EMLSAG00000001273, EMLSAG00000001273-684039 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001273 vs. C. finmarchicus
Match: gi|592829647|gb|GAXK01127897.1| (TSA: Calanus finmarchicus comp3657701_c0_seq2 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 3.058e-3 Identity = 25/86 (29.07%), Postives = 41/86 (47.67%), Query Frame = 0 Query: 75 MKAFSRYLEDTWIGT-----FSNEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIV 155 + F YLE WIGT +P F+ +W+ ++ G S+N E W + L A P++W+L+ +K E A K++ Sbjct: 186 LSQFVSYLEANWIGTPRIDAPRKKPRFAISTWSINESLLEGTEFSTNSSESW-NSVTKLSVVAKPSLWQLIIQLKAEDASARAKVM 440
BLAST of EMLSAG00000001273 vs. C. finmarchicus
Match: gi|592829648|gb|GAXK01127896.1| (TSA: Calanus finmarchicus comp3657701_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.5058 bits (88), Expect = 6.668e-3 Identity = 25/86 (29.07%), Postives = 41/86 (47.67%), Query Frame = 0 Query: 75 MKAFSRYLEDTWIGT-----FSNEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIV 155 + F YLE WIGT +P F+ +W+ ++ G S+N E W+ L A P++W+L+ +K E A K++ Sbjct: 186 LSQFVSYLEANWIGTPRIDAPRKKPRFAISTWSINESLLEGTEFSTNSSESWNS-VTKLSVVAKPSLWQLIIQLKAEDASARAKVM 440
BLAST of EMLSAG00000001273 vs. C. finmarchicus
Match: gi|592949738|gb|GAXK01008815.1| (TSA: Calanus finmarchicus comp938886_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.238e+0 Identity = 24/98 (24.49%), Postives = 40/98 (40.82%), Query Frame = 0 Query: 75 MKAFSRYLEDTWIGTFSNEPLFSQLSWNQYDA----CH------AGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIVQHLRRQP 162 +++F + + GTFS P + W QY A C+ A + E + +G L A P WK+++G+ + DN +L P Sbjct: 862 LESFRKSPNRSIDGTFSTTPFCGTIGWAQYLALLHQCNGVWLSTAYVLLPDKTKESYVNGLNLLRKAAIPPGWKVVEGLP-NHIVKDNTDASYLSSIP 1152
BLAST of EMLSAG00000001273 vs. C. finmarchicus
Match: gi|592952788|gb|GAXK01005765.1| (TSA: Calanus finmarchicus comp2809718_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 2.496e+0 Identity = 24/107 (22.43%), Postives = 42/107 (39.25%), Query Frame = 0 Query: 78 FSRYLEDTWIGTFSNE--PLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIVQHLRRQPPYP-RKRKLIQFDYQLKTIV 181 F +YL + N P + W+ Y G R+++ LE WH Q + P + I E I +HL + + K+ ++ + ++K IV Sbjct: 338 FDKYLVRGYTNAAGNHVPPRWGPEMWSVYSKVLEGRTRTTDKLEAWHRRLQEIIIRPHPDFDTFLKVICEEWIFIKTNIKKHLAKLKTFEVAKKTMLDREERIKRIV 658
BLAST of EMLSAG00000001273 vs. C. finmarchicus
Match: gi|592760743|gb|GAXK01193670.1| (TSA: Calanus finmarchicus comp496901_c0_seq2 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 1.000e+1 Identity = 20/76 (26.32%), Postives = 30/76 (39.47%), Query Frame = 0 Query: 53 PFVLLGQMDRDWXLLKPTLLLDMKAFSRYLEDTWIGTFSNEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSL 128 P +G R L +LL ++ LED W S L WN + ++ +L+ W GF+SL Sbjct: 472 PTYSMGIKYRSPAKLSRSLLRSLEYKKAKLEDIWDADISINNENFDLIWNVSKCLKITLKKNVQILDAWQSGFESL 699
BLAST of EMLSAG00000001273 vs. L. salmonis peptides
