familiaris" [GO:0001726 "ruffle" evidence=ISS] [GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA] [GO:0004673 "protein histidine kinase activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005886 "plasma membrane" evidence=IEA] [GO:0006183 "GTP biosynthetic process" evidence=IEA] [GO:0006228 "UTP biosynthetic process" evidence=IEA] [GO:0006241 "CTP biosynthetic process" evidence=IEA] [GO:0007229 "integrin-mediated signaling pathway" evidence=ISS] [GO:0030027 "lamellipodium" evidence=ISS] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0071944 "cell periphery" evidence=ISS] [GO:0005925 "focal adhesion" evidence=ISS] HAMAP:MF_00451 InterPro:IPR001564 Pfam:PF00334 PRINTS:PR01243 SMART:SM00562 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872 GO:GO:0045944 GO:GO:0030027 GO:GO:0071944 GO:GO:0001726 GO:GO:0007229 GO:GO:0018106 GO:GO:0004673 GO:GO:0004550 GO:GO:0006183 eggNOG:COG0105 HOGENOM:HOG000224564 KO:K00940 GO:GO:0006241 GO:GO:0006228 Gene3D:3.30.70.141 InterPro:IPR023005 SUPFAM:SSF54919 PROSITE:PS00469 HOVERGEN:HBG000423 CTD:4831 EMBL:AB207045 RefSeq:NP_001019809.1 RefSeq:XP_005624399.1 UniGene:Cfa.23354 ProteinModelPortal:Q50KA8 SMR:Q50KA8 STRING:9615.ENSCAFP00000025499 PaxDb:Q50KA8 PRIDE:Q50KA8 GeneID:480559 KEGG:cfa:480559 InParanoid:Q50KA8 NextBio:20855562 ArrayExpress:Q50KA8 Uniprot:Q50KA8)

HSP 1 Score: 39.2762 bits (90), Expect = 3.991e-4
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRNI HGSD+++S EKEI+LW    EL
Sbjct:  112 VGRNIIHGSDSVKSAEKEISLWFKPEEL 139

[Close]

