EMLSAG00000001288, EMLSAG00000001288-684054 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001288
Unique NameEMLSAG00000001288-684054
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001288 vs. C. finmarchicus
Match: gi|592805316|gb|GAXK01149252.1| (TSA: Calanus finmarchicus comp97118_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 51.6026 bits (122), Expect = 6.773e-9
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 0 
Query:   29 DSYPWTKCSPFEASKKNCPVGEACLKLKSFSTGYAWNWAMRC-QSREEYIQQED 81
            D++PW  CS FEA+KKNCP GE C    S+S G+  N A++C  S+++++ QE+
Sbjct:  151 DTFPWRPCSAFEATKKNCPKGEPCFADLSYS-GWVPNPALKCLASKDKFVYQEN 309
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BLAST of EMLSAG00000001288 vs. C. finmarchicus
Match: gi|592851275|gb|GAXK01106269.1| (TSA: Calanus finmarchicus comp118209_c11_seq19 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.228e+0
Identity = 18/54 (33.33%), Postives = 26/54 (48.15%), Query Frame = 0 
Query:   43 KKNCPVGEACLKL------KSFSTGYAWNWAMRCQSREEYIQQE---DKYFYAG 87
            + NC  G ACL++      K+ S   AW +A R  SR E ++ +   D  F  G
Sbjct:   90 RSNCTCGTACLRVYSLFCFKTVSLSTAW-FADRINSRSEELEDDGCADTVFNVG 248
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BLAST of EMLSAG00000001288 vs. L. salmonis peptides
Match: EMLSAP00000001288 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1214:28727:33366:1 gene:EMLSAG00000001288 transcript:EMLSAT00000001288 description:"maker-LSalAtl2s1214-snap-gene-0.50")

HSP 1 Score: 181.8 bits (460), Expect = 1.544e-60
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 
Query:    1 MKCSLIGSILILLGFVLSTQAYQLIAQYDSYPWTKCSPFEASKKNCPVGEACLKLKSFSTGYAWNWAMRCQSREEYIQQEDKYFYAG 87
            MKCSLIGSILILLGFVLSTQAYQLIAQYDSYPWTKCSPFEASKKNCPVGEACLKLKSFSTGYAWNWAMRCQSREEYIQQEDKYFYAG
Sbjct:    1 MKCSLIGSILILLGFVLSTQAYQLIAQYDSYPWTKCSPFEASKKNCPVGEACLKLKSFSTGYAWNWAMRCQSREEYIQQEDKYFYAG 87
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BLAST of EMLSAG00000001288 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold993_size72668-snap-gene-0.16 (protein:Tk11413 transcript:maker-scaffold993_size72668-snap-gene-0.16-mRNA-1 annotation:"predicted protein")

HSP 1 Score: 89.7373 bits (221), Expect = 3.592e-25
Identity = 42/78 (53.85%), Postives = 60/78 (76.92%), Query Frame = 0 
Query:    5 LIGSILILLGFVLSTQAYQLIAQYD-SYPWTKCSPFEASKKNCPVGEACLKLKSFSTGYAWNWAMRCQSREEYIQQED 81
            ++  IL+++      +AY++    D SYPW+ C+ FEA+KKNCP+G+ACLKLK++ + YAWNWAMRCQSREEYIQ+ +
Sbjct:   44 ILSMILMVVAIGSLIEAYRISQLSDQSYPWSPCNSFEATKKNCPLGQACLKLKAYKS-YAWNWAMRCQSREEYIQRVE 120
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001288 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001288 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592805316|gb|GAXK01149252.1|6.773e-946.30TSA: Calanus finmarchicus comp97118_c0_seq1 transc... [more]
gi|592851275|gb|GAXK01106269.1|5.228e+033.33TSA: Calanus finmarchicus comp118209_c11_seq19 tra... [more]