Match: EMLSAP00000001273 (pep:novel supercontig:LSalAtl2s:LSalAtl2s120:217853:218407:-1 gene:EMLSAG00000001273 transcript:EMLSAT00000001273 description:"augustus_masked-LSalAtl2s120-processed-gene-2.0") HSP 1 Score: 375.17 bits (962), Expect = 1.063e-133 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 Query: 1 MGFWTRRIGSSLVPLKWSRLFLNNLLLFMDCLLKAVLFQQFMVSFLGKTQALPFVLLGQMDRDWXLLKPTLLLDMKAFSRYLEDTWIGTFSNEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIVQHLRRQPPYPRKRKLIQFDYQLKTIVEQL 184 MGFWTRRIGSSLVPLKWSRLFLNNLLLFMDCLLKAVLFQQFMVSFLGKTQALPFVLLGQMDRDWXLLKPTLLLDMKAFSRYLEDTWIGTFSNEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIVQHLRRQPPYPRKRKLIQFDYQLKTIVEQL Sbjct: 1 MGFWTRRIGSSLVPLKWSRLFLNNLLLFMDCLLKAVLFQQFMVSFLGKTQALPFVLLGQMDRDWXLLKPTLLLDMKAFSRYLEDTWIGTFSNEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIVQHLRRQPPYPRKRKLIQFDYQLKTIVEQL 184
BLAST of EMLSAG00000001273 vs. L. salmonis peptides
Match: EMLSAP00000011124 (pep:novel supercontig:LSalAtl2s:LSalAtl2s755:122472:146910:1 gene:EMLSAG00000011124 transcript:EMLSAT00000011124 description:"snap_masked-LSalAtl2s755-processed-gene-1.11") HSP 1 Score: 162.54 bits (410), Expect = 5.521e-50 Identity = 76/120 (63.33%), Postives = 89/120 (74.17%), Query Frame = 0 Query: 62 RDWXLLKPTLLLDMKAFSRYLEDTWIGTFSNEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIVQHLRRQPPYPRKRKLIQFDYQLKTIV 181 R LKPTL D + FSRY EDTWIGT S F++ +WNQYDACHAGIPRSSN++EGW+HGFQSL NCA PTIW M+ I+LE + DNKI QHL R+ P +KRK IQF QLKTI+ Sbjct: 55 RALRFLKPTLSSDTEVFSRYFEDTWIGTSSAYLFFNKCAWNQYDACHAGIPRSSNIVEGWYHGFQSLVNCAEPTIWNPMNTIRLEHVLIDNKICQHLFRKSPPSKKRKWIQFYLQLKTII 174
BLAST of EMLSAG00000001273 vs. L. salmonis peptides
Match: EMLSAP00000005547 (pep:novel supercontig:LSalAtl2s:LSalAtl2s297:424290:425573:-1 gene:EMLSAG00000005547 transcript:EMLSAT00000005547 description:"augustus_masked-LSalAtl2s297-processed-gene-4.3") HSP 1 Score: 61.6178 bits (148), Expect = 6.146e-12 Identity = 40/148 (27.03%), Postives = 65/148 (43.92%), Query Frame = 0 Query: 14 PLKWSRLFLNNLLLFMDCLLKAVLFQQFMVSFLGKTQALPFVLLGQMDRDWXLLKPTLLLDMKAFSRYLEDTWIGTFS-----NEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIVQ 156 PL SR ++F + + +F++ G A+ FV + Q + L T+ + Y EDT+IG EP F WN D G+ R+ N +EGW+ FQ P +W+ +D + EQ++ D+ I + Sbjct: 98 PLPQSR----KEIVFPEIMKSTPTGDKFLIYDSGMLSAIAFVPVDQTIEVFEALSETMPDIGQPIIDYFEDTYIGRLQLQERRQEPSFLHTIWNVRDRIIDGLSRNDNSVEGWYRHFQVNIGSQHPNLWEFIDILHREQSLNDDVITR 241
BLAST of EMLSAG00000001273 vs. L. salmonis peptides
Match: EMLSAP00000008977 (pep:novel supercontig:LSalAtl2s:LSalAtl2s560:196643:207767:1 gene:EMLSAG00000008977 transcript:EMLSAT00000008977 description:"snap_masked-LSalAtl2s560-processed-gene-1.5") HSP 1 Score: 59.6918 bits (143), Expect = 4.782e-11 Identity = 29/74 (39.19%), Postives = 37/74 (50.00%), Query Frame = 0 Query: 81 YLEDTWIGTFSNE-----PLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAI 149 YLED WIG + P FS WN Y A G +++N +GWH F L + P IWK +D +K E I Sbjct: 95 YLEDIWIGRPTGNITQRPPRFSHALWNCYAAAREGGSKTNNSCKGWHCSFNELVRASHPAIWKFLDILKNESLI 168