BLAST of EMLSAG00000001257 vs. GO
Match: - (symbol:NME2 "Nucleoside diphosphate kinase B" species:9606 "Homo sapiens" [GO:0001726 "ruffle" evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS] [GO:0004550 "nucleoside diphosphate kinase activity" evidence=IDA] [GO:0004673 "protein histidine kinase activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=TAS] [GO:0006183 "GTP biosynthetic process" evidence=IEA] [GO:0006228 "UTP biosynthetic process" evidence=IEA] [GO:0006241 "CTP biosynthetic process" evidence=IEA] [GO:0006351 "transcription, DNA-templated" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=TAS] [GO:0007155 "cell adhesion" evidence=TAS] [GO:0007229 "integrin-mediated signaling pathway" evidence=IDA] [GO:0009142 "nucleoside triphosphate biosynthetic process" evidence=IDA] [GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS] [GO:0030027 "lamellipodium" evidence=IDA] [GO:0043066 "negative regulation of apoptotic process" evidence=IMP] [GO:0044281 "small molecule metabolic process" evidence=TAS] [GO:0045618 "positive regulation of keratinocyte differentiation" evidence=IMP] [GO:0045682 "regulation of epidermis development" evidence=IMP] [GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA] [GO:0050679 "positive regulation of epithelial cell proliferation" evidence=IMP] [GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS] [GO:0070062 "extracellular vesicular exosome" evidence=IDA] [GO:0071944 "cell periphery" evidence=IDA] [GO:0005925 "focal adhesion" evidence=IDA] Reactome:REACT_111217 HAMAP:MF_00451 InterPro:IPR001564 Pfam:PF00334 PRINTS:PR01243 SMART:SM00562 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 GO:GO:0070062 GO:GO:0043066 GO:GO:0046872 GO:GO:0003677 GO:GO:0045944 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0030027 GO:GO:0071944 GO:GO:0001726 GO:GO:0007229 GO:GO:0018106 GO:GO:0004673 GO:GO:0045618 GO:GO:0015949 GO:GO:0050679 GO:GO:0004550 GO:GO:0009142 GO:GO:0006183 EMBL:AC005839 HOGENOM:HOG000224564 KO:K00940 GO:GO:0006241 GO:GO:0006228 Gene3D:3.30.70.141 InterPro:IPR023005 SUPFAM:SSF54919 PROSITE:PS00469 HOVERGEN:HBG000423 OrthoDB:EOG7GJ6FG TreeFam:TF106373 HPA:HPA041113 UniGene:Hs.463456 HPA:HPA008467 CTD:4831 EMBL:X58965 EMBL:M36981 EMBL:L16785 EMBL:DQ109675 EMBL:BC002476 EMBL:BC133029 EMBL:BC133031 EMBL:U29200 PIR:A49798 RefSeq:NP_001018146.1 RefSeq:NP_001018147.1 RefSeq:NP_001018148.1 RefSeq:NP_001018149.1 RefSeq:NP_002503.1 PDB:1NSK PDB:1NUE PDB:3BBB PDB:3BBC PDB:3BBF PDBsum:1NSK PDBsum:1NUE PDBsum:3BBB PDBsum:3BBC PDBsum:3BBF ProteinModelPortal:P22392 SMR:P22392 BioGrid:110895 BioGrid:576341 IntAct:P22392 MINT:MINT-1429922 STRING:9606.ENSP00000376886 ChEMBL:CHEMBL2160 PhosphoSite:P22392 DMDM:127983 DOSAC-COBS-2DPAGE:P22392 OGP:P22392 UCD-2DPAGE:P22392 PRIDE:P22392 DNASU:4831 DNASU:654364 Ensembl:ENST00000393193 GeneID:4831 GeneID:654364 KEGG:hsa:4831 KEGG:hsa:654364 UCSC:uc002itj.3 UCSC:uc002itl.3 CTD:654364 GeneCards:GC17P049242 HGNC:HGNC:7850 HPA:CAB002169 HPA:CAB040571 MIM:156491 neXtProt:NX_P22392 PharmGKB:PA162398077 InParanoid:P22392 PhylomeDB:P22392 BioCyc:MetaCyc:HS04463-MONOMER SignaLink:P22392 ChiTaRS:NME2 EvolutionaryTrace:P22392 GeneWiki:NME1-NME2 GeneWiki:NME2 NextBio:18612 PRO:PR:P22392 ArrayExpress:P22392 Bgee:P22392 Genevestigator:P22392 Uniprot:P22392)

HSP 1 Score: 39.2762 bits (90), Expect = 4.430e-4
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRNI HGSD+++S EKEI+LW    EL
Sbjct:  112 VGRNIIHGSDSVKSAEKEISLWFKPEEL 139

[Close]

BLAST of EMLSAG00000001257 vs. C. finmarchicus
Match: gi|592932680|gb|GAXK01025873.1| (TSA: Calanus finmarchicus comp6338975_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.4318 bits (93), Expect = 8.303e-5
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRNI HGSD++ES  KEIALW    EL
Sbjct:  104 VGRNIMHGSDSVESANKEIALWFKPEEL 187

[Close]

BLAST of EMLSAG00000001257 vs. C. finmarchicus
Match: gi|592785701|gb|GAXK01168867.1| (TSA: Calanus finmarchicus comp194_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 1.466e-4
Identity = 17/28 (60.71%), Postives = 19/28 (67.86%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRNI HGSD +ES   EI LW T  EL
Sbjct:  230 VGRNICHGSDAVESANHEIGLWFTPEEL 313

[Close]

BLAST of EMLSAG00000001257 vs. C. finmarchicus
Match: gi|592869717|gb|GAXK01087845.1| (TSA: Calanus finmarchicus comp4990212_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 7.428e-4
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALW 22
            +GRNI HGSD++ES  KEIALW
Sbjct:  370 VGRNIIHGSDSVESANKEIALW 435

[Close]

BLAST of EMLSAG00000001257 vs. C. finmarchicus
Match: gi|592757245|gb|GAXK01197168.1| (TSA: Calanus finmarchicus comp5240179_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.3502 bits (85), Expect = 7.476e-4
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALW 22
            +GRNI HGSD +ES  KEIALW
Sbjct:  329 VGRNICHGSDAVESANKEIALW 394