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BLAST of EMLSAG00000001288 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000012881.544e-60100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1214:2872... [more]
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BLAST of EMLSAG00000001288 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001288 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001288 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001288 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold993_size72668-snap-gene-0.163.592e-2553.85protein:Tk11413 transcript:maker-scaffold993_size7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1214supercontigLSalAtl2s1214:28727..33366 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1214-snap-gene-0.50
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001288 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001288EMLSAT00000001288-697135Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1214:28727..33366+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001288-684054 ID=EMLSAG00000001288-684054|Name=EMLSAG00000001288|organism=Lepeophtheirus salmonis|type=gene|length=4640bp|location=Sequence derived from alignment at LSalAtl2s1214:28727..33366+ (Lepeophtheirus salmonis)
AAGTAACTACATATAGTTCGCAAATAAATTATGAAATATGAGAAGGACCC
ATGAGATGGTATATTAATAATTAGGGTGGATCAAAATATGTTACGTCAGT
GGAGTCAAAGGTTTGGTTTGTGTTATCTTCGTATATCATCCTTCTTATAA
TGTTACACTTACGTAGCTCTATCATAGGTATATTAATATATAGATACCTT
AAATTTTCAAGCAACTCAGGTATATAAGGTATGTAGCAATGTAAACAAGG
AGTCAAAGAAAAGGAGGGGAGAAAAAATTCAGGCATAGCCTTTAAGATAT
GATAGAATAAAGAACTGGAATTGAAAATGAAGTGTTCCTTGATAGGTTCA
ATTTTGATATTGCTAGGCTTTGTCTTGTCTACTCAAGGTAAGTTAATCGA
AATAACTATTTATAAACATTAGAAAAATCTGTATATTTGCTTACTTAAAA
AAAAAACATTTGTTCTCATAATAATATCAATCAATTAGTTGATAATAAAA
GGGATTATAGTAGATTGTACTATCATTGTACACAATATATAGTTAATTGT
ACTTCAGCTATACAACTCAGAGCTCCTTTTTTCTTGCATGATTCAATTCT
TAACAGCCTATCAACTCATTGCTCAGTACGACTCCTACCCTTGGACTAAA
TGCTCTCCCTTTGAAGCTTCCAAGAAGAATTGTCCCGTTGGAGAGGCATG
CCTAAAGTTAAAATCATTTAGCACCGGCTATGCCTGGAATTGGGCGATGA
GATGTAAGTCCAGTAGTTTTTCTCCGCCAATAGTCAACTCAGACGTCAAT
AATATACATATTTTATATTTTTTTCTTTTCAGGTCAAAGTAGAGAGGAAT
ATATTCAACAGGAGGATAAATACTTTTATGCCGGATAGGAAGACATAATC
TTATCGAAAGTAACATAACACCACCTAATTACGTATATATATGTATATGT
ATTAAATTCAGAAGAAGAAACAAAATTAATGCCACATTTATTATCTGTAT
ATGATGAATAAAATGATAAATGTCAATATAACAATCTGATACTATCTTAA
CATTCAAATATGGGGGATTTTGTAGGAGTGGGATAAGGGATAATGACTTC
TCCCTTTTTACAATGTTTGAAAATAATTCTTACATACATCAAATAACTAA
TTTGTTCTACAAATACATAGATATAGATTAATTAATTGTGTAATATTAAT
AGCTCTTTTGGTTTTCCATAGTGCTAAGGGAATTAAAGGCAAATAACCCT
GCCTGGTTATGCATATCTATGAGAGAAGGGCCCATCAAAAGGTTTAAAAT
ACGTAAAATMCCTCMCCCTGGTCCAGCCGTTTTAATATTATGTATGCAAT
AAAAAATGGGACTAAGTAATTGCCGAAAAAAAAGTTAAACATCATTGGGT
ACTACGAATGTGTATTGTAGTTTCCGTTTCCTTTTAATAGTTTTTTTTTT
AAGTTGTAAAAATTGTCCCTTGATTGGTTAATTCTTAGTTGGTTAGACAC
ACATACATAATAACATGTAATCTTGAATTTCACTGTCGTATCACATTACA
TTTGACTCTTCTTGTGCAACAACAGGATGTACAAAATTTGTATAAATAAG
AGCTCCAATAACAATTGTATTATTATTATTCCCATAACATCATCATCATT
AGTACTATGTGACATATTCCTTACAAAAATTATATTTTCAATGTATGAAT
ATATACCTATATAATTATAGGTATACGTATAGTATTGCTCATCTACGATT