BLAST of EMLSAG00000001273 vs. L. salmonis peptides
Match: EMLSAP00000005767 (pep:novel supercontig:LSalAtl2s:LSalAtl2s30:850469:898828:1 gene:EMLSAG00000005767 transcript:EMLSAT00000005767 description:"augustus-LSalAtl2s30-processed-gene-9.8") HSP 1 Score: 55.4546 bits (132), Expect = 5.645e-10 Identity = 28/92 (30.43%), Postives = 44/92 (47.83%), Query Frame = 0 Query: 64 WXLLKPTLLLDMKAFSRYLEDTWIGTF----SNEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITD 151 + +L T D++ F+ Y ED +IG + EP + WN G+PR +N +E WH FQ C P++WK + I E + + Sbjct: 153 FEILTETFPEDLRVFADYFEDNYIGRYMGRTGREPRYPLALWNI--RSEEGLPRINNSIESWHMVFQHSMQCKHPSLWKFLQTIIKENGLQE 242
BLAST of EMLSAG00000001273 vs. Select Arthropod Genomes
Match: gb|KFM58704.1| (hypothetical protein X975_17494, partial [Stegodyphus mimosarum]) HSP 1 Score: 59.3066 bits (142), Expect = 7.333e-10 Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0 Query: 78 FSRYLEDTWIGTFSNEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQA 148 F+ Y+E G EP F WN Y+A P+++N EG+H+ SLF+C+ P+IW L DG++ + A Sbjct: 469 FTTYIE----GAAGREPQFPMRLWNHYEAALERSPKTTNCCEGFHNSLNSLFHCSHPSIWFLFDGLQRDLA 535
BLAST of EMLSAG00000001273 vs. Select Arthropod Genomes
Match: gb|EEC03091.1| (hypothetical protein IscW_ISCW002834 [Ixodes scapularis]) HSP 1 Score: 53.5286 bits (127), Expect = 1.586e-8 Identity = 32/137 (23.36%), Postives = 65/137 (47.45%), Query Frame = 0 Query: 51 ALPFVLLGQMDRDWXLLKPTLLLDMKAFSRYLEDTWIGTFS----NEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIVQHLRRQPPYPRKRKLIQFDYQLKTIVEQ 183 AL V ++ + L ++ ++ Y ED +IG + + F WN +D G +++N +E WH FQ+ C+ PT+W+ ++ ++ E A+ +++ + L + + K + +LKT+ Q Sbjct: 4 ALAIVPQDDVEGAFTELASSIRAELLPVVDYFEDVFIGRLTARGRRDAQFPIKLWNHHDTVLQGGSKTTNSVEAWHRSFQAHVQCSHPTLWRFLEVLQREDALQLHRLGR-LEMGQRFKQASKYAKAAERLKTLARQ 139
BLAST of EMLSAG00000001273 vs. nr
Match: gi|970893222|ref|XP_015111985.1| (PREDICTED: uncharacterized protein LOC107037764 [Diachasma alloeum]) HSP 1 Score: 69.3218 bits (168), Expect = 8.858e-12 Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 0 Query: 81 YLEDTWIGTFSNE-----PLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIVQHLRRQPPYPR-KRKLIQFDYQLKTIV 181 Y+E+TWIGT + P F+ WNQY + PR +N +EGWHH + + T+WKL++ + EQ +TD K+ H+ + P K+K + D ++ IV Sbjct: 39 YIEETWIGTLNRRKVRLPPQFAIKLWNQYQSVIQRTPRINNSVEGWHHALNTRAEASHLTVWKLIELMMREQNLTDVKM-SHIEAKVETPTMKKKYREIDARIYNIV 144
BLAST of EMLSAG00000001273 vs. nr
Match: gi|749725120|gb|KII71421.1| (hypothetical protein RF11_11527 [Thelohanellus kitauei]) HSP 1 Score: 70.8626 bits (172), Expect = 1.168e-11 Identity = 38/113 (33.63%), Postives = 61/113 (53.98%), Query Frame = 0 Query: 51 ALPFVLLGQMDRDWXLLKPTLLLD-----MKAFSRYLEDTWIGTFSNE----PLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKI 154 AL F + + R + +++ L + + F Y EDT+IG F+ + P F WNQ D +PR++N +EGWH F S+ +C P I+ + +K EQ+++DNKI Sbjct: 87 ALAFCPVNDVVRYFEIIEDVLREEGSYEILSEFIMYFEDTFIGRFTRQGRVQPRFGISLWNQRDRTINDLPRTNNHIEGWHRAFSSMISCNHPNIFTFLLFLKKEQSLSDNKI 199