[Close]

BLAST of EMLSAG00000001257 vs. C. finmarchicus
Match: gi|592775478|gb|GAXK01179090.1| (TSA: Calanus finmarchicus comp15077_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 7.782e-4
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNELGR 30
            +GRN+ HGSD++ES  KEI+LW    EL +
Sbjct:  613 VGRNVIHGSDSLESAAKEISLWFKPEELSK 702

[Close]

BLAST of EMLSAG00000001257 vs. C. finmarchicus
Match: gi|592788672|gb|GAXK01165896.1| (TSA: Calanus finmarchicus comp384_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 4.306e-3
Identity = 15/28 (53.57%), Postives = 18/28 (64.29%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRNI HGSD +ES   EI LW    +L
Sbjct:  560 VGRNIIHGSDAVESANHEIGLWFRDEDL 643

[Close]

BLAST of EMLSAG00000001257 vs. C. finmarchicus
Match: gi|592856319|gb|GAXK01101225.1| (TSA: Calanus finmarchicus comp6982_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 4.314e-3
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRNI HGSD +ES   EI LW    EL
Sbjct:  109 VGRNICHGSDAVESANHEIGLWFKPEEL 192

[Close]

BLAST of EMLSAG00000001257 vs. C. finmarchicus
Match: gi|592856320|gb|GAXK01101224.1| (TSA: Calanus finmarchicus comp6982_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 4.771e-3
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRNI HGSD +ES   EI LW    EL
Sbjct:  109 VGRNICHGSDAVESANHEIGLWFKPEEL 192

[Close]

BLAST of EMLSAG00000001257 vs. C. finmarchicus
Match: gi|592912655|gb|GAXK01045720.1| (TSA: Calanus finmarchicus comp1094500_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 5.556e-3
Identity = 13/28 (46.43%), Postives = 21/28 (75.00%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNEL 28
            +GRN+ HGSD++E+  +EI+LW    +L
Sbjct:  377 VGRNMIHGSDSVEAANREISLWFREQDL 460

[Close]

BLAST of EMLSAG00000001257 vs. C. finmarchicus
Match: gi|592924169|gb|GAXK01034246.1| (TSA: Calanus finmarchicus comp5141252_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 6.311e-3
Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNELGR 30
            +GRNI HGSD++ES   EI LW    EL +
Sbjct:   32 IGRNIMHGSDSVESATNEINLWFN**ELAK 121

[Close]

BLAST of EMLSAG00000001257 vs. L. salmonis peptides
Match: EMLSAP00000001257 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1204:115687:118087:-1 gene:EMLSAG00000001257 transcript:EMLSAT00000001257 description:"snap-LSalAtl2s1204-processed-gene-0.19")

HSP 1 Score: 132.88 bits (333), Expect = 4.608e-42
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query:    1 MGRNIGHGSDTIESPEKEIALWCTSNELGRSIKDVLPEWGIKFWKNTDSRETPVLEGCSSFCEK 64
            MGRNIGHGSDTIESPEKEIALWCTSNELGRSIKDVLPEWGIKFWKNTDSRETPVLEGCSSFCEK
Sbjct:    1 MGRNIGHGSDTIESPEKEIALWCTSNELGRSIKDVLPEWGIKFWKNTDSRETPVLEGCSSFCEK 64

The following BLAST results are available for this feature:

BLAST of EMLSAG00000001257 vs. GO
BLAST of EMLSAG00000001257 vs. C. finmarchicus
BLAST of EMLSAG00000001257 vs. L. salmonis peptides
BLAST of EMLSAG00000001257 vs. SwissProt
BLAST of EMLSAG00000001257 vs. Select Arthropod Genomes
BLAST of EMLSAG00000001257 vs. nr
BLAST of EMLSAG00000001257 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000001257 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25