AATCCCTAATGTATGCACGTATACTCAAAAGTCATCCACTTTTGCTTTTG
GAATTAGCACGTCTTTATTTCTGATTGGGTTGGATTCGTGTACATAATAA
ATATATATACCTTGGTTTGATTGATAAAGGGCATTTGAAGGGTAGGACTT
TACAAATACATACTACATATAATTATCTATACATTTTTTTGATAGGGCAT
TGTGGCATCCTACAAATAACTATATAACTATTATTAATAATAAAAAGAGA
TTGTCCAAGATTCTATTTTGTCATACATCATCTTACTACTAATTGTTGTG
TCAATCGATCCCTCCTGGATTGTACCTATGCATACTGCATAGGAGAAAAA
ATGATTTAATAAGTGCTTTGCAATATTTTAGAAGAAAAAAACGACATTAA
GACACAAAAATCAAATTTAAAAAACTGGTAGTTACTACCAATGCAATGCA
ATGTATTAGCTTCATGCTTCGTTTTTTGTATTTTTTTAAAGACAGACCTG
AACTATTTATCTATAAAATATATTATATMCTCTTTGGAAGCCTATCAAGC
TGCGATGTATGTATGTAAGGGATTCGTTGTTAGAATACAATACAAGTATG
ATTACACATTAGATCTATTACAGAATTCGTATGACACAAACATTTGTGAA
TTTCGTTTGATATTATAATTGAAATTTTTTGTTTGTCGAAAAAAAAAAGT
TTTCTCACAATTATTAGAGTTAAAGATATTTAATAATTATTTCGATTTTT
TCTTCTTCTCCTTTTGAAAAGATTTAATCATAATTTTTATGTTATAATAA
TAAAAATATAACTCAATAAAYGGGTCATCATCGACTAATTGTTACATGTA
ACATGACACCATCTTGACCCGACATCGTCACAAAAAAATTTAAAAAATGA
AACAACTAAAAATATATAAAAATGACAATAAAAGGGGGATGGATGGGTGG
GTGGGTGGGAGTCTTGGGATTATTGAAACTCTGTCATTATTATTATTAGA
TTTCGTCATAAATTAAGTCCATGTATTGTTTATATTTCTTGAATAGTGTT
TCTTTAAACCAGCACACTCTTCTTATCTAACATCGGAGATAGCTGCCTTA
GATCCAAATATTCTAACAATTTGTTCTTCATAATCTGGTATGTTTTTCTC
CATTAGTTCCAAACAGGGACCCAACAAGCGTTCAAAAGCCTTCACGTCCA
AAACTATTTTGTTGTTTTAATAGAATGAAAATAAATTATTTGAATGAATA
GGTATTTATTTATGGGCAACCTACATGCAAGACGAACATTTCCTTCAGCT
TTTACAGTAGCTGCTCGTGGCTTGTGCGTAACTAAAGCCAATTCACCGAA
GTATTCGCCTTTTTCTTGATTTTTTATCTACAAATACAAAAAATAATTAA
TTCATAAAAAACATGACAGGAAAAACATTTGTAGGACTTACAAATTTTTC
TTGGTCATTATTCATCATGGATATTGACACCCGTCCATCTTCTATAAAGT
ACATGCCGTCAGCTACATTTCCCTGTTTGACAATGATTTCTCCAGAATCA
AATGAGCGGGATACAAGAGCATCAGCCAAGTTCATCCTTTCATAAGGCTA
TAATATACAATAGGATATGATATTAGACCTAGAGGAGGGGTTTGTTAAAT
ATTTGAAATATCTCACCGATAGAGTAGATAGCAAAGGAACACTCTCCAAT
AGTTTCTCATACATTTGTCTCTTTTGAAAAGCGTTCCTTAAAACAATTTT
ACGAAAAGTTGAGCGATCCATGGCCCAGAGTAGACCATCAGTTACGGCCT
TGATTGTAGCAGCTCTAGGCATGTTGTACATTAGAGCTAATTCTCCAAAA
CTTCCTGTATTATCGTAGTTTCCAATGGCTTTATCACCTGAGGAATCCCC
TGTTTTGACATAGATATCATAGATGCCGCTGAAATGGGATAAATATTACA
ATATATATATTTTTTATGCATTACTTTGATTGAAAAAGTATAAAGGAATT
TGGCAGATGAGTTAAAGAGTAAATTTATAATTTGTATTTGAAGGGACAGT
CAAGGATAATTTTAATATTTTAATCTTTCTTTTTGATCTACATCAGGGAT
TGTGGTTCTCACTCCATAAGAATCTAACCAACCTACTTAAATGATTTTTA
CATTCAATTTTAAATCCTTTAATTTTGACCAATCATTATTGTAATATTAA
CTGGTCAAAATCAAACGATTTAAAACTTCGAATACCAAACTGCTCTAATA
CTTGCCTGTTTTCAGCGTTTCACCGCACTAAGGGGTCAATAAATATATTT
TTCAAATTTAGAATTGTCAAAAAATAGGAAACCTGATTTAAGAAGTCATC
TGCGGTTGTTTTTTCAGTTACCCTTGCCTGACACTGCTTAGTACAGATTT
GACTGTATTTCTTAGAGATGGACATTCGAATTTTCTAAAGTAATGCAGAA
TACTAATGAATTAATAATCATATCTATAAAAAGTTGAAGGTCATTACATG
AAAAAGTAATTGAAAAAATCAGTTATTTCATAATATGTATATAAGTATGA
CGAGAATTTAACACGGTCAGCACGCGAAAGAATCATTTTTTCACTCCTTT
AAAATGTATCTAGTTTTTTTTTTTAGATAGGCACTGACACTTATCAGTTA
TCACAAGTACATAGATAGGGGAAGGCCGAGGATTCTTCAGTACCCAACTC
TGGCGAACAAACGTGCCTGTTGTAAAGCATAATTATATAAAATAATATAG
AAGAATAAAAAATACACAGAAATTGAATCACATGTTGCAACTGAGCGTTA
GAATATCTTGAATTTTTCCTCAATGAGTGATTTTTTTAAATTTTGATAGT
AAAATAATCAATAATTCAAATGATAAAAGTTACAACAAAA
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