BLAST of EMLSAG00000001273 vs. nr
Match: gi|749709072|gb|KII61887.1| (hypothetical protein RF11_14163 [Thelohanellus kitauei]) HSP 1 Score: 71.633 bits (174), Expect = 2.222e-11 Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 0 Query: 51 ALPFVLLGQMDRDWXLLKPTLLLDMKAFSRYLEDTWIGTFS----NEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITD---NKIVQHLRRQPPYPRKRKLIQFDYQLKTIV 181 AL F+ + + L + ++ Y EDT+IG ++PLF WN G+PR++N +EGWH+ FQS C PTI+KL++ + EQ + + ++I + QP K K IQ +L I+ Sbjct: 304 ALSFIPPEDVGTAFDELSESRPANLHNLYNYWEDTYIGRMRRNRRDDPLFPISMWNMRGRVADGLPRTNNSVEGWHNAFQSSVGCHHPTIYKLIENFRFEQDLAEQTISRISSGINTQP--ASKSKYIQLSRRLAAIL 439
BLAST of EMLSAG00000001273 vs. nr
Match: gi|749718526|gb|KII66562.1| (hypothetical protein RF11_16024 [Thelohanellus kitauei]) HSP 1 Score: 67.3958 bits (163), Expect = 3.671e-11 Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 0 Query: 78 FSRYLEDTWIGTFSNE----PLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKI 154 F Y EDT+IG FS + PLF+ WNQ + +P ++N +EGWH F S+ + P I+ + +KLE ++TD+KI Sbjct: 17 FLMYFEDTFIGGFSRQGRLNPLFNITLWNQRNRVMNSLPTTNNNIEGWHRAFSSIVSAHHPNIFAFLSALKLENSLTDHKI 97
BLAST of EMLSAG00000001273 vs. nr
Match: gi|391327060|ref|XP_003738025.1| (PREDICTED: uncharacterized protein LOC100903633 [Galendromus occidentalis]) HSP 1 Score: 69.707 bits (169), Expect = 4.009e-11 Identity = 32/94 (34.04%), Postives = 49/94 (52.13%), Query Frame = 0 Query: 75 MKAFSRYLEDTWIGTFSNEPLFSQLSWNQYDACHAGIPRSSNMLEGWHHGFQSLFNCAXPTIWKLMDGIKLEQAITDNKIVQHLRRQPPYPRKR 168 + +F Y E TWIG N WN ++A + + R++N +EGWH F PT +KL++ +K+EQ +T+ I L + P P KR Sbjct: 138 LTSFINYFEATWIGRPRNPATMKIGWWNAHEATVSAVGRTNNAIEGWHSAFNGRLGATNPTFFKLVEQLKIEQGLTEFVIANSLAQGPGAPAKR 231 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001273 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001273 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000001273 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000001273 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001273 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 2
BLAST of EMLSAG00000001273 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 25
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BLAST of EMLSAG00000001273 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s120:217853..218407- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001273-684039 ID=EMLSAG00000001273-684039|Name=EMLSAG00000001273|organism=Lepeophtheirus salmonis|type=gene|length=555bp|location=Sequence derived from alignment at LSalAtl2s120:217853..218407- (Lepeophtheirus salmonis)back to top Add to Basket
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