Match Name	E-value	Identity	Description
-	3.540e-4	60.71	symbol:O57535 "Nucleoside diphosphate kinase" spec...	[more]
-	3.788e-4	60.71	symbol:NME2 "Nucleoside diphosphate kinase B" spec...	[more]
-	3.991e-4	60.71	symbol:Nme1 "NME/NM23 nucleoside diphosphate kinas...	[more]
-	3.991e-4	60.71	symbol:NME2 "Nucleoside diphosphate kinase B" spec...	[more]
-	4.430e-4	60.71	symbol:NME2 "Nucleoside diphosphate kinase B" spec...	[more]

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BLAST of EMLSAG00000001257 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 19


Match Name	E-value	Identity	Description
gi\|592932680\|gb\|GAXK01025873.1\|	8.303e-5	64.29	TSA: Calanus finmarchicus comp6338975_c0_seq1 tran...	[more]
gi\|592785701\|gb\|GAXK01168867.1\|	1.466e-4	60.71	TSA: Calanus finmarchicus comp194_c1_seq1 transcri...	[more]
gi\|592869717\|gb\|GAXK01087845.1\|	7.428e-4	72.73	TSA: Calanus finmarchicus comp4990212_c0_seq1 tran...	[more]
gi\|592757245\|gb\|GAXK01197168.1\|	7.476e-4	72.73	TSA: Calanus finmarchicus comp5240179_c0_seq1 tran...	[more]
gi\|592775478\|gb\|GAXK01179090.1\|	7.782e-4	53.33	TSA: Calanus finmarchicus comp15077_c0_seq1 transc...	[more]
gi\|592788672\|gb\|GAXK01165896.1\|	4.306e-3	53.57	TSA: Calanus finmarchicus comp384_c1_seq1 transcri...	[more]
gi\|592856319\|gb\|GAXK01101225.1\|	4.314e-3	57.14	TSA: Calanus finmarchicus comp6982_c1_seq3 transcr...	[more]
gi\|592856320\|gb\|GAXK01101224.1\|	4.771e-3	57.14	TSA: Calanus finmarchicus comp6982_c1_seq2 transcr...	[more]
gi\|592912655\|gb\|GAXK01045720.1\|	5.556e-3	46.43	TSA: Calanus finmarchicus comp1094500_c0_seq1 tran...	[more]
gi\|592924169\|gb\|GAXK01034246.1\|	6.311e-3	53.33	TSA: Calanus finmarchicus comp5141252_c0_seq1 tran...	[more]

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BLAST of EMLSAG00000001257 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAP00000001257	4.608e-42	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s1204:1156...	[more]

BLAST of EMLSAG00000001257 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000001257 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000001257 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000001257 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1204	supercontig	LSalAtl2s1204:115687..118087 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	snap-LSalAtl2s1204-processed-gene-0.19
Biotype	protein_coding
Evidence	IEA
Note	Hypothetical protein

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000001257 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000001257	EMLSAT00000001257-697104	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s1204:115687..118087-

gene from alignment at LSalAtl2s1204:115687..118087-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000001257-684023 ID=EMLSAG00000001257-684023|Name=EMLSAG00000001257|organism=Lepeophtheirus salmonis|type=gene|length=2401bp|location=Sequence derived from alignment at LSalAtl2s1204:115687..118087- (Lepeophtheirus salmonis)
ATGGGACGTAATATCGGTCATGGATCTGATACCATCGAATCTCCAGAGAA
GGAAATCGCTCTTTGGTGTACTTCTAATGAACTTGGTTGCNNNNNNNNNN
NNNNNNNNNNNNNNNACAAATAAGTCGTTTTTAAACCAATCATTATATTC
TATATATAGTTTGATTGTTTCCACTWCTAATTCATAAGAATTTTATTCAG
AATTATATTTCTTGAAAAATAAGRTSCAAGAAAWTGAAGGAAATAAATAC
TAACCCCACTCTGTATCTAGTAATGATAAAGGCAGGAGGCACTCTGATAT
AGATCTTCAATTCTACTCTGACTCAAACAAGGACTTTCATTTTTCACTCT
TCAGCAAATCCTCAGTGTAACTCTAAGTCCTGCATAGACTCTTCAGGAAT
AGAATAATAATGATAACAGACCTTGAAAAACTACTCAGGCTGTAACTATT
AATAGGTTTGTGCTCGTTGAATGTCATATTTTGTATAATTATGAATATAT
GTATGCACTTTTTATGTTATAAATATGTGATTGAAGATTTTCTATCTATA
TGCATATATTTTTTGATGCATCCATGCAAAGCAAAAATAATATATAAAAC
ATATGCTTTCCATTTGGTCTTTTTTGTTGATATATTTCATTCATAAATAG
GGATGTAACTTCTTTAAAGAATTCTTCGTAAAGAAAACTAAGTTATTGGT
TAAACTTAATAGGAAAATTGCAAAGTCTCATATTGTGCCTATGTATTGGG
AAGGATTAATAAAGTTTCTCTCCTTTACTGAAGAAAATAATGGAACATAA
GAACAATAATATTTAAATTGCGAACTTGGTAGGGGGCAAAAACCTCCATT
TAAAATCAAATTTAATTATGTATCTCAATTATTTCCAAAGTACTGTTTAC
AATACGAATATGCATTTTTTGAATTTTGGGATACCTTAACCTTGCCTCTA
CTTGTGATCATAGAACTCATACATTTATGACGTCTGGTTGACAAGGGGGA
AGGGGGTTACCAATTTAATGATTTTTTAGGATGAGGGGGATGGYGGTGGT
AMGCGATACTTYGGAGCCACTACAATTGGAACCCTTTCAATATGAACTTT
ATCACCAGGGATGTCAAAAGGTTGTTTTGTTTTACACTATGAAACTTTTT
TGGCTAATAGAATTTTTTTTATGAGAAAATAGGTGTTCAAATTTTTTTAT
AAGGATTTATTTTCTAAAAAAAATGGGGATTGGGCCAAAATTATACAGCG
GAGCAATAAAATAATACTGCAGATGCCCCTGATCTATGATCTTCATGACA
ACCAATATTTTATATTTATATATATATAAAGGGCGGTCTATTAAGGACGT
CCTGCCTGAGTGGGGTATCAAGTTTTGGAAAAACACAGACAGTAGGGAGG
TTCAAAAATTATACTTTATTCTGTACGTCATAAATGTATGACGATATCCC
TTATGTCAAATTTAATCAAACTAGATCTGTACCTTTTGTCATGATCCTGG
TGACAAATAACATAACCTCCACGAACGAAGTTGTAATCATAATGAATAAA
AGTAGTAGAGGTATTCACAGGGGGGGGGGAGGGTATTAGGGGCACTTGCC
CCCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCCTCCCAATTTTTTTAAATCCAAAAATGAAGCCCCCCT
AATATATATATATACTCCTGCGTACGCCCTTGAGTAGTCAATTGTGCATT
AGCCAATGTATACTTTAAATAATTTAATGGCGGSAACGAAARAGCKCCAG
GAGAATACCTCCGATGCTTTTATTTCAACTTGATAGATAAAAATATATGA
TTATAGAATGATTGCCCAATACCAGTTTTATTATCTAAGAATACATGATT
TTGATTTTTACATTAGACTCCAGTTTTGGAAGGATGTTCATCGGTAGAAA
GCCTATTAATAAGATAATTTTGTCATAGATAATGCAGTTTTTCTTCCGTT
AGTGTTTTGATTTAACATTATTATTGAGATCCATTGCTTATATTTTTATA
TTTGTAGAGTCAATTTAATCCATGGAATATAAATATACTGACATAAAGGA
GAAATAATAGTCAGATCGATCATTAACCCAACGTTTCGTTCCTGGGGTCT
TCAGAAACCCCCTTTTTAATTAAATGGATTATTTTCTCATTCCCAATCTT
TTTTTCTTTTTTTTTTGTTTCTCCTACAACGTGAGGTCTTCCTTTTTGAT
TAATACAAGTTGTTTCTGGCTTATTCTCAAATATTTTAGGAGTGATGATA
AATTAACCATTCTTTTTTCTGACTTTTTTTTTTAAGTTTTGCGAAAAATA
A

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